mRNA_H-canaliculatus_F_contig121.1823.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig121.1823.1
Unique NamemRNA_H-canaliculatus_F_contig121.1823.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig121.1823.1 vs. uniprot
Match: A0A6H5KJQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ9_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 1.560e-45
Identity = 110/205 (53.66%), Postives = 135/205 (65.85%), Query Frame = 1 
Query:   76 MTQFLRAVSESRMENALALAQTILKFEPQNGIILDYQATLAQFINNTRELGSARGGDSDDNGDDETSSSE--------GSTAETSAGPGDGESGVSTEEASSDETPEDDGGREAMAGAFSEDARGGLTEAA-----LNDDKELQHLGGVLRQLREARAAESREVASLWNEEKFAASQREVEQVLWQFLPDEAKQVAEKRAEEDAP 651
            MTQFLRAVSE+RME ALALAQTILKFEP+N IILDYQATLAQ+INN REL S R  D+D                   G+ A+ S+    G    STEEAS++E   +D   + +AGA   DA   + + A     ++D +ELQ LGGVLR LR+ R A S+E+ S W+E+KFAASQREVE VL +FLPD A+Q AEKRA + AP
Sbjct:    1 MTQFLRAVSENRMEQALALAQTILKFEPRNAIILDYQATLAQYINNERELASVREEDADXXXXXXXXXXXXXXXXXXXGNAADVSSSTATGSDDGSTEEASAEEISGED---KDVAGAPRGDAPCQVAQKASRQGSVHDKQELQRLGGVLRDLRKTREARSQEIESRWDEDKFAASQREVEAVLRKFLPDAARQAAEKRAADGAP 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig121.1823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJQ9_9PHAE1.560e-4553.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig121contigH-canaliculatus_F_contig121:52924..55668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_009810.1
Exons6
Model size675
Cds size675
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig121.1823.1prot_H-canaliculatus_F_contig121.1823.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig121 52924..55668 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928923.474359-CDS-H-canaliculatus_F_contig121:52923..530651622928923.474359-CDS-H-canaliculatus_F_contig121:52923..53065Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig121 52924..53065 +
1696845614.0750756-CDS-H-canaliculatus_F_contig121:52923..530651696845614.0750756-CDS-H-canaliculatus_F_contig121:52923..53065Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig121 52924..53065 +
1622928923.4875958-CDS-H-canaliculatus_F_contig121:53488..535601622928923.4875958-CDS-H-canaliculatus_F_contig121:53488..53560Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig121 53489..53560 +
1696845614.0842934-CDS-H-canaliculatus_F_contig121:53488..535601696845614.0842934-CDS-H-canaliculatus_F_contig121:53488..53560Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig121 53489..53560 +
1622928923.5033264-CDS-H-canaliculatus_F_contig121:53816..539331622928923.5033264-CDS-H-canaliculatus_F_contig121:53816..53933Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig121 53817..53933 +
1696845614.0960999-CDS-H-canaliculatus_F_contig121:53816..539331696845614.0960999-CDS-H-canaliculatus_F_contig121:53816..53933Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig121 53817..53933 +
1622928923.522227-CDS-H-canaliculatus_F_contig121:54392..544991622928923.522227-CDS-H-canaliculatus_F_contig121:54392..54499Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig121 54393..54499 +
1696845614.107741-CDS-H-canaliculatus_F_contig121:54392..544991696845614.107741-CDS-H-canaliculatus_F_contig121:54392..54499Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig121 54393..54499 +
1622928923.5449476-CDS-H-canaliculatus_F_contig121:54844..549751622928923.5449476-CDS-H-canaliculatus_F_contig121:54844..54975Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig121 54845..54975 +
1696845614.1199627-CDS-H-canaliculatus_F_contig121:54844..549751696845614.1199627-CDS-H-canaliculatus_F_contig121:54844..54975Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig121 54845..54975 +
1622928923.5668864-CDS-H-canaliculatus_F_contig121:55562..556681622928923.5668864-CDS-H-canaliculatus_F_contig121:55562..55668Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig121 55563..55668 +
1696845614.1314373-CDS-H-canaliculatus_F_contig121:55562..556681696845614.1314373-CDS-H-canaliculatus_F_contig121:55562..55668Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig121 55563..55668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig121.1823.1

>prot_H-canaliculatus_F_contig121.1823.1 ID=prot_H-canaliculatus_F_contig121.1823.1|Name=mRNA_H-canaliculatus_F_contig121.1823.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=225bp
MPQEDRASIAEAKETGDRYQAPLRLMTQFLRAVSESRMENALALAQTILK
FEPQNGIILDYQATLAQFINNTRELGSARGGDSDDNGDDETSSSEGSTAE
TSAGPGDGESGVSTEEASSDETPEDDGGREAMAGAFSEDARGGLTEAALN
DDKELQHLGGVLRQLREARAAESREVASLWNEEKFAASQREVEQVLWQFL
PDEAKQVAEKRAEEDAPGNHRQSRT
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mRNA from alignment at H-canaliculatus_F_contig121:52924..55668+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig121.1823.1 ID=mRNA_H-canaliculatus_F_contig121.1823.1|Name=mRNA_H-canaliculatus_F_contig121.1823.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2745bp|location=Sequence derived from alignment at H-canaliculatus_F_contig121:52924..55668+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCCCAGGAAGATCGTGCATCGATTGCCGAGGCTAAAGAGACGGGGGA
TCGTTATCAGGCCCCGCTCCGACTCATGACCCAGTTCTTACGAGCAGTGT
CCGAGAGCCGGATGGAGAATGCCCTGGCCCTCGCGCAAACAAGTATGAGC
TGTTGATCATAGACCTCTTGGGGCAGGAATGTTTACCTGACTGTAAGTAC
AATCTCAGCACTATTGCAGAAGAGGTCAAGAAACTACCACTTCCAACAAT
TCTTCGACGATGTTCTAGATGCAAACTACGAGAAAGAAGAAGACACTTGT
CAAGAACAAAAAATAAGTAGTGCTATGGCGGTCCGGAAAGAGAGGTCAAC
GAGCAGCGTTCGAGGTAACCGCGGACTCTCATCCCATCAGACTGGGCTTC
TGAGCAACAACTCTGGACCGGTACACAACTATAACTAATAATGACAACAT
GTCTCGTGTTTGCATGCGTGAGCAGAGATGCACGTGGGGCTGATTTACCC
AAATGGCAACGTACCCACACTTCGCACTTTCCCTCATCGTGCTACGCTCT
GTTTTGCCGTGACAGTCTTGAAGTTCGAGCCACAAAACGGAATCATTTTG
GACTACCAGGCTACGTTGGCGCAGTTCATCAACAACAGTGAGAAATTTCT
TCATCTGCACTATAATATACGGTGGTAGCTTTATGTAGGTCAGCTGTGCT
GCAAACGTCTTCTCGGTGCCCTCTACACTCAACCATCCCGGCCTAGGGTG
CTCATGTCATTGAACGGCCCCTCTTCGGCACTTTCTTCTGACAAGCTAAA
TTTAGATGAGCTCATCTCCCACGTATACTGACAGCATATTCCTGTGCTTT
GTGCATGTCGTTCACCGTGCCTGAAAAATCGCTCGGTGTTAAGCACGCGA
GCTGGGATCTGCTCGCGGAGGAGACTCGGATGACAACGGTGACGATGAAA
CTAGCAGCAGCGAGGGGTCCACCGCTGAGACTTCAGCGGGTCCTGGAGAC
GGCGAATCAGGTATAGATCGGCAGACTGATTTTTGAAGACCCACTCAGAG
CGATCACGCGCTCAGCGTTTCAGGCATGGCGAGATATTTCTCGCCTGTCG
GTAGACATGACACCACTTCGCGGAACCAACTGCACCTTCCGCCTTCACCT
CTTTCCTTCGTGAAGCAGCACACACCGGGACAACCAAACATTCTTCGACA
TTTCCGATCTTGTCCATCATGGCAACACGTTGCTGAAAGAGAATCCTCAC
CAGGTCCACTTAAACCAATCGTGGAAGGGTATGTCGCAGCTATGTAGGCA
TTCGCTCGGAGCAGCGAGAGACGACCGGCGGAGGATCACATATGCAATAC
GTACTCTGTTGACCTGGCCGCCTACGTTTTTGGTTGGGGAGAGTGTTCAG
ATGGCTCGAACAACAAAAGTTTACGATATGGCCCGTGCGCGTCTCGCTGT
AATCGTTGGATACACGTAGGTGTGTCAACCGAGGAAGCAAGCAGCGATGA
GACACCAGAAGACGACGGCGGGAGAGAGGCGATGGCAGGGGCTTTCAGCG
AAGACGCTCGCGGAGGGCTTACAGAGGTTTGTCAAAGGTTTCCAATCCAC
GAAACAATCTGACAAGGCTGGAGAAATTCGATGACCCTTTCTTTCAGCAA
AACCTAGAATCACCCCTAGAAAAGGGGCCCACGCACTGCCACCAGCGGTT
AAACTATGCGTGTGAGGCTGCTCAATCATCCGCCTGCGCAGGCAAAACTG
AGGCATGCATGTTTTTCCTACAACCTGCGGCAGATCTAAAAGACACCAAG
GAAAAGCTGATGGTCTATAGAACGAAAAGTATCGCCGAACGCGAAGATTC
ATCGGAAATAGCTTCGGGGGTGATGGCTCTTGCACTCCCTTCGCGTTCCT
GGTGAAAATTCACGACGATAGGCGGCTTTGAACGACGACAAAGAGTTGCA
ACACCTTGGGGGCGTGCTCCGACAATTGCGGGAGGCGAGGGCAGCCGAAA
GCCGGGAGGTAGCGTCCCTTTGGAACGAGGAAAAGTTTGCCGCCAGTCAG
AGGTAATAGCATGTTGTATGTTGTATTCACAATGTGACTGCACCATATAC
AGTAGTTCACTCGCCGTTCATCAATGGATCGTTGTGTGCTTCGCCGCGTC
TCAGTTGTGTCTTATAATAAGTCAAGGGAGCGATTTCTCGCTTTTGTCCC
TGACTCCTTGAAAATCGACCTTTCATCCACTGCATGCAACGTGAAGACGC
CCAATCTGAAGAGGCTGCTGCAAAACAACCGAGGGCTGTTGAAACGTAGA
CAGCGCCCGTAATTTTCTCCACTCATGTTTGTTCATTCTTTTGGCACAAC
CATGCGTGCGGTGTCAGGAGGCTGCAGCGGTATAGGATCCATGAATCCGT
TCTTCCAGACGATGTCGGTATACCACGAAATGCGCAGCGCAAAGCGCTTT
CGAAGGCGGGATGCCTCAACGTGCTCAAGTTATGAAAAGGACGCAAGGCG
CAAACTTTCGACGTGTTCGTAGCTCTTTAGAAGCTTTGCTGGTGTACGCC
AGCTCATGTACTAGAACAAACGTGGGTGTCATGCAAGATAATTATGCAGT
TCACACCTTAAAGACTTTTGATCCCGTCTTGGCGCGCAGGGAAGTAGAGC
AAGTTCTGTGGCAATTCCTCCCAGATGAAGCAAAGCAGGTAGCCGAGAAG
CGGGCGGAAGAGGATGCACCGGGTAATCACCGCCAAAGCAGGACT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig121:52924..55668+

>mRNA_H-canaliculatus_F_contig121.1823.1 ID=mRNA_H-canaliculatus_F_contig121.1823.1|Name=mRNA_H-canaliculatus_F_contig121.1823.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1350bp|location=Sequence derived from alignment at H-canaliculatus_F_contig121:52924..55668+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCCCAGGAAGATCGTGCATCGATTGCCGAGGCTAAAGAGACGGGGGA
TCGTTATCAGGCCCCGCTCCGACTCATGACCCAGTTCTTACGAGCAGTGT
CCGAGAGCCGGATGGAGAATGCCCTGGCCCTCGCGCAAACAAATGCCCCA
GGAAGATCGTGCATCGATTGCCGAGGCTAAAGAGACGGGGGATCGTTATC
AGGCCCCGCTCCGACTCATGACCCAGTTCTTACGAGCAGTGTCCGAGAGC
CGGATGGAGAATGCCCTGGCCCTCGCGCAAACAATCTTGAAGTTCGAGCC
ACAAAACGGAATCATTTTGGACTACCAGGCTACGTTGGCGCAGTTCATCA
ACAACATCTTGAAGTTCGAGCCACAAAACGGAATCATTTTGGACTACCAG
GCTACGTTGGCGCAGTTCATCAACAACACACGCGAGCTGGGATCTGCTCG
CGGAGGAGACTCGGATGACAACGGTGACGATGAAACTAGCAGCAGCGAGG
GGTCCACCGCTGAGACTTCAGCGGGTCCTGGAGACGGCGAATCAGCACGC
GAGCTGGGATCTGCTCGCGGAGGAGACTCGGATGACAACGGTGACGATGA
AACTAGCAGCAGCGAGGGGTCCACCGCTGAGACTTCAGCGGGTCCTGGAG
ACGGCGAATCAGGTGTGTCAACCGAGGAAGCAAGCAGCGATGAGACACCA
GAAGACGACGGCGGGAGAGAGGCGATGGCAGGGGCTTTCAGCGAAGACGC
TCGCGGAGGGCTTACAGAGGTGTGTCAACCGAGGAAGCAAGCAGCGATGA
GACACCAGAAGACGACGGCGGGAGAGAGGCGATGGCAGGGGCTTTCAGCG
AAGACGCTCGCGGAGGGCTTACAGAGGCGGCTTTGAACGACGACAAAGAG
TTGCAACACCTTGGGGGCGTGCTCCGACAATTGCGGGAGGCGAGGGCAGC
CGAAAGCCGGGAGGTAGCGTCCCTTTGGAACGAGGAAAAGTTTGCCGCCA
GTCAGAGGCGGCTTTGAACGACGACAAAGAGTTGCAACACCTTGGGGGCG
TGCTCCGACAATTGCGGGAGGCGAGGGCAGCCGAAAGCCGGGAGGTAGCG
TCCCTTTGGAACGAGGAAAAGTTTGCCGCCAGTCAGAGGGAAGTAGAGCA
AGTTCTGTGGCAATTCCTCCCAGATGAAGCAAAGCAGGTAGCCGAGAAGC
GGGCGGAAGAGGATGCACCGGGTAATCACCGCCAAAGCAGGACTGGAAGT
AGAGCAAGTTCTGTGGCAATTCCTCCCAGATGAAGCAAAGCAGGTAGCCG
AGAAGCGGGCGGAAGAGGATGCACCGGGTAATCACCGCCAAAGCAGGACT
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