mRNA_H-canaliculatus_F_contig1210.1826.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1210.1826.1
Unique NamemRNA_H-canaliculatus_F_contig1210.1826.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1210.1826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1210contigH-canaliculatus_F_contig1210:28056..28904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size551
Cds size387
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1210.1826.1prot_H-canaliculatus_F_contig1210.1826.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1210 28219..28904 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928923.7526648-UTR-H-canaliculatus_F_contig1210:28055..282181622928923.7526648-UTR-H-canaliculatus_F_contig1210:28055..28218Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1210 28056..28218 -
1696845614.174764-UTR-H-canaliculatus_F_contig1210:28055..282181696845614.174764-UTR-H-canaliculatus_F_contig1210:28055..28218Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1210 28056..28218 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928923.7705534-CDS-H-canaliculatus_F_contig1210:28218..284881622928923.7705534-CDS-H-canaliculatus_F_contig1210:28218..28488Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1210 28219..28488 -
1696845614.1854448-CDS-H-canaliculatus_F_contig1210:28218..284881696845614.1854448-CDS-H-canaliculatus_F_contig1210:28218..28488Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1210 28219..28488 -
1622928923.7860289-CDS-H-canaliculatus_F_contig1210:28787..289041622928923.7860289-CDS-H-canaliculatus_F_contig1210:28787..28904Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1210 28788..28904 -
1696845614.1954937-CDS-H-canaliculatus_F_contig1210:28787..289041696845614.1954937-CDS-H-canaliculatus_F_contig1210:28787..28904Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1210 28788..28904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1210.1826.1

>prot_H-canaliculatus_F_contig1210.1826.1 ID=prot_H-canaliculatus_F_contig1210.1826.1|Name=mRNA_H-canaliculatus_F_contig1210.1826.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=129bp
WEVAVAFQTRVLFILDQEGTTYKTCRLTLKTRFGRVGPEDRGARVTSFVL
SVLSRRRGEGGEGGGGGGKQGRRAGRGGEGSGRGGEFSQGLGTGVLPRGN
DVWQGNRRCCHHLRRVCSGSIEFHSYRR*
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mRNA from alignment at H-canaliculatus_F_contig1210:28056..28904-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1210.1826.1 ID=mRNA_H-canaliculatus_F_contig1210.1826.1|Name=mRNA_H-canaliculatus_F_contig1210.1826.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=849bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1210:28056..28904- (Hapterophycus canaliculatus Oshoro5f female)
TGGGAAGTCGCCGTCGCCTTCCAGACCAGGGTCCTGTTCATCCTGGACCA
GGAGGGCACTACGTACAAGACCTGTCGCCTCACGCTGAAGACACGGTTCG
GACGCGTCGGCCCCGAGGTTAGAGCAGGCGGGAAGTAGCTGTGAGGACGC
GTGCTGGTCAACTCTCCTGGAGCCCTCTCATAAATAATCCTGATCCCCGC
CCTAAATATCGACGCTCGTGCATGCCTCATCCGATCAGTAACGAAGGCAA
AACACCAATGTTTCTGTTATTCCGTCGTTGCCAGTCAAATCAGCGATTGA
ACCGGCAGAAGAAAGGTCAAATCCATCCACGGCTGAACCTCGCTTTGTCC
TGGACTCCGTGCTCGCTTCTTTCCACCCCTTATGTTTGGTTCACTCTCTC
CGCGCATCGTCGATAGGACCGAGGAGCTCGAGTCACTTCCTTCGTCCTCT
CCGTCCTCAGTCGTAGACGAGGAGAAGGAGGAGAAGGTGGTGGCGGAGGA
GGAAAACAAGGAAGACGAGCCGGTAGGGGAGGAGAAGGAAGCGGAAGAGG
AGGAGAATTTTCTCAAGGACTGGGAACTGGCGTCCTCCCCCGCGGGAATG
ATGTTTGGCAAGGCAATCGCCGATGCTGTCACCACCTTCGCCGTGTCTGC
TCCGGCAGCATCGAATTCCATTCATATCGAAGATGACGCCTTTGTGCTTT
CCTTCGTGAATTTAACGTCGATGCAGGGCGGTGGTGACCTCCTTTAGGAC
CCGGTCTCGCAATTGGCCACCAGGTTGAGTCAACGCTTGGACGCCACCTC
TTGCCTTCAGGCCCTAGATGTTAGTGGGTACCGACGTGACCGTGAGAGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1210:28056..28904-

>mRNA_H-canaliculatus_F_contig1210.1826.1 ID=mRNA_H-canaliculatus_F_contig1210.1826.1|Name=mRNA_H-canaliculatus_F_contig1210.1826.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=774bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1210:28056..28904- (Hapterophycus canaliculatus Oshoro5f female)
TGGGAAGTCGCCGTCGCCTTCCAGACCAGGGTCCTGTTCATCCTGGACCA
GGAGGGCACTACGTACAAGACCTGTCGCCTCACGCTGAAGACACGGTTCG
GACGCGTCGGCCCCGAGTGGGAAGTCGCCGTCGCCTTCCAGACCAGGGTC
CTGTTCATCCTGGACCAGGAGGGCACTACGTACAAGACCTGTCGCCTCAC
GCTGAAGACACGGTTCGGACGCGTCGGCCCCGAGGACCGAGGAGCTCGAG
TCACTTCCTTCGTCCTCTCCGTCCTCAGTCGTAGACGAGGAGAAGGAGGA
GAAGGTGGTGGCGGAGGAGGAAAACAAGGAAGACGAGCCGGTAGGGGAGG
AGAAGGAAGCGGAAGAGGAGGAGAATTTTCTCAAGGACTGGGAACTGGCG
TCCTCCCCCGCGGGAATGATGTTTGGCAAGGCAATCGCCGATGCTGTCAC
CACCTTCGCCGTGTCTGCTCCGGCAGCATCGAATTCCATTCATATCGAAG
ATGAGACCGAGGAGCTCGAGTCACTTCCTTCGTCCTCTCCGTCCTCAGTC
GTAGACGAGGAGAAGGAGGAGAAGGTGGTGGCGGAGGAGGAAAACAAGGA
AGACGAGCCGGTAGGGGAGGAGAAGGAAGCGGAAGAGGAGGAGAATTTTC
TCAAGGACTGGGAACTGGCGTCCTCCCCCGCGGGAATGATGTTTGGCAAG
GCAATCGCCGATGCTGTCACCACCTTCGCCGTGTCTGCTCCGGCAGCATC
GAATTCCATTCATATCGAAGATGA
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