mRNA_H-canaliculatus_F_contig12093.1811.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12093.1811.1
Unique NamemRNA_H-canaliculatus_F_contig12093.1811.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12093.1811.1 vs. uniprot
Match: D7FN88_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN88_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 9.690e-46
Identity = 83/94 (88.30%), Postives = 87/94 (92.55%), Query Frame = 1
Query:    1 FSRWTYLSSFFGIVDIASIAPWYIEVALSSSGVYFDASAFRVLRLFRILQLEHFVSAFSLLDDVWTQSRDTLAATGLLALVVWVGSACLFYLFE 282
            FSRW YLSSFFG+VD+ASIAPWYIE  L S+GVYFDAS FRVLRLFRILQLEHFVSAFSLLDDVWT S+DTLAATGLLALVVWVGSA LFYLFE
Sbjct: 1014 FSRWKYLSSFFGVVDVASIAPWYIETILWSAGVYFDASVFRVLRLFRILQLEHFVSAFSLLDDVWTASKDTLAATGLLALVVWVGSAFLFYLFE 1107          
BLAST of mRNA_H-canaliculatus_F_contig12093.1811.1 vs. uniprot
Match: A0A836CDK7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK7_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.780e-29
Identity = 59/89 (66.29%), Postives = 71/89 (79.78%), Query Frame = 1
Query:   16 YLSSFFGIVDIASIAPWYIEVALSSSGVYFDASAFRVLRLFRILQLEHFVSAFSLLDDVWTQSRDTLAATGLLALVVWVGSACLFYLFE 282
            YL+SFFGIVD+ASI PWYI+  L S+GV FDA  FR+LRLFR+LQLE  V+AF+LLDDVW  ++  L A GLLA +VWVGSA LF+L E
Sbjct: 1027 YLTSFFGIVDMASILPWYIQEILVSAGVVFDAGPFRILRLFRLLQLERHVNAFTLLDDVWRGAKGVLKAAGLLAFIVWVGSATLFFLTE 1115          
BLAST of mRNA_H-canaliculatus_F_contig12093.1811.1 vs. uniprot
Match: A0A812I8R1_9DINO (Kcnd2 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812I8R1_9DINO)

HSP 1 Score: 105 bits (261), Expect = 2.740e-24
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 FSRWTYLSSFFGIVDIASIAPWYIEVALSSSGVYFDASAFRVLRLFRILQLEHFVSAFSLLDDVWTQSRDTLAATGLLALVVWVGSACLFYLFE 282
            F R  Y+ SFFG+VD+ ++AP++I+ A+  SG+ F+A  FR+ RL RILQLE FV +F+LLDD W   R+T+ ATG +AL+VW+  A LFY FE
Sbjct:  955 FCRRNYIFSFFGLVDLVTVAPFWIQTAMWLSGLQFNAFIFRIARLLRILQLEDFVESFTLLDDAWRACRETMVATGFMALLVWICGAVLFYEFE 1048          
BLAST of mRNA_H-canaliculatus_F_contig12093.1811.1 vs. uniprot
Match: A0A812KXJ3_9DINO (Shal protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812KXJ3_9DINO)

HSP 1 Score: 105 bits (261), Expect = 2.780e-24
Identity = 50/94 (53.19%), Postives = 68/94 (72.34%), Query Frame = 1
Query:    1 FSRWTYLSSFFGIVDIASIAPWYIEVALSSSGVYFDASAFRVLRLFRILQLEHFVSAFSLLDDVWTQSRDTLAATGLLALVVWVGSACLFYLFE 282
            F R  Y+ SFFGIVD+ ++AP++I+  +  SG+ F+A  FR+ RL RILQLE FV +F+LLDD W   R+T+ ATG +AL+VW+  A LFY FE
Sbjct: 1202 FCRRNYVCSFFGIVDLVTVAPFWIQTVMWLSGLQFNAFVFRIARLLRILQLEDFVESFTLLDDAWRSCRETMVATGFMALLVWICGAVLFYEFE 1295          
BLAST of mRNA_H-canaliculatus_F_contig12093.1811.1 vs. uniprot
Match: A0A812X110_9DINO (Shal protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812X110_9DINO)

HSP 1 Score: 105 bits (261), Expect = 2.800e-24
Identity = 50/94 (53.19%), Postives = 68/94 (72.34%), Query Frame = 1
Query:    1 FSRWTYLSSFFGIVDIASIAPWYIEVALSSSGVYFDASAFRVLRLFRILQLEHFVSAFSLLDDVWTQSRDTLAATGLLALVVWVGSACLFYLFE 282
            F R  Y+ SFFGIVD+ ++AP++I+  +  SG+ F+A  FR+ RL RILQLE FV +F+LLDD W   R+T+ ATG +AL+VW+  A LFY FE
Sbjct: 1681 FCRRNYVCSFFGIVDLVTVAPFWIQTVMWLSGLQFNAFVFRIARLLRILQLEDFVESFTLLDDAWRSCRETMVATGFMALLVWICGAVLFYEFE 1774          
BLAST of mRNA_H-canaliculatus_F_contig12093.1811.1 vs. uniprot
Match: A0A812SGN0_SYMPI (Kcnd2 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812SGN0_SYMPI)

HSP 1 Score: 103 bits (258), Expect = 6.780e-24
Identity = 49/94 (52.13%), Postives = 68/94 (72.34%), Query Frame = 1
Query:    1 FSRWTYLSSFFGIVDIASIAPWYIEVALSSSGVYFDASAFRVLRLFRILQLEHFVSAFSLLDDVWTQSRDTLAATGLLALVVWVGSACLFYLFE 282
            F R  Y+ SFFG+VD+ ++AP++I+  +  SG+ F+A  FR+ RL RILQLE FV +F+LLDD W   R+T+ ATG +AL+VW+  A LFY FE
Sbjct:  292 FCRRNYIVSFFGLVDLVTVAPFWIQTVMWISGLQFNAFIFRIARLLRILQLEDFVESFTLLDDAWRSCRETMVATGFMALLVWICGAVLFYEFE 385          
BLAST of mRNA_H-canaliculatus_F_contig12093.1811.1 vs. uniprot
Match: A0A7S0XQ15_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XQ15_HEMAN)

HSP 1 Score: 96.7 bits (239), Expect = 5.990e-23
Identity = 48/89 (53.93%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   16 YLSSFFGIVDIASIAPWYIEVALSSSGVYFDASAFRVLRLFRILQLEHFVSAFSLLDDVWTQSRDTLAATGLLALVVWVGSACLFYLFE 282
            YL+SFFG  D  ++ P+YIE      G   D +A RVLRLFRILQLEHF  AF+L+DDV+ Q +DTL AT  LA+++WVG+A  F++ E
Sbjct:   36 YLTSFFGTADFVALLPYYIERGALMYGRPADFAAIRVLRLFRILQLEHFTEAFTLIDDVFRQCKDTLVATSFLAVIIWVGAAYAFFVTE 124          
BLAST of mRNA_H-canaliculatus_F_contig12093.1811.1 vs. uniprot
Match: R1ESQ2_EMIHU (Ion_trans domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ESQ2_EMIHU)

HSP 1 Score: 95.1 bits (235), Expect = 7.470e-23
Identity = 49/93 (52.69%), Postives = 67/93 (72.04%), Query Frame = 1
Query:   16 YLSSFFGIVDIASIAPWYIE---VALSSSGVYFDASA-FRVLRLFRILQLEHFVSAFSLLDDVWTQSRDTLAATGLLALVVWVGSACLFYLFE 282
            Y ++FFGIVD+ S  PWY++   +AL  +G   DA+A FR+ R   +LQLE F++AF+LLD+V   S D L ATGL+AL++WVG A LF+LFE
Sbjct:   52 YATTFFGIVDLLSFLPWYVQQASLALGLAGSSSDAAAVFRIFRXXXVLQLERFLTAFTLLDNVLRASADVLVATGLMALIIWVGGAALFFLFE 144          
BLAST of mRNA_H-canaliculatus_F_contig12093.1811.1 vs. uniprot
Match: A0A7S4ESS3_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ESS3_CHRCT)

HSP 1 Score: 97.4 bits (241), Expect = 7.300e-22
Identity = 48/98 (48.98%), Postives = 72/98 (73.47%), Query Frame = 1
Query:    1 FSRWTYLSSFFGIVDIASIAPWYIEVALSSSGVYFD----ASAFRVLRLFRILQLEHFVSAFSLLDDVWTQSRDTLAATGLLALVVWVGSACLFYLFE 282
            +SR  Y ++FFGIVD+ +IAPWY++  L ++G        A+ FR++R+ RIL LE FV+AF++LD+V+  S++ LAATGL+A ++WVGSA   +LFE
Sbjct:  265 YSRLFYATTFFGIVDLVAIAPWYVQQVLEATGYLSTDSDVATVFRIVRVVRILSLERFVTAFTVLDNVFRASQEMLAATGLMAALIWVGSATCLFLFE 362          
BLAST of mRNA_H-canaliculatus_F_contig12093.1811.1 vs. uniprot
Match: K0S063_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S063_THAOC)

HSP 1 Score: 98.2 bits (243), Expect = 7.430e-22
Identity = 50/96 (52.08%), Postives = 65/96 (67.71%), Query Frame = 1
Query:    1 FSRWTYLSSFFGIVDIASIAPWYIEVALSSSGVYF--DASAFRVLRLFRILQLEHFVSAFSLLDDVWTQSRDTLAATGLLALVVWVGSACLFYLFE 282
            +S W Y  +FFGIVD+ SI PWYIE  L+SSG     +A  FR       LQLE FV AFS LD+V+  S+  L ATGL+AL++W+GS+ LF++FE
Sbjct:  995 YSPWVYSQTFFGIVDLLSILPWYIEAVLASSGKLSGDEARVFRXXXXXXXLQLEDFVVAFSRLDNVYRASKGVLKATGLMALIIWIGSSALFFIFE 1090          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12093.1811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN88_ECTSI9.690e-4688.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDK7_9STRA2.780e-2966.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A812I8R1_9DINO2.740e-2453.19Kcnd2 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A812KXJ3_9DINO2.780e-2453.19Shal protein n=2 Tax=Symbiodinium TaxID=2949 RepID... [more]
A0A812X110_9DINO2.800e-2453.19Shal protein n=1 Tax=Symbiodinium necroappetens Ta... [more]
A0A812SGN0_SYMPI6.780e-2452.13Kcnd2 protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]
A0A7S0XQ15_HEMAN5.990e-2353.93Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
R1ESQ2_EMIHU7.470e-2352.69Ion_trans domain-containing protein n=1 Tax=Emilia... [more]
A0A7S4ESS3_CHRCT7.300e-2248.98Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
K0S063_THAOC7.430e-2252.08Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12093contigH-canaliculatus_F_contig12093:1444..2646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue1.9e-38
Seed eggNOG ortholog2880.D7FN88
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsCOG2126@1,KOG1419@2759,KOG3713@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionIQ motif, EF-hand binding site
Ec32 orthologEc-15_003380.1
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928921.6373398-CDS-H-canaliculatus_F_contig12093:1443..16601622928921.6373398-CDS-H-canaliculatus_F_contig12093:1443..1660Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12093 1444..1660 -
1696845613.1020772-CDS-H-canaliculatus_F_contig12093:1443..16601696845613.1020772-CDS-H-canaliculatus_F_contig12093:1443..1660Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12093 1444..1660 -
1622928921.6548324-CDS-H-canaliculatus_F_contig12093:2581..26461622928921.6548324-CDS-H-canaliculatus_F_contig12093:2581..2646Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12093 2582..2646 -
1696845613.1116679-CDS-H-canaliculatus_F_contig12093:2581..26461696845613.1116679-CDS-H-canaliculatus_F_contig12093:2581..2646Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12093 2582..2646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12093.1811.1prot_H-canaliculatus_F_contig12093.1811.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12093 1444..2646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12093.1811.1

>prot_H-canaliculatus_F_contig12093.1811.1 ID=prot_H-canaliculatus_F_contig12093.1811.1|Name=mRNA_H-canaliculatus_F_contig12093.1811.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=94bp
FSRWTYLSSFFGIVDIASIAPWYIEVALSSSGVYFDASAFRVLRLFRILQ
LEHFVSAFSLLDDVWTQSRDTLAATGLLALVVWVGSACLFYLFE
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mRNA from alignment at H-canaliculatus_F_contig12093:1444..2646-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12093.1811.1 ID=mRNA_H-canaliculatus_F_contig12093.1811.1|Name=mRNA_H-canaliculatus_F_contig12093.1811.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1203bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12093:1444..2646- (Hapterophycus canaliculatus Oshoro5f female)
TTCAGCCGATGGACGTATCTGAGCTCCTTCTTTGGCATCGTCGACATCGC TTCCATCGCGCCATGGTGAGTTTGAATGTTTGGCCGAGGCCTTTCGTAGT AGATTCCTCGGAGAGCGTCCCGTTCGGGGGATATTGTCTGTGACGCCCCT GCCCCCCATCCCCCCTCGTTCAAGAATTTTCGTTTGAGCGCTGGGGGAAT CGCGTGGGTCGTCACATGTTGGTAAGGGTTGCTTGTCTCGGCGCTTGGCG TGCTTCTTTTCTTGTCAAAGAGAAGCGGCCGAATAGCGAACCTTTTCAAG GGGGAGTTGTGGGTGTCGCTCTCCATGCGGCCGTTTTCATTTCGTGCCCG GAGTGATGTGGTATGTTCGGTTTTCTCTGAGGCATCGGTACGACGCTTGA GATGCCTCGCCATGCCTCCTGACTGGTCGCTTTTCCGGGAGGATATCAAC GTTGCCCGTCAACCCCGACGGTGGTTCGTCCTTGGTGGTGCGCCCACATT TTTTTTGTCAGGGATTCCAATCCCTTACAAACTGCTGGTGGCGCTGGCGT TTTTTGCCTTCCACCTATGATTCTCCTCGCCCCCATGAAGTCGAAAGTGA AAGCCTGTACTTGGATAGCCCCTTCGTAGTTTGGCGAAAACGGCGTGCCG GCACCGCTCTCCACTGAATCTCACGTCGACGGCGTGATTCTGCTATCTCG TGTTGGTCCGCACTCGCGGTCTCATCGGTTCCTCAGATGTTACTTTGTCT CTGCTCTCACAAAAAAGGAGGCCTTCTAGGGCAGGCGCTGTAGAAGCTCG CGGTCAGCCTCGGCGCCTTGTTTCCCCCAGATATCAGAAATCGCTCCTAA AGTAACGTACCACGTTGTCGTCTGGTGCGAACTCAACACACCGTCGTGTG CTCTCGTCCTTGACCTTTCCCTCCTGCCCGTACGTCCACTCTCTTCGTCG GCATTTTCACCCCGCCCACGACGTTTTCGACGCAAGGTACATCGAGGTGG CCCTGAGCTCGTCCGGCGTCTACTTCGACGCGTCCGCGTTCAGGGTGCTT CGGCTGTTCCGCATCCTGCAGCTGGAGCACTTCGTGTCGGCCTTCTCCCT CCTCGACGACGTCTGGACGCAGTCCCGCGACACCCTGGCGGCGACGGGGC TCCTGGCCCTGGTGGTGTGGGTGGGCAGCGCCTGCCTCTTCTACCTTTTC GAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12093:1444..2646-

>mRNA_H-canaliculatus_F_contig12093.1811.1 ID=mRNA_H-canaliculatus_F_contig12093.1811.1|Name=mRNA_H-canaliculatus_F_contig12093.1811.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=564bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12093:1444..2646- (Hapterophycus canaliculatus Oshoro5f female)
TTCAGCCGATGGACGTATCTGAGCTCCTTCTTTGGCATCGTCGACATCGC
TTCCATCGCGCCATGTTCAGCCGATGGACGTATCTGAGCTCCTTCTTTGG
CATCGTCGACATCGCTTCCATCGCGCCATGGTACATCGAGGTGGCCCTGA
GCTCGTCCGGCGTCTACTTCGACGCGTCCGCGTTCAGGGTGCTTCGGCTG
TTCCGCATCCTGCAGCTGGAGCACTTCGTGTCGGCCTTCTCCCTCCTCGA
CGACGTCTGGACGCAGTCCCGCGACACCCTGGCGGCGACGGGGCTCCTGG
CCCTGGTGGTGTGGGTGGGCAGCGCCTGCCTCTTCTACCTTTTCGAGGTA
CATCGAGGTGGCCCTGAGCTCGTCCGGCGTCTACTTCGACGCGTCCGCGT
TCAGGGTGCTTCGGCTGTTCCGCATCCTGCAGCTGGAGCACTTCGTGTCG
GCCTTCTCCCTCCTCGACGACGTCTGGACGCAGTCCCGCGACACCCTGGC
GGCGACGGGGCTCCTGGCCCTGGTGGTGTGGGTGGGCAGCGCCTGCCTCT
TCTACCTTTTCGAG
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