mRNA_H-canaliculatus_F_contig12115.1834.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12115.1834.1
Unique NamemRNA_H-canaliculatus_F_contig12115.1834.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12115.1834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12115contigH-canaliculatus_F_contig12115:1246..2779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size772
Cds size771
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928925.2856503-CDS-H-canaliculatus_F_contig12115:1245..13321622928925.2856503-CDS-H-canaliculatus_F_contig12115:1245..1332Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12115 1246..1332 -
1696845614.747215-CDS-H-canaliculatus_F_contig12115:1245..13321696845614.747215-CDS-H-canaliculatus_F_contig12115:1245..1332Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12115 1246..1332 -
1622928925.297541-CDS-H-canaliculatus_F_contig12115:2095..27791622928925.297541-CDS-H-canaliculatus_F_contig12115:2095..2779Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12115 2096..2779 -
1696845614.757357-CDS-H-canaliculatus_F_contig12115:2095..27791696845614.757357-CDS-H-canaliculatus_F_contig12115:2095..2779Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12115 2096..2779 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12115.1834.1prot_H-canaliculatus_F_contig12115.1834.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12115 1246..2779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12115.1834.1

>prot_H-canaliculatus_F_contig12115.1834.1 ID=prot_H-canaliculatus_F_contig12115.1834.1|Name=mRNA_H-canaliculatus_F_contig12115.1834.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=257bp
GAAVRSAVRITSGKIPRRRSPSPLTQPRRKMPVSIAGIMKHFRRSKLVDQ
AISGRATSGGQQCSSVAEGEASSSTDTNSRHAKPPLLQRGDKICGPEALL
ATEREEKEDEVTVSSCAVRNKSGGTSTTGDAQEGHISTSCEASCCEVGSP
GQSKGQHVVVHPPQAAKQRMRRECTRLEVGEDAFKAVEGGRQPPRIAFIG
VFLSGVAVTLASFVPFGAADARTALVKALLLEPSISVLPGSCYTARGSAL
AVHIVVD
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mRNA from alignment at H-canaliculatus_F_contig12115:1246..2779-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12115.1834.1 ID=mRNA_H-canaliculatus_F_contig12115.1834.1|Name=mRNA_H-canaliculatus_F_contig12115.1834.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1534bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12115:1246..2779- (Hapterophycus canaliculatus Oshoro5f female)
GGTGCAGCCGTACGCTCAGCCGTAAGAATCACATCAGGAAAGATTCCACG
CAGAAGATCGCCGTCGCCCCTGACCCAACCGCGAAGGAAAATGCCGGTGT
CCATTGCAGGCATCATGAAGCACTTTCGTCGCAGTAAGCTTGTGGACCAA
GCGATTAGCGGGCGTGCAACTAGTGGAGGACAACAATGCTCGTCGGTAGC
AGAAGGGGAGGCCAGTAGCAGCACGGATACGAACAGCCGGCACGCGAAAC
CACCTCTTCTCCAGCGAGGAGATAAAATATGTGGACCGGAAGCGTTGTTA
GCGACCGAGAGAGAAGAAAAGGAAGACGAGGTAACGGTATCTTCGTGCGC
GGTGCGAAACAAATCGGGAGGAACGTCAACGACTGGCGACGCCCAAGAGG
GTCACATCTCGACATCTTGCGAAGCATCATGTTGTGAAGTGGGCAGCCCT
GGACAGAGCAAGGGGCAACACGTTGTGGTTCACCCCCCACAAGCCGCCAA
GCAGAGGATGCGTCGTGAATGCACCAGATTGGAAGTGGGAGAGGATGCAT
TCAAAGCTGTCGAGGGCGGTCGACAACCTCCAAGAATAGCCTTCATTGGC
GTGTTCTTGAGTGGGGTTGCCGTGACTTTGGCGAGCTTCGTCCCATTTGG
AGCAGCAGACGCAAGGACAGCCCTCGTGAAAGCGGTGCGCAGGCGATCGG
GAAACTTATGGTTCGAATGATGCTCGTTTAAGTCTGAAAATTTCGTTTGG
ATCGCTGGGAAAACGTGCCGGTTCTTCGAAAGCCGAATACTGTACAAGTA
CTGTAGGTCTTGTAGATGTACGGCAAAGTCGGGGGATGGTTCAATACGCT
ATTATAGCGATCAATTTTTCAACTAAGCCTCACTTGCTCGTTCTTGGGTC
GGGAAGGGAACCTTTCTGAGATCTGCACGGCGATCATTTTCATAGAGGGC
AAAAAAATGCAATAGCAAGAGGCAAACCGTAATTGTCGACTACATCAGAG
CCCGTTTCAGACGATTGCTGCAAGTACGCACCCTTTATGCAGGGCATCAC
GTTTCTGGTGCCGAGTCTGACCACACGCAGTCTCGAAAGTCGTCAGCATG
TGCAGCAGTGCATCTTCTTTCTAGTCCAACTCTCTTTCAAAAGGATGACC
CGTGCTTGTACTAATAGCTGAGGGCCACAAGTTTGATGCGAATCTCACAC
GGGTTGGGGTTCACCACGGATGAAAGATGGACCCTCACCAACTACCACAA
GCTATGCGGTGTAAGCTGTACCAATAAATACGATGCTCCGACAGTATGGA
TCCATCTAGATTCCACCACGGAGGATGGCGATTTATGACACCAAGTAGGA
GAACGATATAAAACACAAAAGCATGCCCCACGTCTACTGAGCGCGATCGT
GACATGTGCCTCATCCCTCTCGTGTTGGTGTTTTGGGGCCTCCCCAGCTG
TTGCTGGAACCGAGCATCTCTGTTCTGCCAGGCAGCTGCTACACAGCGCG
AGGATCGGCGCTAGCCGTACATATTGTCGTTGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12115:1246..2779-

>mRNA_H-canaliculatus_F_contig12115.1834.1 ID=mRNA_H-canaliculatus_F_contig12115.1834.1|Name=mRNA_H-canaliculatus_F_contig12115.1834.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1542bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12115:1246..2779- (Hapterophycus canaliculatus Oshoro5f female)
GGTGCAGCCGTACGCTCAGCCGTAAGAATCACATCAGGAAAGATTCCACG
CAGAAGATCGCCGTCGCCCCTGACCCAACCGCGAAGGAAAATGCCGGTGT
CCATTGCAGGCATCATGAAGCACTTTCGTCGCAGTAAGCTTGTGGACCAA
GCGATTAGCGGGCGTGCAACTAGTGGAGGACAACAATGCTCGTCGGTAGC
AGAAGGGGAGGCCAGTAGCAGCACGGATACGAACAGCCGGCACGCGAAAC
CACCTCTTCTCCAGCGAGGAGATAAAATATGTGGACCGGAAGCGTTGTTA
GCGACCGAGAGAGAAGAAAAGGAAGACGAGGTAACGGTATCTTCGTGCGC
GGTGCGAAACAAATCGGGAGGAACGTCAACGACTGGCGACGCCCAAGAGG
GTCACATCTCGACATCTTGCGAAGCATCATGTTGTGAAGTGGGCAGCCCT
GGACAGAGCAAGGGGCAACACGTTGTGGTTCACCCCCCACAAGCCGCCAA
GCAGAGGATGCGTCGTGAATGCACCAGATTGGAAGTGGGAGAGGATGCAT
TCAAAGCTGTCGAGGGCGGTCGACAACCTCCAAGAATAGCCTTCATTGGC
GTGTTCTTGAGTGGGGTTGCCGTGACTTTGGCGAGCTTCGTCCCATTTGG
AGCAGCAGACGCAAGGACAGCCCTCGTGAAAGCGGGTGCAGCCGTACGCT
CAGCCGTAAGAATCACATCAGGAAAGATTCCACGCAGAAGATCGCCGTCG
CCCCTGACCCAACCGCGAAGGAAAATGCCGGTGTCCATTGCAGGCATCAT
GAAGCACTTTCGTCGCAGTAAGCTTGTGGACCAAGCGATTAGCGGGCGTG
CAACTAGTGGAGGACAACAATGCTCGTCGGTAGCAGAAGGGGAGGCCAGT
AGCAGCACGGATACGAACAGCCGGCACGCGAAACCACCTCTTCTCCAGCG
AGGAGATAAAATATGTGGACCGGAAGCGTTGTTAGCGACCGAGAGAGAAG
AAAAGGAAGACGAGGTAACGGTATCTTCGTGCGCGGTGCGAAACAAATCG
GGAGGAACGTCAACGACTGGCGACGCCCAAGAGGGTCACATCTCGACATC
TTGCGAAGCATCATGTTGTGAAGTGGGCAGCCCTGGACAGAGCAAGGGGC
AACACGTTGTGGTTCACCCCCCACAAGCCGCCAAGCAGAGGATGCGTCGT
GAATGCACCAGATTGGAAGTGGGAGAGGATGCATTCAAAGCTGTCGAGGG
CGGTCGACAACCTCCAAGAATAGCCTTCATTGGCGTGTTCTTGAGTGGGG
TTGCCGTGACTTTGGCGAGCTTCGTCCCATTTGGAGCAGCAGACGCAAGG
ACAGCCCTCGTGAAAGCGCTGTTGCTGGAACCGAGCATCTCTGTTCTGCC
AGGCAGCTGCTACACAGCGCGAGGATCGGCGCTAGCCGTACATATTGTCG
TTGACCTGTTGCTGGAACCGAGCATCTCTGTTCTGCCAGGCAGCTGCTAC
ACAGCGCGAGGATCGGCGCTAGCCGTACATATTGTCGTTGAC
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