mRNA_H-canaliculatus_F_contig121.1824.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig121.1824.1
Unique NamemRNA_H-canaliculatus_F_contig121.1824.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig121.1824.1 vs. uniprot
Match: A0A6H5KKW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW1_9PHAE)

HSP 1 Score: 426 bits (1096), Expect = 6.420e-131
Identity = 272/444 (61.26%), Postives = 306/444 (68.92%), Query Frame = 3 
Query:  156 EMEPSQLTRGMDVDIGMGLGDDLGGFEGFDAMFAEPNSTTDFFKFCALDDAQHHD-----SATTSAFKSPPSPAGTFGQQNE-RDIAGEGWNTGGQQQ--IEAWPPLTCPPSHERVTPNLLPQSSGKPRARKRHDEDEA---EESAFPVIKRRSSTASL-INPGPSPTA---EALEKSHSFCVTSTASGGWTPATS-QQEGVARHGGSQG--QQHGVRMPSPPGGAIKVNTDVTSGKMPPPRISVFMSSSSRRRGAANSPALGASLSNHNGPSATSRSASAPLLASTPGLAVGYGRSCQLEPTMDRTASAQAQRLKDLRITMRGRSVAEKYVVEHNPAVVAMGSPHHPNSTSALLLGXXXXXXQFDEAAA-----PTLRRASSVGALTIAGNGQIMSTSPVLSSTGRIIQSCELSDRVGDGGRRRNLVCKVFGSGGGR*VRPES 1418
            E EPSQL +GMDVDIGMGLGDDLGGFEGFDAMFAEPNST+DFFKFC ++D Q        + T SAF+ PPSPA  F  Q +  D   E W  G QQ   I+AWPP       + V PNLL    GKP+ARKRHDEDEA   +ES FPV+KRRSSTAS+ +NP P PT+   + LEKSHSFCVT TAS GW PA S QQ GVARH GS    QQ GV   SPPGGAIKVNT+VTSG + PPRISVFMS+S R                   P+      S  ++ + PG   G      LEPTMDRTASAQAQRLKDLRITMR RSVAEKYVV+H PAVVAMGSPHH NSTSALL             +A     P+LRRAS+VGALTIAG+ ++MSTSPVLSS+GRIIQSCELSDRVGDGG+RRNLVC+VFGSGG   +RP S
Sbjct:    2 ETEPSQLIKGMDVDIGMGLGDDLGGFEGFDAMFAEPNSTSDFFKFCEIEDTQQQQHQQGMAITNSAFQGPPSPASMFAHQPKVSDFGQESWVPGEQQHLPIQAWPPTISSEPTQCVNPNLLLPIGGKPKARKRHDEDEALVSKESVFPVMKRRSSTASISMNPSPPPTSSQQQGLEKSHSFCVT-TASAGWAPAVSHQQPGVARHVGSSQPPQQGGVA--SPPGGAIKVNTNVTSGTVRPPRISVFMSNSGRXXXXXXXXXXXXXXXXXAAPAP-----SPSMMPTAPGSYSGG----VLEPTMDRTASAQAQRLKDLRITMRDRSVAEKYVVDHTPAVVAMGSPHHLNSTSALLFSEDDHFTATASGSAAGPTVPSLRRASTVGALTIAGS-EVMSTSPVLSSSGRIIQSCELSDRVGDGGQRRNLVCRVFGSGGSPFMRPAS 432
[Close]
BLAST of mRNA_H-canaliculatus_F_contig121.1824.1 vs. uniprot
Match: D7G817_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G817_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 1.470e-66
Identity = 153/250 (61.20%), Postives = 171/250 (68.40%), Query Frame = 3 
Query:  156 EMEPSQLTRGMDVDIGMGLGDDLGGFEGFDAMFAEPNSTTDFFKFCALDDAQ--HHD---SATTSAFKSPPSPAGTFGQQNE-RDIAGEGWNTGGQQQ--IEAWPPLTCPPSHERVTPNLLPQSSGKPRARKRHDEDEA---EESAFPVIKRRSSTASL-INPGPSPTA---EALEKSHSFCVTSTASGGWTPATSQQE-GVARHGGSQGQQHGVRMPSPPGGAIKVNTDVTSGKMPPPRISVFMSSSSR 857
            E EPSQL +GMD+DIGMGLGDDLGGFEGFDAMFAEPNST+DFFKFC ++D Q  HH    + T SAF+ PPSPA TFG Q +  D   E W  GGQQQ  I+AWP  T     +RV PNLL  S GKPRARKRHDEDEA   +ES FPVIKRRSSTAS+ +N  P PT+   E LEKSHSFCVT TAS GW PA SQQ+ GVA                     IKV T+VTSG + PPRISVFMS+S R
Sbjct:    2 ETEPSQLIKGMDMDIGMGLGDDLGGFEGFDAMFAEPNSTSDFFKFCEIEDTQQQHHQQDMAITNSAFQGPPSPASTFGHQPKVSDFGQESWIPGGQQQLPIQAWPLTTSSEPTQRVNPNLLLPSGGKPRARKRHDEDEALVSKESVFPVIKRRSSTASISMNRSPPPTSSQQEGLEKSHSFCVT-TASAGWAPAVSQQQAGVAXXXXXXXXXXXXXXXXXXXXXIKVTTNVTSGTVRPPRISVFMSNSGR 250
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig121.1824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKW1_9PHAE6.420e-13161.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G817_ECTSI1.470e-6661.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig121contigH-canaliculatus_F_contig121:56688..62621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size5584
Cds size1245
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig121.1824.1prot_H-canaliculatus_F_contig121.1824.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig121 60869..62463 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928923.6352706-UTR-H-canaliculatus_F_contig121:56687..608681622928923.6352706-UTR-H-canaliculatus_F_contig121:56687..60868Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig121 56688..60868 -
1696845614.1405606-UTR-H-canaliculatus_F_contig121:56687..608681696845614.1405606-UTR-H-canaliculatus_F_contig121:56687..60868Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig121 56688..60868 -
1622928923.69455-UTR-H-canaliculatus_F_contig121:62463..626211622928923.69455-UTR-H-canaliculatus_F_contig121:62463..62621Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig121 62464..62621 -
1696845614.1660495-UTR-H-canaliculatus_F_contig121:62463..626211696845614.1660495-UTR-H-canaliculatus_F_contig121:62463..62621Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig121 62464..62621 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928923.6515124-CDS-H-canaliculatus_F_contig121:60868..616961622928923.6515124-CDS-H-canaliculatus_F_contig121:60868..61696Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig121 60869..61696 -
1696845614.1490312-CDS-H-canaliculatus_F_contig121:60868..616961696845614.1490312-CDS-H-canaliculatus_F_contig121:60868..61696Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig121 60869..61696 -
1622928923.6749344-CDS-H-canaliculatus_F_contig121:62046..624631622928923.6749344-CDS-H-canaliculatus_F_contig121:62046..62463Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig121 62047..62463 -
1696845614.157602-CDS-H-canaliculatus_F_contig121:62046..624631696845614.157602-CDS-H-canaliculatus_F_contig121:62046..62463Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig121 62047..62463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig121.1824.1

>prot_H-canaliculatus_F_contig121.1824.1 ID=prot_H-canaliculatus_F_contig121.1824.1|Name=mRNA_H-canaliculatus_F_contig121.1824.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=415bp
MEPSQLTRGMDVDIGMGLGDDLGGFEGFDAMFAEPNSTTDFFKFCALDDA
QHHDSATTSAFKSPPSPAGTFGQQNERDIAGEGWNTGGQQQIEAWPPLTC
PPSHERVTPNLLPQSSGKPRARKRHDEDEAEESAFPVIKRRSSTASLINP
GPSPTAEALEKSHSFCVTSTASGGWTPATSQQEGVARHGGSQGQQHGVRM
PSPPGGAIKVNTDVTSGKMPPPRISVFMSSSSRRRGAANSPALGASLSNH
NGPSATSRSASAPLLASTPGLAVGYGRSCQLEPTMDRTASAQAQRLKDLR
ITMRGRSVAEKYVVEHNPAVVAMGSPHHPNSTSALLLGDDDQDDQFDEAA
APTLRRASSVGALTIAGNGQIMSTSPVLSSTGRIIQSCELSDRVGDGGRR
RNLVCKVFGSGGGR*
back to top

mRNA from alignment at H-canaliculatus_F_contig121:56688..62621-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig121.1824.1 ID=mRNA_H-canaliculatus_F_contig121.1824.1|Name=mRNA_H-canaliculatus_F_contig121.1824.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5934bp|location=Sequence derived from alignment at H-canaliculatus_F_contig121:56688..62621- (Hapterophycus canaliculatus Oshoro5f female)
CGAAAAACATATAAATCGACCGACTCTGGTGTAGAAGCTCGAAATCAAGA
AACAATTACTTGCTGTGCGCTGCCCGACTCCCTGCAATCCACACCACACG
CCCGGACGGCTGGTGTTGAAGATATCAATCGGTCAACGCACCACAGGAGA
CTACGGAGATGGAGCCTTCACAACTAACGAGAGGGATGGATGTTGATATT
GGTATGGGTTTGGGCGATGACCTGGGAGGATTCGAAGGGTTTGACGCTAT
GTTTGCTGAGCCGAACAGCACGACCGACTTCTTCAAGTTCTGCGCGTTAG
ACGACGCCCAGCACCACGACTCGGCGACCACGTCCGCTTTCAAGTCGCCG
CCATCCCCGGCTGGCACGTTTGGGCAGCAGAATGAGCGCGATATCGCGGG
GGAGGGCTGGAATACTGGCGGGCAACAGCAGATTGAAGCGTGGCCGCCTC
TGACGTGCCCCCCATCTCACGAGCGAGTGACCCCGAATCTGCTTCCACAA
AGTAGTGGCAAGCCAAGGGCGCGAAAGAGGCACGATGAGGACGAGGCGGA
GGAGTCAGCCTTCCCGGTCATCAAGGTGCGTGCGGTTTGCCGTTTTATTT
CGTTTGCTGCCGACTGATCCAGCGCCACGTCGCTCTTTTTTTTCGGCTCT
CACTCTTGGTTTGCTCTTGCATCTGGTCTCCCCCCCCCTGCCAGAGGGTG
ACTTATTCCAAGTTTGAGCCTGCTGCTTGCGTGTGTGTATGTGTGTGTTT
GTTTGTGTGTGTGTGTATGTAATGTCGGTTGTCTGTGTTATGTCTTAGCC
TGTCCGGTTTTCTCGTTAGAGAGAAACCGCTGTCTCCTCTCCGGCCATTC
CCTCCTGACCTCCACGCAATCTCTATATTGTGCCTGTGCTTCGTTCTGAT
GTCTGTCCTGTTCTTTGTTCTGTAGCGTCGCTCGTCGACGGCGTCGCTGA
TAAACCCAGGCCCATCACCAACAGCGGAAGCGTTGGAAAAAAGCCACAGC
TTTTGCGTCACTTCGACCGCCTCGGGAGGCTGGACCCCCGCGACATCGCA
GCAGGAGGGTGTGGCGAGACATGGGGGTAGCCAGGGCCAACAGCACGGGG
TACGGATGCCTTCGCCGCCAGGAGGAGCGATCAAGGTCAACACCGACGTG
ACCTCGGGCAAGATGCCACCCCCTCGTATTTCGGTCTTCATGTCGAGCAG
CTCGCGACGCCGGGGAGCGGCGAACAGCCCCGCTCTCGGTGCCTCGTTAT
CTAACCATAACGGCCCGTCGGCGACCTCGCGATCCGCGTCCGCGCCTTTG
CTGGCGTCCACGCCCGGATTGGCGGTGGGCTACGGGCGGTCTTGCCAGCT
CGAGCCCACGATGGACCGTACCGCGAGCGCGCAGGCCCAACGGTTGAAGG
ACCTCCGCATTACCATGCGCGGGAGGAGCGTGGCCGAAAAGTACGTGGTG
GAGCACAACCCGGCGGTCGTTGCAATGGGCTCGCCCCACCACCCCAACTC
CACCTCAGCGTTGCTGCTGGGCGACGACGATCAGGACGATCAGTTCGATG
AGGCGGCGGCGCCGACGCTGCGGCGAGCGAGCTCGGTCGGGGCGCTCACG
ATCGCTGGAAACGGGCAGATTATGTCGACGTCCCCCGTTCTCTCTTCGAC
CGGGAGGATTATCCAGTCGTGCGAGCTCTCCGACCGCGTCGGAGATGGAG
GACGCAGGCGTAATTTGGTGTGCAAGGTGTTCGGGTCTGGTGGAGGGCGC
TAGGTGAGACCAGAGAGTTGTACAAAACGTGGACTGAAATCAAGGACAAC
GGATGTCTTCCCAGGCGCATGTAGTGATGCTTCGCGACGAGAGAGCCGGC
AGTGGCAATATGGACAAGGTGGCCTTCTCACGCGCATGTTACCCTTTCTT
TAGTGGTCGCCTTGTACAACTTTCGTCGCCTGGGACGGGGGGCATGTTTT
ACTTTCCACCCCGCAACTTCAGGGGTGATCGACGGAATTCCCTAGCCCTG
CATAGCAAATCAACACGTCGAGAGTCGGATGCTACAAACGCCGTGAACAC
TCGACGTGACGATACGACGATACGCTTAGCTTTCTTCAAAACGTGCTCTT
TCATTTTGCCCTTCTGGATTTCGATATATTTGAGGGTCTTGTTGCGCCGG
TTGTTTCTTTCGAATCCGGCTGTTCTAAATATTTTGGTTTTTTCGGGATG
TCGGGGCAGCCGCATCGGGATAAAGAGTCGCTTGTCTCCTGTTGGAAGAT
AAAAGATGAACGCTCGAGGAATGAAAAACTTGCGAGATGCCGAGGGTCGA
ACAGAACCGATGGCACGATGTTTCCATTCCATCTGCACATGCCAGGCCTG
CATGTCTCCTCAAATCACTCCCGAGTTTTTGCTGAGAGCACATTTGTCCC
GCGGTCTATTTATATATTTACGTCCGTGGTCACGCCGCCCGCTGATTTTG
AAAGCGAGACTGGTTCGGCACACCTTACATTCGAAAATTAGATATCAGAC
AACCCTTGGTTTCCAGCTTCAACTTGCGAGCGTTCGAGCTGTCTCATTCC
CATGCGGAGATGCCTCCCGTCGTGAACTTCGTTTCGTATCTCAATAGTAG
TGAGTGAGGTGCGACTGAGCATAAACCGCGGGAAGATGTCGGACAGATCT
CTCGTCTGTGTGAACCCCTCCGAAACTTGCCAAGAACGAAATATAAAAGC
AATCCGAAAATCAAACCTGTTGTGTCTCTCCAGTCATGAATGTTCCTTGG
TTATTTGCCGGCTTCCTGCTGTTTTCGGGTCGGGAGGGTCGGGCTGTCGT
GTTTCTCGATTGGCACATTTTGAGGCGAATTAGCTGAGATCAACCGCAAG
TCAAAGCTCAGCTAGATCTTGGACCGCCTCCAACCATCAACGTTCATTGA
GGCGAGTACACACAACGCAACGAAGTAGAATTTCATTTAGAAAATCAGAT
ACCCAGCTCAAGGCACCAAAACTTGAGAGATGTTTTTCTTTTGTGCGACA
ACAAATTCGTGGTGGAACATTAACCCACGACCGGGGTTCCCCTCTAACTT
GGCCGCTCAGCAACAGGATGACCATGCTCTCGAGATTGTGGTTTTTATTT
CTCCCTCTTCTGAAGATTGAGCGTGGTTCGTTGTGCCTCGCGTAAGAAGA
CTCATGCGAGGCACCTGTCCGTGGAAGATGAACATGTGATGGTCGACAGT
GGTGGAAGGGCTCCCAAAGACTAAATTTCATATTGGGCCGATCCCCATCA
AGCGCATTGTTGGTTTTAACCTTGGCATGAGCTATTCCAACAGAGACACA
CACACTTACGTGGATCAAGCAGCGTTTTCACCGGAAATTCCTTGCCCGCC
CCGCCCTCGCTCTCTACCGCAGATGTCAAAATTACAATTAAGCCGGCTGG
ATCATCGGTACCTTGCTGCGCAGGGGCAGTGCGTCGACTGCCTTGCTGAA
AGAGTCAACAGGATGCACCCGGCCAGGGGAGACGAGCGTACAGCGTACAA
GCCTTCTTGTTTTCTTTTTTTAATTATGAGCGACGGAAGAAGAAACGCTC
CGTCCACCACCTTAGGCCCTCCCCGCGTTCCTCCTGAAGCGCGTGACCGC
CTGCTGGAAGGCTCCACCGCGCCGGTATCGTTTTCTGATCACATCTTTCA
TGCACATAGATTGCCTCCTCCCTGTCGCTTTTTGACCCCCCTGTCGTCGG
GCTGGCCCGAGTCGTCACGGACAGTCAGCTTTCTCCATTCAAAGGCTCGT
TGCGTTTGCCCTTTGAATGTAATCCTCGTCCTGATGTTTTTGTCGTCGAG
TTCGTTTCTTCGTCTAAGTGATTGAAGAGCTGTTCCTGGATTTGGTCAGC
GCCCCCCCCCTGATTCAAGAAGCGCATGAATACAGGGCCCAGCGCGGACG
GTTGATGCTAAGATGTGCCACAGGCAGCAGTGGTATCAGCCTGGGCTGTA
GCAATCCGAAGCCAGTGAAGGCGGGAAGCGTGCGCTACTCCCTTGTCTCA
AGTCGCGGGAGGGGCTCAAGTTCCGTTGTATATACTAAATAAACTCTTTT
TGATATGTTTTTGAAATTGTGTCGATGTTCCTTGGGAGAGCGAACGGCGG
CGGTAACGACTTGCAACGCGGGGATCCTACTTGTGGTTGCTCAAAATTCT
GCGGGGTTCAGGTGAATGATGTGCTATTCCCGCCCCTTGCAGCAGGAGGT
AATCGAGTAATTTGCAGCGAAGTAATGTAGTGTAAAGTCGGCGAAGTCCG
TTGCGACGTCCGCGCACATCCGAAGTCTAACCCAGTCGAATCTTGAACGT
GTTCTGTCAAGTAAACTGGCTCAGTCTACGAATGCTTTCGCGCCGTGTAG
AGAGACATGGAGGCTGTTGCTTTGTTGCGCCCACAGGACTTAGCGTGCGA
CTCGTCCTGTGGATGGAGGCTGACGCAGTTTTGTTTTTCGTGGGGAGCAT
AGTGGTGATGGTGGACACGATGAAAGGAGCCTTAAAAGACGAGCTGAGCT
AGTATCTTGTCTTCGGGATACGGCGTCGCAACTTCCAGGTTCGATTTTGA
GTACAGCAATCCGTTGAATTTAACAGAAAGAGGCTTGGTTCGGACCTGGA
AAAGTTGTGTGAAAATTGGCGAACATTGGATATTCGAGAAGGGCGCACTT
TGTATTTTGGTTATGCCCCCGAATTATTGCCGCGTTTTGCCTCCTTTGTC
ACTGGCACAAGGTCTTCAGACGGGTCGGTGAAAATGGTTGCAGTGGGCCC
GCGAGTATCTCGAAAAGATCGTTAAAATATGCCCTTCTTGTGTGGAAGAT
GTGCGGTCATCGAGTATGGTGTAGTTCGGATTGAGTTGGGTTTTGTCTTC
GGCCCGTGGCACCAAAAGGAGGAGAAGCAAAAACGCATAAACGGGGTGCG
TGTCACTAGAAGCGAGTCTCTGCGCCTCGCAGGCGTTGGCGACCACCGGG
AAGACATAATTATAGCTTTCCAATGAAGAGAGAGGTCGGCCTAGACAAGA
TGAGTCGAGATTGCTGCGGTTGAAGGTGGAGAGGAGTCCGAACAGTTCAT
TGAGGTCGTGTGTTTTGAGCGCCGTGTGCCGGTGAGTCATGCGCTGCATG
TGTCAGAGAGGGCTTTCTCGTATCGTGTAAAGGTCGGATGTTTATATAGT
AGCACGGCCTCTCTTCGTGGTTGTCTTTTCTTACTGATGAGTTCCCGGGC
GTTTGTGCGCGTGCGCCGAGAGACGAGAAATCACGGAAGACGGACGCAAG
GAATCCCGTCCACGCTCATCAACAGGTAGAGAAGAACATCAGGGTTGTCA
CAGACAAGCGGTAGTCAAGGCAGTAATTGGGGTTGGTGTGCAGTGTTTGT
CAAGTCAAAAGCCGCGGGACAGCCGCTAGCACGTTGGTTTCTTGGAGAGT
TTGACGGGAAAACATGTCGCAGGGTTTCCATGTTAGGGGAGAACACGGTT
TGGTATCATAGGGCGTCAGGATTTTGCCGCGAGTAGCTTTTTCTTGGTCG
GAAAACGCACTGTGGAAAATAATTATAAGGGTGAAGCTCCAATCTTTTTG
ACAGCCGGTGAATCGCAATAATAACAGGGGCCATGCGGTCAACGGATGTA
GATTGCCACCTTTCTGAGCTTCTGCCGGGGTCGTGTCACCAGGACAACTC
GCGGGAACCGGGAGACCAAGAAAACTGCTTGATTTTACACATTTTGCAAC
AGGCGAAACGGTTTCGTCACCCCCACACTGTTCATCGCCTTGATGACTTT
AGCCTGTTTCGTTCCCGCGCTGGTTCGTGGCCAATCACACCCCGCGCGTG
CCCGCAGGCGTGTTTCTTGCGGCGGAGAAAGGATAGAAAGGGTGTGACTC
GTAAGCCTGTCAACCGTCACAACGACCACAAGTTTTTGTCACGCGTCTTC
CTCGTGCCGGCGATGGTTGCGGTACGTACGAAAT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig121:56688..62621-

>mRNA_H-canaliculatus_F_contig121.1824.1 ID=mRNA_H-canaliculatus_F_contig121.1824.1|Name=mRNA_H-canaliculatus_F_contig121.1824.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2490bp|location=Sequence derived from alignment at H-canaliculatus_F_contig121:56688..62621- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGCCTTCACAACTAACGAGAGGGATGGATGTTGATATTGGTATGGG
TTTGGGCGATGACCTGGGAGGATTCGAAGGGTTTGACGCTATGTTTGCTG
AGCCGAACAGCACGACCGACTTCTTCAAGTTCTGCGCGTTAGACGACGCC
CAGCACCACGACTCGGCGACCACGTCCGCTTTCAAGTCGCCGCCATCCCC
GGCTGGCACGTTTGGGCAGCAGAATGAGCGCGATATCGCGGGGGAGGGCT
GGAATACTGGCGGGCAACAGCAGATTGAAGCGTGGCCGCCTCTGACGTGC
CCCCCATCTCACGAGCGAGTGACCCCGAATCTGCTTCCACAAAGTAGTGG
CAAGCCAAGGGCGCGAAAGAGGCACGATGAGGACGAGGCGGAGGAGTCAG
CCTTCCCGGTCATCAAGATGGAGCCTTCACAACTAACGAGAGGGATGGAT
GTTGATATTGGTATGGGTTTGGGCGATGACCTGGGAGGATTCGAAGGGTT
TGACGCTATGTTTGCTGAGCCGAACAGCACGACCGACTTCTTCAAGTTCT
GCGCGTTAGACGACGCCCAGCACCACGACTCGGCGACCACGTCCGCTTTC
AAGTCGCCGCCATCCCCGGCTGGCACGTTTGGGCAGCAGAATGAGCGCGA
TATCGCGGGGGAGGGCTGGAATACTGGCGGGCAACAGCAGATTGAAGCGT
GGCCGCCTCTGACGTGCCCCCCATCTCACGAGCGAGTGACCCCGAATCTG
CTTCCACAAAGTAGTGGCAAGCCAAGGGCGCGAAAGAGGCACGATGAGGA
CGAGGCGGAGGAGTCAGCCTTCCCGGTCATCAAGCGTCGCTCGTCGACGG
CGTCGCTGATAAACCCAGGCCCATCACCAACAGCGGAAGCGTTGGAAAAA
AGCCACAGCTTTTGCGTCACTTCGACCGCCTCGGGAGGCTGGACCCCCGC
GACATCGCAGCAGGAGGGTGTGGCGAGACATGGGGGTAGCCAGGGCCAAC
AGCACGGGGTACGGATGCCTTCGCCGCCAGGAGGAGCGATCAAGGTCAAC
ACCGACGTGACCTCGGGCAAGATGCCACCCCCTCGTATTTCGGTCTTCAT
GTCGAGCAGCTCGCGACGCCGGGGAGCGGCGAACAGCCCCGCTCTCGGTG
CCTCGTTATCTAACCATAACGGCCCGTCGGCGACCTCGCGATCCGCGTCC
GCGCCTTTGCTGGCGTCCACGCCCGGATTGGCGGTGGGCTACGGGCGGTC
TTGCCAGCTCGAGCCCACGATGGACCGTACCGCGAGCGCGCAGGCCCAAC
GGTTGAAGGACCTCCGCATTACCATGCGCGGGAGGAGCGTGGCCGAAAAG
TACGTGGTGGAGCACAACCCGGCGGTCGTTGCAATGGGCTCGCCCCACCA
CCCCAACTCCACCTCAGCGTTGCTGCTGGGCGACGACGATCAGGACGATC
AGTTCGATGAGGCGGCGGCGCCGACGCTGCGGCGAGCGAGCTCGGTCGGG
GCGCTCACGATCGCTGGAAACGGGCAGATTATGTCGACGTCCCCCGTTCT
CTCTTCGACCGGGAGGATTATCCAGTCGTGCGAGCTCTCCGACCGCGTCG
GAGATGGAGGACGCAGGCGTAATTTGGTGTGCAAGGTGTTCGGGTCTGGT
GGAGGGCGCTAGCGTCGCTCGTCGACGGCGTCGCTGATAAACCCAGGCCC
ATCACCAACAGCGGAAGCGTTGGAAAAAAGCCACAGCTTTTGCGTCACTT
CGACCGCCTCGGGAGGCTGGACCCCCGCGACATCGCAGCAGGAGGGTGTG
GCGAGACATGGGGGTAGCCAGGGCCAACAGCACGGGGTACGGATGCCTTC
GCCGCCAGGAGGAGCGATCAAGGTCAACACCGACGTGACCTCGGGCAAGA
TGCCACCCCCTCGTATTTCGGTCTTCATGTCGAGCAGCTCGCGACGCCGG
GGAGCGGCGAACAGCCCCGCTCTCGGTGCCTCGTTATCTAACCATAACGG
CCCGTCGGCGACCTCGCGATCCGCGTCCGCGCCTTTGCTGGCGTCCACGC
CCGGATTGGCGGTGGGCTACGGGCGGTCTTGCCAGCTCGAGCCCACGATG
GACCGTACCGCGAGCGCGCAGGCCCAACGGTTGAAGGACCTCCGCATTAC
CATGCGCGGGAGGAGCGTGGCCGAAAAGTACGTGGTGGAGCACAACCCGG
CGGTCGTTGCAATGGGCTCGCCCCACCACCCCAACTCCACCTCAGCGTTG
CTGCTGGGCGACGACGATCAGGACGATCAGTTCGATGAGGCGGCGGCGCC
GACGCTGCGGCGAGCGAGCTCGGTCGGGGCGCTCACGATCGCTGGAAACG
GGCAGATTATGTCGACGTCCCCCGTTCTCTCTTCGACCGGGAGGATTATC
CAGTCGTGCGAGCTCTCCGACCGCGTCGGAGATGGAGGACGCAGGCGTAA
TTTGGTGTGCAAGGTGTTCGGGTCTGGTGGAGGGCGCTAG
back to top