mRNA_H-canaliculatus_F_contig12097.1812.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12097.1812.1
Unique NamemRNA_H-canaliculatus_F_contig12097.1812.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12097.1812.1 vs. uniprot
Match: A0A6H5KWA2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWA2_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.680e-16
Identity = 45/142 (31.69%), Postives = 81/142 (57.04%), Query Frame = 1 
Query:   40 LLHEHPERVVQDHARAYSLISSSVAGTDLDERLQSCSTEAEAWRVLHEWVLPSTLAQKHLLKEQFNSVPFPVGGHPNAFSAKLDRLGNM*LRAVGVEVTEGEMVQAMIDQLPDEYAIQKAILREKTDVSRREVEEMLGNAYA 465
            L  ++  ++V +H R +S I  +  G  L+ ++ SC + AEAWR++ +W LPS  A   LL  + ++V      +P  F +++ +L    LRAV +  +E E+VQ ++ QLP  Y ++K     K D++R E+++++   YA
Sbjct:  149 LTRQYGAQLVVEHKRTWSFILEAAVGGPLENKMYSCHSVAEAWRMMADWFLPSHPADCQLLVAELDTVTMNNDENPKLFCSRVAQLETK-LRAVVIAKSEQEVVQILVRQLPARYDVEKRTSLPKRDLTRAELQDVVRGRYA 289
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12097.1812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWA2_9PHAE2.680e-1631.69Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12097contigH-canaliculatus_F_contig12097:155..622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size469
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928921.7141914-CDS-H-canaliculatus_F_contig12097:154..4631622928921.7141914-CDS-H-canaliculatus_F_contig12097:154..463Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12097 155..463 +
1696845613.1199622-CDS-H-canaliculatus_F_contig12097:154..4631696845613.1199622-CDS-H-canaliculatus_F_contig12097:154..463Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12097 155..463 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928921.7421129-UTR-H-canaliculatus_F_contig12097:463..6221622928921.7421129-UTR-H-canaliculatus_F_contig12097:463..622Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12097 464..622 +
1696845613.1285079-UTR-H-canaliculatus_F_contig12097:463..6221696845613.1285079-UTR-H-canaliculatus_F_contig12097:463..622Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12097 464..622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12097.1812.1prot_H-canaliculatus_F_contig12097.1812.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12097 155..463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12097.1812.1

>prot_H-canaliculatus_F_contig12097.1812.1 ID=prot_H-canaliculatus_F_contig12097.1812.1|Name=mRNA_H-canaliculatus_F_contig12097.1812.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=103bp
IGPVRVISSSRDTLLHEHPERVVQDHARAYSLISSSVAGTDLDERLQSCS
TEAEAWRVLHEWVLPSTLAQKHLLKEQFNSVPFPVGGHPNAFSAKLDRLG
NM*
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mRNA from alignment at H-canaliculatus_F_contig12097:155..622+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12097.1812.1 ID=mRNA_H-canaliculatus_F_contig12097.1812.1|Name=mRNA_H-canaliculatus_F_contig12097.1812.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=468bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12097:155..622+ (Hapterophycus canaliculatus Oshoro5f female)
ATCGGTCCTGTGCGTGTTATCAGCTCTAGCCGCGACACCCTTCTCCACGA
GCACCCGGAGAGAGTTGTGCAAGATCATGCACGAGCGTACAGCCTTATTT
CCAGCTCGGTTGCCGGGACGGATCTTGATGAAAGGCTTCAGTCGTGTTCA
ACAGAGGCGGAAGCATGGCGAGTTTTACACGAGTGGGTATTGCCGTCTAC
CCTTGCCCAGAAGCATCTCCTCAAGGAACAGTTCAACAGTGTACCGTTCC
CTGTGGGTGGTCACCCCAACGCGTTCTCGGCAAAACTCGATAGACTCGGC
AACATGTAGTTGAGGGCTGTCGGTGTCGAGGTGACTGAAGGGGAGATGGT
TCAAGCCATGATCGACCAGTTGCCAGATGAGTATGCTATTCAGAAAGCCA
TACTTCGCGAAAAAACAGATGTTTCACGGCGGGAAGTGGAGGAGATGCTT
GGGAACGCCTATGCGGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12097:155..622+

>mRNA_H-canaliculatus_F_contig12097.1812.1 ID=mRNA_H-canaliculatus_F_contig12097.1812.1|Name=mRNA_H-canaliculatus_F_contig12097.1812.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=618bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12097:155..622+ (Hapterophycus canaliculatus Oshoro5f female)
ATCGGTCCTGTGCGTGTTATCAGCTCTAGCCGCGACACCCTTCTCCACGA
GCACCCGGAGAGAGTTGTGCAAGATCATGCACGAGCGTACAGCCTTATTT
CCAGCTCGGTTGCCGGGACGGATCTTGATGAAAGGCTTCAGTCGTGTTCA
ACAGAGGCGGAAGCATGGCGAGTTTTACACGAGTGGGTATTGCCGTCTAC
CCTTGCCCAGAAGCATCTCCTCAAGGAACAGTTCAACAGTGTACCGTTCC
CTGTGGGTGGTCACCCCAACGCGTTCTCGGCAAAACTCGATAGACTCGGC
AACATGTAGATCGGTCCTGTGCGTGTTATCAGCTCTAGCCGCGACACCCT
TCTCCACGAGCACCCGGAGAGAGTTGTGCAAGATCATGCACGAGCGTACA
GCCTTATTTCCAGCTCGGTTGCCGGGACGGATCTTGATGAAAGGCTTCAG
TCGTGTTCAACAGAGGCGGAAGCATGGCGAGTTTTACACGAGTGGGTATT
GCCGTCTACCCTTGCCCAGAAGCATCTCCTCAAGGAACAGTTCAACAGTG
TACCGTTCCCTGTGGGTGGTCACCCCAACGCGTTCTCGGCAAAACTCGAT
AGACTCGGCAACATGTAG
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