mRNA_H-canaliculatus_F_contig1211.1830.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1211.1830.1
Unique NamemRNA_H-canaliculatus_F_contig1211.1830.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1211.1830.1 vs. uniprot
Match: D7G6P5_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6P5_ECTSI)

HSP 1 Score: 345 bits (884), Expect = 4.300e-119
Identity = 168/199 (84.42%), Postives = 178/199 (89.45%), Query Frame = 1 
Query:    7 KIFQTVAVAAATVFSTAYAAGSATDVTHRVFFDINIAGKPAGRIVMGLFGNAVPKTVENFRQLCTGEAGPGKVYRKPLHYKGSAFHRIIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPPELIHDKPGVLSMANSGKNTNGSQFFICTVPTPWLDGKHVIFGQVEPDSMDLVKTIEKLGSRSGAPSDKVEIADSGEL 603
            KIFQ + +  ATV  T  A    TDVTHRV+FDI+I G  AGRI MGLFGNAVPKTVENFRQLCTGEAGPGKVYRKPLHYKGSAFHR+IPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPPELIHDKPGVLSMANSGK+TNGSQFFICTVPTPWL+GKHVIFGQVE +SM+LV  IEKLGSRSGA S+KVEI DSGEL
Sbjct:    2 KIFQALILGMATVAGTVSADADVTDVTHRVYFDISIGGTEAGRITMGLFGNAVPKTVENFRQLCTGEAGPGKVYRKPLHYKGSAFHRVIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPPELIHDKPGVLSMANSGKDTNGSQFFICTVPTPWLNGKHVIFGQVEEESMELVSRIEKLGSRSGALSEKVEITDSGEL 200
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BLAST of mRNA_H-canaliculatus_F_contig1211.1830.1 vs. uniprot
Match: A0A835ZLK1_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLK1_9STRA)

HSP 1 Score: 283 bits (725), Expect = 6.850e-95
Identity = 137/174 (78.74%), Postives = 151/174 (86.78%), Query Frame = 1 
Query:   82 VTHRVFFDINIAGKPAGRIVMGLFGNAVPKTVENFRQLCTGEAGPGKVYRKPLHYKGSAFHRIIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPPELIHDKPGVLSMANSGKNTNGSQFFICTVPTPWLDGKHVIFGQVEPDSMDLVKTIEKLGSRSGAPSDKVEIADSGEL 603
            VT  VFFD+ I GKP GRIVMGL+G AVPKTVENFR LCTGE G GKVY KPL YKGS+FHRIIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFP EL H +PG+LSMAN+G NTNGSQFFI TV TPWLDGKHVIFG+V  + MD+VK+IEKLGS+SG P  KV++ADSGE+
Sbjct:   24 VTKMVFFDMEIDGKPGGRIVMGLYGEAVPKTVENFRALCTGEKGVGKVYHKPLTYKGSSFHRIIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPKELKHKEPGMLSMANAGPNTNGSQFFITTVATPWLDGKHVIFGKVL-EGMDVVKSIEKLGSQSGRPQAKVKVADSGEI 196
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BLAST of mRNA_H-canaliculatus_F_contig1211.1830.1 vs. uniprot
Match: A0A7S1FIF5_NOCSC (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FIF5_NOCSC)

HSP 1 Score: 248 bits (633), Expect = 4.870e-81
Identity = 124/174 (71.26%), Postives = 141/174 (81.03%), Query Frame = 1 
Query:   82 VTHRVFFDINIAGKPAGRIVMGLFGNAVPKTVENFRQLCTGEAGPGKVYRKPLHYKGSAFHRIIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPPELIHDKPGVLSMANSGKNTNGSQFFICTVPTPWLDGKHVIFGQVEPDSMDLVKTIEKLGSRSGAPSDKVEIADSGEL 603
            VTH+VFFDI + G+ AGRIVMGL+G+ VPKTVENFR LCTGE G GK   KPLHYKGS FHR+IP FMLQGGDFTHGTGTGGESIYG KF+DE F  +L H  PG LSMAN+GKNTNGSQFFI TV T WLDGKHV+FG+V  + MD+V+ +E +GS+SG  S  VEI DSGEL
Sbjct:   21 VTHKVFFDITLDGEDAGRIVMGLYGDVVPKTVENFRALCTGEKGVGKS-GKPLHYKGSKFHRVIPNFMLQGGDFTHGTGTGGESIYGSKFNDENF--QLKHTAPGKLSMANAGKNTNGSQFFITTVTTSWLDGKHVVFGEVL-EGMDIVQKVEAVGSQSGKTSKLVEIKDSGEL 190
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BLAST of mRNA_H-canaliculatus_F_contig1211.1830.1 vs. uniprot
Match: A0A250XMN2_9CHLO (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XMN2_9CHLO)

HSP 1 Score: 247 bits (631), Expect = 1.240e-80
Identity = 123/175 (70.29%), Postives = 141/175 (80.57%), Query Frame = 1 
Query:   79 DVTHRVFFDINIAGKPAGRIVMGLFGNAVPKTVENFRQLCTGEAGPGKVYRKPLHYKGSAFHRIIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPPELIHDKPGVLSMANSGKNTNGSQFFICTVPTPWLDGKHVIFGQVEPDSMDLVKTIEKLGSRSGAPSDKVEIADSGEL 603
            ++TH+VFFDI I G PAGR+VMGLFG+ VPKTVENFR LCTGE G G    KPLHYKGSAFHRIIPQFM+QGGDFT G GTGGESIYG +F DE F  +L H +PG LSMAN+G++TNGSQFFI TV T WLDGKHV+FG+V  + MDL+  +E LG+ SG PS KV IADSGEL
Sbjct:   25 EITHKVFFDIEIDGAPAGRVVMGLFGDTVPKTVENFRALCTGEKGTG-TSGKPLHYKGSAFHRIIPQFMIQGGDFTRGDGTGGESIYGSRFPDENF--KLKHTQPGYLSMANAGRDTNGSQFFITTVKTSWLDGKHVVFGKVL-EGMDLIYKVEALGTGSGKPSKKVVIADSGEL 195
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BLAST of mRNA_H-canaliculatus_F_contig1211.1830.1 vs. uniprot
Match: A0A0D2MNZ0_9CHLO (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MNZ0_9CHLO)

HSP 1 Score: 247 bits (631), Expect = 1.570e-80
Identity = 125/175 (71.43%), Postives = 140/175 (80.00%), Query Frame = 1 
Query:   79 DVTHRVFFDINIAGKPAGRIVMGLFGNAVPKTVENFRQLCTGEAGPGKVYRKPLHYKGSAFHRIIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPPELIHDKPGVLSMANSGKNTNGSQFFICTVPTPWLDGKHVIFGQVEPDSMDLVKTIEKLGSRSGAPSDKVEIADSGEL 603
            +VTH+VFFDI I GKPAGRIVMGLFG+ VPKTVENFR LCTGE G GK   KPLH+KGS FHRIIPQFM+QGGDFT G GTGGESIYG KF DE F  +L H  PG LSMAN+G NTNGSQFFI TV T WLDG+HV+FG+V  + MD+V  +E +GS SG PS KV IADSGE+
Sbjct:   30 EVTHKVFFDIEIDGKPAGRIVMGLFGDIVPKTVENFRALCTGEKGTGKS-GKPLHFKGSVFHRIIPQFMIQGGDFTRGDGTGGESIYGEKFADENF--KLKHKAPGYLSMANAGPNTNGSQFFITTVKTAWLDGRHVVFGKVI-EGMDVVLKVEAIGSGSGTPSKKVTIADSGEI 200
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BLAST of mRNA_H-canaliculatus_F_contig1211.1830.1 vs. uniprot
Match: A0A251V0W7_HELAN (Peptidyl-prolyl cis-trans isomerase n=5 Tax=Asteraceae TaxID=4210 RepID=A0A251V0W7_HELAN)

HSP 1 Score: 246 bits (628), Expect = 4.480e-80
Identity = 123/176 (69.89%), Postives = 140/176 (79.55%), Query Frame = 1 
Query:   76 TDVTHRVFFDINIAGKPAGRIVMGLFGNAVPKTVENFRQLCTGEAGPGKVYRKPLHYKGSAFHRIIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPPELIHDKPGVLSMANSGKNTNGSQFFICTVPTPWLDGKHVIFGQVEPDSMDLVKTIEKLGSRSGAPSDKVEIADSGEL 603
            TDVTH+V+FD+ IAGKPAGRIV GLFGN VPKT ENFR LCTGE G GK   KPLHYKGSAFHRIIP FM+QGGDFT G G GGESIYG KF+DE F  ++ H  PG+LSMAN+GKNTNGSQFFI TV T WLDG+HV+FG+V    MD+V  +E  G++SG+P  KV I DSGEL
Sbjct:   31 TDVTHKVYFDVEIAGKPAGRIVFGLFGNTVPKTAENFRALCTGEKGTGKS-GKPLHYKGSAFHRIIPSFMIQGGDFTLGDGRGGESIYGEKFNDENF--KIKHTGPGLLSMANAGKNTNGSQFFITTVTTSWLDGRHVVFGKVL-SGMDVVYKMEAEGTQSGSPKSKVTIVDSGEL 202
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BLAST of mRNA_H-canaliculatus_F_contig1211.1830.1 vs. uniprot
Match: D8S966_SELML (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S966_SELML)

HSP 1 Score: 245 bits (625), Expect = 1.280e-79
Identity = 122/175 (69.71%), Postives = 137/175 (78.29%), Query Frame = 1 
Query:   79 DVTHRVFFDINIAGKPAGRIVMGLFGNAVPKTVENFRQLCTGEAGPGKVYRKPLHYKGSAFHRIIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPPELIHDKPGVLSMANSGKNTNGSQFFICTVPTPWLDGKHVIFGQVEPDSMDLVKTIEKLGSRSGAPSDKVEIADSGEL 603
            ++TH+VFFD+ I GKPAGR+VMGL+G AVPKT ENFR LCTGE G G    K LH+KGSAFHRIIP FM+QGGDFTHG G GGESIYG KF DE F  +L H  PGVLSMAN+G NTNGSQFFI TV T WLDGKHV+FG+V    MD+V  +E  GS+SGAP  KV IADSGEL
Sbjct:   32 EITHKVFFDVEIGGKPAGRVVMGLYGKAVPKTAENFRALCTGEKGTGS-QGKALHFKGSAFHRIIPSFMIQGGDFTHGNGMGGESIYGTKFADENF--KLKHTGPGVLSMANAGSNTNGSQFFITTVKTSWLDGKHVVFGKVI-SGMDIVYKVEAEGSQSGAPKSKVTIADSGEL 202
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BLAST of mRNA_H-canaliculatus_F_contig1211.1830.1 vs. uniprot
Match: UPI001F5D2617 (peptidyl-prolyl cis-trans isomerase CYP19-4-like isoform X1 n=4 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D2617)

HSP 1 Score: 245 bits (626), Expect = 1.480e-79
Identity = 123/174 (70.69%), Postives = 137/174 (78.74%), Query Frame = 1 
Query:   82 VTHRVFFDINIAGKPAGRIVMGLFGNAVPKTVENFRQLCTGEAGPGKVYRKPLHYKGSAFHRIIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPPELIHDKPGVLSMANSGKNTNGSQFFICTVPTPWLDGKHVIFGQVEPDSMDLVKTIEKLGSRSGAPSDKVEIADSGEL 603
            VTH+VFFDI I GKPAGR+VMGLFGNAVPKT ENFR LCTGE G GK   KPLHYKGS+FHRIIP FM+QGGDFTHG G GGESIYG KF DE F  +L H  PG LSMAN+GK+TNGSQFFI TV T WLDGKHV+FG+V    MD++  +E  G +SG P  KV +ADSGEL
Sbjct:   48 VTHKVFFDIEIDGKPAGRVVMGLFGNAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRIIPSFMIQGGDFTHGNGMGGESIYGTKFADENF--KLKHTGPGYLSMANAGKDTNGSQFFITTVTTSWLDGKHVVFGKVI-SGMDVIYKVEAEGKQSGTPKSKVVVADSGEL 217
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BLAST of mRNA_H-canaliculatus_F_contig1211.1830.1 vs. uniprot
Match: A0A2K1IH38_PHYPA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IH38_PHYPA)

HSP 1 Score: 244 bits (624), Expect = 1.820e-79
Identity = 119/175 (68.00%), Postives = 138/175 (78.86%), Query Frame = 1 
Query:   79 DVTHRVFFDINIAGKPAGRIVMGLFGNAVPKTVENFRQLCTGEAGPGKVYRKPLHYKGSAFHRIIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPPELIHDKPGVLSMANSGKNTNGSQFFICTVPTPWLDGKHVIFGQVEPDSMDLVKTIEKLGSRSGAPSDKVEIADSGEL 603
            +VTH+VFFD+ I G+PAGR+VMGLFG A PKTVENFR LCTGE G G +  KPLH+KGSAFHRIIP FM+QGGDFTHG G GGESIYG KF DE+F  +L H  PG+LSMAN+G NTNGSQFFICTV T WLDG+HV+FG+V    MD+V  +E  G+  G P  KV IADSGE+
Sbjct:   32 EVTHKVFFDVEIGGQPAGRVVMGLFGKAAPKTVENFRALCTGEKGKG-LSGKPLHFKGSAFHRIIPSFMIQGGDFTHGNGRGGESIYGEKFADESF--KLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDGRHVVFGKVL-SGMDVVYKVEAEGTSGGTPKKKVTIADSGEI 202
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1211.1830.1 vs. uniprot
Match: A0A7S2WPF7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPF7_9STRA)

HSP 1 Score: 244 bits (622), Expect = 3.660e-79
Identity = 120/174 (68.97%), Postives = 140/174 (80.46%), Query Frame = 1 
Query:   82 VTHRVFFDINIAGKPAGRIVMGLFGNAVPKTVENFRQLCTGEAGPGKVYRKPLHYKGSAFHRIIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPPELIHDKPGVLSMANSGKNTNGSQFFICTVPTPWLDGKHVIFGQVEPDSMDLVKTIEKLGSRSGAPSDKVEIADSGEL 603
            VTH+VFFD+ I G+PAGR+VMGLFG+ VPKTVENFR L TGE G G+   KPLH+KGS FHR+IP FM+QGGDFT G G GGESIYG KF DE F   L H  PG+LSMAN+G +TNGSQFFICTV TPWLDG+HV+FG+V  + MD++KTIE  GSRSGAPS  + I+DSGEL
Sbjct:   32 VTHKVFFDVEIGGQPAGRVVMGLFGDVVPKTVENFRALATGEKGKGQS-GKPLHFKGSKFHRVIPNFMIQGGDFTMGNGHGGESIYGPKFKDENF--NLKHTGPGILSMANAGPDTNGSQFFICTVKTPWLDGRHVVFGEVL-EGMDVIKTIEGKGSRSGAPSATLVISDSGEL 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1211.1830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6P5_ECTSI4.300e-11984.42Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]
A0A835ZLK1_9STRA6.850e-9578.74Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A7S1FIF5_NOCSC4.870e-8171.26Peptidyl-prolyl cis-trans isomerase n=1 Tax=Noctil... [more]
A0A250XMN2_9CHLO1.240e-8070.29Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chlamy... [more]
A0A0D2MNZ0_9CHLO1.570e-8071.43Peptidyl-prolyl cis-trans isomerase n=1 Tax=Monora... [more]
A0A251V0W7_HELAN4.480e-8069.89Peptidyl-prolyl cis-trans isomerase n=5 Tax=Astera... [more]
D8S966_SELML1.280e-7969.71Peptidyl-prolyl cis-trans isomerase n=2 Tax=Selagi... [more]
UPI001F5D26171.480e-7970.69peptidyl-prolyl cis-trans isomerase CYP19-4-like i... [more]
A0A2K1IH38_PHYPA1.820e-7968.00Peptidyl-prolyl cis-trans isomerase n=2 Tax=Physco... [more]
A0A7S2WPF7_9STRA3.660e-7968.97Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1211contigH-canaliculatus_F_contig1211:3262..6917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score345.9
Seed ortholog evalue1.3e-92
Seed eggNOG ortholog2880.D7G6P5
KEGG koko:K01802
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0865@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionCyclophilin-type peptidyl-prolyl cis-trans isomerase domain
Ec32 orthologEc-26_000140.1
Exons6
Model size606
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1211.1830.1prot_H-canaliculatus_F_contig1211.1830.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1211 3262..6917 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928924.416166-CDS-H-canaliculatus_F_contig1211:3261..33661622928924.416166-CDS-H-canaliculatus_F_contig1211:3261..3366Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1211 3262..3366 -
1696845614.4835477-CDS-H-canaliculatus_F_contig1211:3261..33661696845614.4835477-CDS-H-canaliculatus_F_contig1211:3261..3366Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1211 3262..3366 -
1622928924.433107-CDS-H-canaliculatus_F_contig1211:4159..42911622928924.433107-CDS-H-canaliculatus_F_contig1211:4159..4291Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1211 4160..4291 -
1696845614.4996817-CDS-H-canaliculatus_F_contig1211:4159..42911696845614.4996817-CDS-H-canaliculatus_F_contig1211:4159..4291Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1211 4160..4291 -
1622928924.449431-CDS-H-canaliculatus_F_contig1211:5203..52931622928924.449431-CDS-H-canaliculatus_F_contig1211:5203..5293Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1211 5204..5293 -
1696845614.5079978-CDS-H-canaliculatus_F_contig1211:5203..52931696845614.5079978-CDS-H-canaliculatus_F_contig1211:5203..5293Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1211 5204..5293 -
1622928924.4640026-CDS-H-canaliculatus_F_contig1211:5889..59801622928924.4640026-CDS-H-canaliculatus_F_contig1211:5889..5980Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1211 5890..5980 -
1696845614.516262-CDS-H-canaliculatus_F_contig1211:5889..59801696845614.516262-CDS-H-canaliculatus_F_contig1211:5889..5980Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1211 5890..5980 -
1622928924.4768016-CDS-H-canaliculatus_F_contig1211:6147..62541622928924.4768016-CDS-H-canaliculatus_F_contig1211:6147..6254Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1211 6148..6254 -
1696845614.524352-CDS-H-canaliculatus_F_contig1211:6147..62541696845614.524352-CDS-H-canaliculatus_F_contig1211:6147..6254Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1211 6148..6254 -
1622928924.4906754-CDS-H-canaliculatus_F_contig1211:6836..69171622928924.4906754-CDS-H-canaliculatus_F_contig1211:6836..6917Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1211 6837..6917 -
1696845614.5324304-CDS-H-canaliculatus_F_contig1211:6836..69171696845614.5324304-CDS-H-canaliculatus_F_contig1211:6836..6917Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1211 6837..6917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1211.1830.1

>prot_H-canaliculatus_F_contig1211.1830.1 ID=prot_H-canaliculatus_F_contig1211.1830.1|Name=mRNA_H-canaliculatus_F_contig1211.1830.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=202bp
MVKIFQTVAVAAATVFSTAYAAGSATDVTHRVFFDINIAGKPAGRIVMGL
FGNAVPKTVENFRQLCTGEAGPGKVYRKPLHYKGSAFHRIIPQFMLQGGD
FTHGTGTGGESIYGGKFDDEAFPPELIHDKPGVLSMANSGKNTNGSQFFI
CTVPTPWLDGKHVIFGQVEPDSMDLVKTIEKLGSRSGAPSDKVEIADSGE
L*
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mRNA from alignment at H-canaliculatus_F_contig1211:3262..6917-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1211.1830.1 ID=mRNA_H-canaliculatus_F_contig1211.1830.1|Name=mRNA_H-canaliculatus_F_contig1211.1830.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3656bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1211:3262..6917- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGAAAATATTCCAGACCGTGGCCGTCGCGGCGGCGACTGTGTTCAG
CACCGCCTATGCGGCTGGCAGCGCGACTGACGTGAGTTTTGTTTTCGTGC
CCTTCGCTTCCTACATGCGGTGTACTTTGTGGCTCAGCATGCAGCAAGAA
ATTAGAAGGCAACGCGCTCGGTGTTCAGCTTTGGTTGCTTAGACTTCCCC
TGCGTAGCTACGTGGTGCAGGCACGAAGGTGACCAGGTTGTCAAGCTAAC
CCGTACGTGGATCGTTGAGGCATGAGACAAGTCAGTTGATGCCGAAATGA
GCAGATAGTAAACCCGCTTTGGAACACTCAGACGCGCCGTTGAGTGTCGG
GGCAATTCGAGAACGGGCCTCGCATGCCTGGAGTGGACCGTTCGTTTCAC
GACCGGCGAGCTTGGCGTCCACGCGTGTCTTACGTTGATCGTAAATCCCA
ACATTATTCTTGGTACATCCTGGGTGGAACTTAGATCGGGGCCTTCCGTG
GACTTCTTTTATGATGTCCCGGAGGAAAGAAGCCTCGTCGTACGGTATTC
AGCACTCCCCATGGTGTCCGTGATATCGTTACCCACTGGCCCGATGAGAT
GATCCACGTTGTCTTCGTTGTGGCGCTGCCTAATCTTGCCGGTGCATTGA
ATGGCGGCTGCAGGTGACCCACCGTGTGTTCTTCGATATCAACATCGCCG
GAAAGCCGGCTGGCCGCATCGTCATGGGGCTGTTCGGTAACGCCGTGCCC
AAGACTGTCGAGAACTTCCGGTGCGCACGCTAATCAAGCGGCTATCCTGT
ACCTCGTATGGTTCAAGTTATGTTCGGTAACGTCAGGCCCTCCGACAACA
TTTTCCCGTTGTCGTTTGAATCCGTCGGCCGACTCGAACCCTCGTTGGAT
TTTGCCTTGCTCGATGCGGGTGTTGGTGCTGGTGCAGGCAATTGTGCACT
GGGGAGGCAGGGCCCGGAAAGGTATACCGGAAGCCGCTGCACTACAAGGG
GTCTGCTTTCCACCGCATCATCCCGCAGGTACAGCGTGGCTTGAAAAAGT
CTCGCAGCGGTTTGGTCTAACTTGGTGCCCATTTTCTTCGTTGGACGATG
GTGCCGGTACCTAAGTTTGGTCCGGCGTGTTATGGTCTGAACGGAACCGT
CAGGGTTGGGTGACTTCGAAAGAAGAGGCCTCCTCCTTTGTGTGCATGAA
CCAGTAGGACACGCGATAAACTCCACCTCAGCAGGAAGCCTTCAAATATG
GTGGCCGAGCATGATCGTAATACACAGTCGGAAGTAACCATTTGATTTAT
TTTTGCCTTCTTGGTGCACGTTGGGTGAGGACGTACCTCTAGGCGGCGAC
TGGGATGCAGATCTGCTTTCCATCCCCTTACCCCTTTCTTTCTCACTCAA
ACGGCATTCTTGCGTGAAGCTTTTATCATGTTTTAAGCATGCCGGTGATC
CTTCGTGTTTCGAGCAGCGGGAGTCACCAACTTGGAATTTGAACAAAACC
ATCCACGTCTTTTTGTGAGTCTTCTGTGCGTTGTGTCGGCGGCGATGGCT
ATGCTTTTATGTCCAAGTACCTAATCGAGTAACACCGAGCGGGTGACCCT
TCTCTTGTGCTTTGGCTGCTGCAGTTCATGCTGCAGGGCGGTGACTTCAC
TCACGGAACCGGCACGGGAGGCGAGTCCATCTACGGTGGAAAGTTTGATG
ACGAGGCCTTCCCTGTGAGTCTTCACCTCGCGTTGGCATTTTCCTGTGAG
ATCCGTACGACGCGTCCGGGAGCACCAGCTTGCCCACTTTTGTTGTGATG
GCTGCAAGATTGGGCTTTGCAAGAGACAAGTAGATTTCCCAGTGCATAGT
GTTGGAGAACATTGCAGACATTGCATGATGGATTCACAGATTCAACCAAA
AAGCGCGTACGAGATGGTTCACTGTTTCGCACGGGGTAAAATGGTTGCGC
GATCTCTCACCCATGGCCATGCTGCCGTGCACCCGACCAGAGTAACACCG
CGGCAGAGGAGCGGCATGCTCGCGGTATTGGCGTCGACATTTCACCTTCA
CCCTTTGTCATTACAGCACCCCACACTACGTGGTTGGCATGATGCTCGCT
GGCCAGGAAGGTTGTAAATCGCAACTCGAATGTGATGGGCCAGGATTGGT
GAATCGTTAGAAGTGCCAGCGAATCGGAAGAGTTGCGGCAAACTGCAACT
CGTTCCCGCGAAAACCCGGTCGTTTGGATTTGACGTGTGTGTTTGTGTGT
GTTTGTGTGTGTGTTTGTGTGTTTGTGTGTGTGTGTGTGTGTGTTGTTTC
TACCGATGTCCCCTACTGGTCGTTGAACTTTTCTTTCTCGGCGAGCGAAG
CTGATCAGCATCAGACGGGTGTAAAGTGTCCACACCGCAGCATGTTTGCA
TTCCTTGCGTAAGAGTGGGAGTGTCGTTTTCCTCCCGAATACTCCCGAAT
ACTTCTTTGACACAAGACACGTATTCGTTTGGTGGTGTTGCCTCTCTTTC
CCAAAGACGGGCAGGTACTGCAACGGTAGTGTGGTGATTTGCTGCTTCTG
TATGTGTGTCCTTGAGAAATACGAGTAAACTTGTCTCCTTTTCTGGCTTT
TACTACTTCTTGTCTTCAATTTTCAGCCTGAGCTTATTCACGACAAGCCT
GGAGTACTGTCTATGGCGAACTCGGGCAAGAACACCAACGGCTCCCAGTT
CTTCATTTGCACCGTGCCCACGCCGTGGTTGGACGGAAAGCACGTCATTT
TCGGGCAGGTGAGATGGCCTTAAGGGTTAGCCTTAAAATCGAATGCTTCT
TCGCGAATCTGCACCAGGTCAATCCCTTTCTCCCCCAGGCCCCCAGGCAT
TTCTCCTGTGCGGTACCGGGGTATGATACTTTCGCAAGTTGATAGAAGTT
GCTTCGGGGGAGCTTCTTGGATATAGATCCCAGCGAGTTTTGTGTGTTCA
GGAGGGGGGGAATAAAACAGCTACGCGGTCCGAGAACGCTTGTGTATGTT
AGTTCGGGGGGAAGAGATGGGATTTCAGCAAGAGGACACACTAAAGAGCA
TGGTTTGGATAACTTGTTCTTTTTGTGCTGTCGAGTTCTCCCGAGTGTTG
AGACGCGAAACGAGGACACCACACCACACGACCACGAGGAGACGACAAAA
TGCACCATCGTTGTTATACGTGCAACCCATTCGTAGACATTAAACAGTGC
GTACACGAGATGGTTTCATCATGAAAAATGGTGTGGAACAGAGGCGGTTG
TCTGGCTGTGCGGTCGCCGCCTGAAACGTGCAGGTGTAGATGTAGAACGA
TTGCAATTTGGCATCAAGGCAACCGCGTGGATTCGTGAAACGTTCAGTGG
CGGTGTCGGTCAACCCTGGGCCGAGGCAACGCAGATGCAGATCTGGGTTC
CATTATCTCTTGTTCACCTTTTGTTGCTTTGCGTAGCATTTTTCAATCAA
AAGTCGACGGCCAAACATTTGCAGGGGAGAGTGGAGAAATCACGGTCTGC
ATTTAAGCATAAGTGCCTCCGCACTCTGGTTTATGTTGTTCCGTCGGTCA
GGTGGAGCCGGACAGCATGGACCTGGTAAAGACTATAGAGAAGCTCGGCA
GCCGAAGCGGTGCCCCCTCCGACAAGGTTGAAATCGCGGATTCCGGAGAG
CTCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1211:3262..6917-

>mRNA_H-canaliculatus_F_contig1211.1830.1 ID=mRNA_H-canaliculatus_F_contig1211.1830.1|Name=mRNA_H-canaliculatus_F_contig1211.1830.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1212bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1211:3262..6917- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGAAAATATTCCAGACCGTGGCCGTCGCGGCGGCGACTGTGTTCAG
CACCGCCTATGCGGCTGGCAGCGCGACTGACATGGTGAAAATATTCCAGA
CCGTGGCCGTCGCGGCGGCGACTGTGTTCAGCACCGCCTATGCGGCTGGC
AGCGCGACTGACGTGACCCACCGTGTGTTCTTCGATATCAACATCGCCGG
AAAGCCGGCTGGCCGCATCGTCATGGGGCTGTTCGGTAACGCCGTGCCCA
AGACTGTCGAGAACTTCCGGTGACCCACCGTGTGTTCTTCGATATCAACA
TCGCCGGAAAGCCGGCTGGCCGCATCGTCATGGGGCTGTTCGGTAACGCC
GTGCCCAAGACTGTCGAGAACTTCCGGCAATTGTGCACTGGGGAGGCAGG
GCCCGGAAAGGTATACCGGAAGCCGCTGCACTACAAGGGGTCTGCTTTCC
ACCGCATCATCCCGCAGGCAATTGTGCACTGGGGAGGCAGGGCCCGGAAA
GGTATACCGGAAGCCGCTGCACTACAAGGGGTCTGCTTTCCACCGCATCA
TCCCGCAGTTCATGCTGCAGGGCGGTGACTTCACTCACGGAACCGGCACG
GGAGGCGAGTCCATCTACGGTGGAAAGTTTGATGACGAGGCCTTCCCTTT
CATGCTGCAGGGCGGTGACTTCACTCACGGAACCGGCACGGGAGGCGAGT
CCATCTACGGTGGAAAGTTTGATGACGAGGCCTTCCCTCCTGAGCTTATT
CACGACAAGCCTGGAGTACTGTCTATGGCGAACTCGGGCAAGAACACCAA
CGGCTCCCAGTTCTTCATTTGCACCGTGCCCACGCCGTGGTTGGACGGAA
AGCACGTCATTTTCGGGCAGCCTGAGCTTATTCACGACAAGCCTGGAGTA
CTGTCTATGGCGAACTCGGGCAAGAACACCAACGGCTCCCAGTTCTTCAT
TTGCACCGTGCCCACGCCGTGGTTGGACGGAAAGCACGTCATTTTCGGGC
AGGTGGAGCCGGACAGCATGGACCTGGTAAAGACTATAGAGAAGCTCGGC
AGCCGAAGCGGTGCCCCCTCCGACAAGGTTGAAATCGCGGATTCCGGAGA
GCTCTGAGTGGAGCCGGACAGCATGGACCTGGTAAAGACTATAGAGAAGC
TCGGCAGCCGAAGCGGTGCCCCCTCCGACAAGGTTGAAATCGCGGATTCC
GGAGAGCTCTGA
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