mRNA_H-canaliculatus_F_contig12099.1814.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12099.1814.1
Unique NamemRNA_H-canaliculatus_F_contig12099.1814.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12099.1814.1 vs. uniprot
Match: A0A6H5KIY4_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY4_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 2.520e-33
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 1 
Query:  169 KPRDDSVRPRVVGPLGRPHRVVVVGAGFAGLGAALELQKLGIEVVVVEARQRVGGRCYTKRWISSGVKPPERP 387
            KPRDDS++P VV  LGRPHRVVVVGAGFAGLGAALELQKLGIEV+VVEAR+RVGGRCYTKRWISSGVKPPERP
Sbjct:  512 KPRDDSIKPIVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARRRVGGRCYTKRWISSGVKPPERP 584
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BLAST of mRNA_H-canaliculatus_F_contig12099.1814.1 vs. uniprot
Match: D8LQQ1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ1_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 3.150e-15
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:  253 AGLGAALELQKLGIEVVVVEARQRVGGRCYTKRWISSGVKPPER 384
            +GLG ALELQKLGIEV+V EARQRVGGRCYTKRWISSGVKPPER
Sbjct:  454 SGLGGALELQKLGIEVIVGEARQRVGGRCYTKRWISSGVKPPER 497
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BLAST of mRNA_H-canaliculatus_F_contig12099.1814.1 vs. uniprot
Match: A0A388KYR8_CHABU (SWIRM domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KYR8_CHABU)

HSP 1 Score: 65.9 bits (159), Expect = 8.370e-9
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:  184 SVRPRVVGPLGRPHRVVVVGAGFAGLGAALELQKLGIEVVVVEARQRVGGRCYTKRWISSG 366
            ++  R V PLG    VVV+GAG AGL AA +L   G++VVVVEARQR GGR YTKR   SG
Sbjct:  667 ALNQRPVPPLGIKKSVVVLGAGLAGLAAARQLLSFGLQVVVVEARQRPGGRVYTKRVEGSG 727
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BLAST of mRNA_H-canaliculatus_F_contig12099.1814.1 vs. uniprot
Match: UPI0016899B31 (FAD-dependent oxidoreductase n=2 Tax=Phormidium sp. FACHB-1136 TaxID=2692848 RepID=UPI0016899B31)

HSP 1 Score: 64.7 bits (156), Expect = 1.580e-8
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:  205 GPLGRPHRVVVVGAGFAGLGAALELQKLGIEVVVVEARQRVGGRCYT 345
            G +  P RV+VVGAG AGL AA ELQ+LG EVVVVEAR R+GGR +T
Sbjct:   30 GTVSNPKRVIVVGAGLAGLAAAQELQRLGHEVVVVEARDRIGGRVWT 76
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BLAST of mRNA_H-canaliculatus_F_contig12099.1814.1 vs. uniprot
Match: UPI0003602C02 (flavin monoamine oxidase family protein n=1 Tax=Longispora albida TaxID=203523 RepID=UPI0003602C02)

HSP 1 Score: 63.9 bits (154), Expect = 3.030e-8
Identity = 37/70 (52.86%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:  172 PRDDSVRPRVVGPLGR----PHRVVVVGAGFAGLGAALELQKLGIEVVVVEARQRVGGRCYTKRWISSGV 369
            P  DS+   V   LGR    P RV+V+GAG AGL AA ELQ+ G E VV+EA+ RVGGR YT R  + G+
Sbjct:   29 PVPDSILDVVTAGLGRREQHPKRVIVIGAGMAGLVAAFELQRQGHEPVVLEAQNRVGGRVYTMRDFAPGL 98
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BLAST of mRNA_H-canaliculatus_F_contig12099.1814.1 vs. uniprot
Match: A0A2S9F344_9MYCO (Monooxygenase (Fragment) n=1 Tax=Mycobacterium sp. ITM-2017-0098 TaxID=2099692 RepID=A0A2S9F344_9MYCO)

HSP 1 Score: 58.2 bits (139), Expect = 3.880e-8
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:  229 VVVVGAGFAGLGAALELQKLGIEVVVVEARQRVGGRCYT 345
            VVVVGAGFAGL AA EL +LG +VVV+E R RVGGR YT
Sbjct:    4 VVVVGAGFAGLSAARELSRLGRDVVVLEGRDRVGGRSYT 42
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BLAST of mRNA_H-canaliculatus_F_contig12099.1814.1 vs. uniprot
Match: A0A7S2SPD9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPD9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 4.700e-8
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:  217 RPHRVVVVGAGFAGLGAALELQKLGIEVVVVEARQRVGGRCYTK 348
            R  RVVV+GAG AGL AA EL+KLG EV+V+EAR R+GGRC+++
Sbjct:  131 RLFRVVVIGAGMAGLAAARELEKLGFEVIVLEARHRIGGRCHSE 174
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BLAST of mRNA_H-canaliculatus_F_contig12099.1814.1 vs. uniprot
Match: A0A7X4BVU0_9BACT (FAD-dependent oxidoreductase n=3 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4BVU0_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 6.550e-8
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:  172 PRDDSVRPRVVGPLGRPHRVVVVGAGFAGLGAALELQKLGIEVVVVEARQRVGGRCYTKR 351
            P +    P  +   GRP R+VVVGAG AGL AA EL + G EV V+EAR+RVGGR  T R
Sbjct:   32 PVEPEDSPGALAATGRPMRIVVVGAGMAGLAAAYELSRAGHEVTVLEARERVGGRVLTLR 91
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BLAST of mRNA_H-canaliculatus_F_contig12099.1814.1 vs. uniprot
Match: A0A7S0HIX9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HIX9_9CRYP)

HSP 1 Score: 61.2 bits (147), Expect = 1.190e-7
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:  184 SVRPRVVGPLGRPHR--VVVVGAGFAGLGAALELQKLGIEVVVVEARQRVGGRCYTKRWISSGV 369
             +RP    P  R  +  V+V+GAGFAGL AA EL  LG +VVVVEAR R+GGRC+T + +   +
Sbjct:  123 EIRPVAPDPANRKTQPSVLVIGAGFAGLSAADELHALGCKVVVVEARDRIGGRCWTDKSLDGRI 186
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BLAST of mRNA_H-canaliculatus_F_contig12099.1814.1 vs. uniprot
Match: A0A3M2BNE9_9BACT (FAD-binding protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3M2BNE9_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 1.280e-7
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  217 RPHRVVVVGAGFAGLGAALELQKLGIEVVVVEARQRVGGRCYTKRWISSGV 369
            R  RVVV+GAG AGLGAA ELQ+ G  V+V+EAR R+GGR +T R + + V
Sbjct:   25 RAERVVVIGAGAAGLGAAAELQRAGYSVLVIEARDRLGGRIFTDRSLGAPV 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12099.1814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIY4_9PHAE2.520e-3390.41PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D8LQQ1_ECTSI3.150e-1590.91PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A388KYR8_CHABU8.370e-959.02SWIRM domain-containing protein n=1 Tax=Chara brau... [more]
UPI0016899B311.580e-868.09FAD-dependent oxidoreductase n=2 Tax=Phormidium sp... [more]
UPI0003602C023.030e-852.86flavin monoamine oxidase family protein n=1 Tax=Lo... [more]
A0A2S9F344_9MYCO3.880e-874.36Monooxygenase (Fragment) n=1 Tax=Mycobacterium sp.... [more]
A0A7S2SPD9_9STRA4.700e-865.91Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7X4BVU0_9BACT6.550e-855.00FAD-dependent oxidoreductase n=3 Tax=Gemmatimonade... [more]
A0A7S0HIX9_9CRYP1.190e-750.00Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A3M2BNE9_9BACT1.280e-758.82FAD-binding protein n=1 Tax=Acidobacteria bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12099contigH-canaliculatus_F_contig12099:1613..2879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue2e-14
Seed eggNOG ortholog2880.D8LQQ1
KEGG koko:K11450
KEGG Pathwayko04714,map04714
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006464,GO:0006476,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008213,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0016575,GO:0018022,GO:0018193,GO:0018205,GO:0019538,GO:0022622,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0035601,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048364,GO:0048731,GO:0048856,GO:0051276,GO:0051568,GO:0071704,GO:0071840,GO:0098732,GO:0099402,GO:1901564
EggNOG free text desc.SET domain
EggNOG OGsCOG1231@1,COG2940@1,KOG0029@2759,KOG1084@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_000880.1
Exons2
Model size681
Cds size681
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928921.7973225-CDS-H-canaliculatus_F_contig12099:1612..19811622928921.7973225-CDS-H-canaliculatus_F_contig12099:1612..1981Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12099 1613..1981 -
1696845613.1386046-CDS-H-canaliculatus_F_contig12099:1612..19811696845613.1386046-CDS-H-canaliculatus_F_contig12099:1612..1981Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12099 1613..1981 -
1622928921.8123243-CDS-H-canaliculatus_F_contig12099:2567..28791622928921.8123243-CDS-H-canaliculatus_F_contig12099:2567..2879Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12099 2568..2879 -
1696845613.1546-CDS-H-canaliculatus_F_contig12099:2567..28791696845613.1546-CDS-H-canaliculatus_F_contig12099:2567..2879Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12099 2568..2879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12099.1814.1prot_H-canaliculatus_F_contig12099.1814.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12099 1613..2879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12099.1814.1

>prot_H-canaliculatus_F_contig12099.1814.1 ID=prot_H-canaliculatus_F_contig12099.1814.1|Name=mRNA_H-canaliculatus_F_contig12099.1814.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=227bp
QRQKEQEQQRQARKDRKRREEEAAGAKKRRRVGGDAAAAAAAAAAAAAAA
AAAGKRKPRDDSVRPRVVGPLGRPHRVVVVGAGFAGLGAALELQKLGIEV
VVVEARQRVGGRCYTKRWISSGVKPPERPPPPPPPSGKTPRAARREAAAA
AVAAGAAGPEAVAGAGAAAAAGEGREAVASAAGAGASSAATSAAAAATAA
AGAAASSSSRAPAPCAASATGSSASAP
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mRNA from alignment at H-canaliculatus_F_contig12099:1613..2879-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12099.1814.1 ID=mRNA_H-canaliculatus_F_contig12099.1814.1|Name=mRNA_H-canaliculatus_F_contig12099.1814.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1267bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12099:1613..2879- (Hapterophycus canaliculatus Oshoro5f female)
CAGCGACAGAAGGAACAGGAGCAGCAGAGGCAGGCGAGGAAGGACAGGAA
GAGGCGGGAGGAGGAGGCCGCCGGCGCCAAGAAGAGGAGGAGGGTCGGGG
GCGACGCGGCGGCGGCGGCGGCGGCGGCCGCGGCGGCGGCGGCGGCAGCG
GCGGCGGCGGGGAAAAGGAAGCCGCGAGACGACTCCGTCAGGCCTAGGGT
GGTGGGCCCGTTGGGGCGCCCCCACCGGGTCGTGGTGGTCGGCGCCGGCT
TCGCCGGGCTCGGAGCCGCGCTGGAGCTGCAGAAGCTTGGGATCGAGGTG
GTCGTGGTGGAGGTGAGCGTCCCAAGAGCGGGGTCTCGTGTAAGGAGCTC
GTGTGTAACCGAGGGTAGTGTTGTTGTGGTTTGGTTCGCGTGCCTTCTTT
TTTTTTTCGGGGGGGCGGGGGGCGGGGCATGGGGTAGATCTCGGGCAGGA
CAAACCATCCCGCCGCGTGCTGCCTTTTGCTTAGGGCGATGCGACCGCGG
TTCCGCTCGAGGACCGCCCGCCCGGGGCCCTTTGCGCCCACAGGGCTCCG
AACACGAGGCGCATGCGCGGGCCGGTAGGCCCTCGGGGCGGTGAGGCGCC
TAGACCAAGCAAGCAGTGAGCGGGTTGTGGGCGGGCGTATTGCTGACGGT
TCGCTTTCAAGGCGGGGTGCGCCGTAGGGACTCTCGAAAGAGACGAGGCG
ATCGGCCAGGGCGTTCGCATCGGAGCGAGCGGACCAGAAACGGCGACGAC
ACCCGGTCCTCAGCACCACGGTGCAGCAGCCCCCCGATGCACGGCGACCA
AAGAACCAGAACGCTCCCCTTCCACGAACCCTCCTCCTCGCACTGATCCC
CCCCCCCCCTTGCGCCCCCTCCCCCTCCCCACGCGGGGTTCGGAACAGGC
GAGGCAGAGGGTCGGCGGCCGTTGCTACACGAAGCGCTGGATCTCGAGCG
GGGTGAAGCCTCCCGAGCGACCGCCGCCCCCGCCGCCCCCTTCCGGGAAG
ACTCCACGGGCGGCGCGGCGGGAGGCTGCGGCTGCGGCTGTCGCCGCCGG
TGCGGCCGGGCCCGAGGCGGTCGCCGGGGCTGGCGCTGCGGCCGCGGCGG
GAGAGGGGCGGGAAGCGGTGGCCTCTGCGGCTGGTGCTGGTGCCAGTTCT
GCCGCAACTTCTGCTGCTGCCGCCGCAACTGCTGCCGCTGGTGCCGCTGC
TTCTTCCTCTTCTCGTGCACCTGCCCCTTGTGCGGCCTCGGCGACCGGCT
CTTCAGCCTCCGCCCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12099:1613..2879-

>mRNA_H-canaliculatus_F_contig12099.1814.1 ID=mRNA_H-canaliculatus_F_contig12099.1814.1|Name=mRNA_H-canaliculatus_F_contig12099.1814.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1362bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12099:1613..2879- (Hapterophycus canaliculatus Oshoro5f female)
CAGCGACAGAAGGAACAGGAGCAGCAGAGGCAGGCGAGGAAGGACAGGAA
GAGGCGGGAGGAGGAGGCCGCCGGCGCCAAGAAGAGGAGGAGGGTCGGGG
GCGACGCGGCGGCGGCGGCGGCGGCGGCCGCGGCGGCGGCGGCGGCAGCG
GCGGCGGCGGGGAAAAGGAAGCCGCGAGACGACTCCGTCAGGCCTAGGGT
GGTGGGCCCGTTGGGGCGCCCCCACCGGGTCGTGGTGGTCGGCGCCGGCT
TCGCCGGGCTCGGAGCCGCGCTGGAGCTGCAGAAGCTTGGGATCGAGGTG
GTCGTGGTGGAGCAGCGACAGAAGGAACAGGAGCAGCAGAGGCAGGCGAG
GAAGGACAGGAAGAGGCGGGAGGAGGAGGCCGCCGGCGCCAAGAAGAGGA
GGAGGGTCGGGGGCGACGCGGCGGCGGCGGCGGCGGCGGCCGCGGCGGCG
GCGGCGGCAGCGGCGGCGGCGGGGAAAAGGAAGCCGCGAGACGACTCCGT
CAGGCCTAGGGTGGTGGGCCCGTTGGGGCGCCCCCACCGGGTCGTGGTGG
TCGGCGCCGGCTTCGCCGGGCTCGGAGCCGCGCTGGAGCTGCAGAAGCTT
GGGATCGAGGTGGTCGTGGTGGAGGCGAGGCAGAGGGTCGGCGGCCGTTG
CTACACGAAGCGCTGGATCTCGAGCGGGGTGAAGCCTCCCGAGCGACCGC
CGCCCCCGCCGCCCCCTTCCGGGAAGACTCCACGGGCGGCGCGGCGGGAG
GCTGCGGCTGCGGCTGTCGCCGCCGGTGCGGCCGGGCCCGAGGCGGTCGC
CGGGGCTGGCGCTGCGGCCGCGGCGGGAGAGGGGCGGGAAGCGGTGGCCT
CTGCGGCTGGTGCTGGTGCCAGTTCTGCCGCAACTTCTGCTGCTGCCGCC
GCAACTGCTGCCGCTGGTGCCGCTGCTTCTTCCTCTTCTCGTGCACCTGC
CCCTTGTGCGGCCTCGGCGACCGGCTCTTCAGCCTCCGCCCCCGCGAGGC
AGAGGGTCGGCGGCCGTTGCTACACGAAGCGCTGGATCTCGAGCGGGGTG
AAGCCTCCCGAGCGACCGCCGCCCCCGCCGCCCCCTTCCGGGAAGACTCC
ACGGGCGGCGCGGCGGGAGGCTGCGGCTGCGGCTGTCGCCGCCGGTGCGG
CCGGGCCCGAGGCGGTCGCCGGGGCTGGCGCTGCGGCCGCGGCGGGAGAG
GGGCGGGAAGCGGTGGCCTCTGCGGCTGGTGCTGGTGCCAGTTCTGCCGC
AACTTCTGCTGCTGCCGCCGCAACTGCTGCCGCTGGTGCCGCTGCTTCTT
CCTCTTCTCGTGCACCTGCCCCTTGTGCGGCCTCGGCGACCGGCTCTTCA
GCCTCCGCCCCC
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