mRNA_H-canaliculatus_F_contig12090.1809.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12090.1809.1
Unique NamemRNA_H-canaliculatus_F_contig12090.1809.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12090.1809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12090contigH-canaliculatus_F_contig12090:2092..2907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size816
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12090.1809.1prot_H-canaliculatus_F_contig12090.1809.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12090 2344..2853 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928920.9759786-UTR-H-canaliculatus_F_contig12090:2091..23431622928920.9759786-UTR-H-canaliculatus_F_contig12090:2091..2343Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12090 2092..2343 +
1696845613.0292385-UTR-H-canaliculatus_F_contig12090:2091..23431696845613.0292385-UTR-H-canaliculatus_F_contig12090:2091..2343Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12090 2092..2343 +
1622928921.449184-UTR-H-canaliculatus_F_contig12090:2853..29071622928921.449184-UTR-H-canaliculatus_F_contig12090:2853..2907Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12090 2854..2907 +
1696845613.0493233-UTR-H-canaliculatus_F_contig12090:2853..29071696845613.0493233-UTR-H-canaliculatus_F_contig12090:2853..2907Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12090 2854..2907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928921.4367158-CDS-H-canaliculatus_F_contig12090:2343..28531622928921.4367158-CDS-H-canaliculatus_F_contig12090:2343..2853Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12090 2344..2853 +
1696845613.038286-CDS-H-canaliculatus_F_contig12090:2343..28531696845613.038286-CDS-H-canaliculatus_F_contig12090:2343..2853Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12090 2344..2853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12090.1809.1

>prot_H-canaliculatus_F_contig12090.1809.1 ID=prot_H-canaliculatus_F_contig12090.1809.1|Name=mRNA_H-canaliculatus_F_contig12090.1809.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=170bp
MLPRPSLTHFLRMKSRNVRLVPPLASRQSFNMTVNLGCESIYSHGMVVRD
TKIKGKMAMKPCLETCIYPYLNLKRASSIQGINKHCPSSRTGLRNAENQD
KNHNATRLFAEQDHRSRSRARSTQQLVNCPVFIMCLDALGTFCEGARSAE
IYISSLKRYHTTPQSENIL*
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mRNA from alignment at H-canaliculatus_F_contig12090:2092..2907+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12090.1809.1 ID=mRNA_H-canaliculatus_F_contig12090.1809.1|Name=mRNA_H-canaliculatus_F_contig12090.1809.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=816bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12090:2092..2907+ (Hapterophycus canaliculatus Oshoro5f female)
CTCTTTCAGCCGGGCCGCCTTCAGCAGCACTGCCTCGGCATTCGCCTCGT
ACTGCATACCCCGTAGGATCGGAGTCGTGAAGTGCTCCTAGGTTTGAAAA
AGGCAGCGACACGCCGACACGCACAGGCGGCGGTGCAGATGGGCGGGCGA
TCGGGCGGGAAAAGGGGGGAGGTGATCAGGAATCATGCTTCCCTTTGAGT
GTCCCAGAGCATCACTTTGTGAGCCGCGTCACATGTGTATTTCGGCCCAT
CGATGCTCCCACGTCCGTCTCTTACGCATTTCTTGCGCATGAAGAGCAGG
AATGTGCGTCTTGTGCCGCCTTTAGCCTCCAGACAGAGCTTCAACATGAC
CGTGAATCTAGGCTGCGAAAGCATATACTCTCACGGGATGGTGGTGCGGG
ACACCAAAATCAAAGGAAAAATGGCAATGAAGCCTTGTCTCGAGACGTGT
ATATACCCGTATCTAAACCTGAAAAGGGCGTCGTCCATCCAGGGAATCAA
CAAGCACTGCCCTTCGTCACGCACAGGACTCCGCAACGCGGAAAACCAAG
ACAAAAACCACAACGCGACGAGACTTTTCGCGGAGCAAGACCACCGGTCT
CGATCACGCGCGCGATCCACACAACAACTCGTCAATTGTCCTGTTTTCAT
CATGTGCTTGGACGCACTCGGAACATTTTGCGAAGGAGCTCGGTCGGCCG
AGATTTACATTTCATCCCTCAAGCGTTACCACACCACCCCACAGAGCGAG
AATATCTTGTGAAAAACTCTGGCCCTCCTCTATCTCTTCCCCTCTCTGCA
ACCCACCGTGAAGTAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12090:2092..2907+

>mRNA_H-canaliculatus_F_contig12090.1809.1 ID=mRNA_H-canaliculatus_F_contig12090.1809.1|Name=mRNA_H-canaliculatus_F_contig12090.1809.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1020bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12090:2092..2907+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTCCCACGTCCGTCTCTTACGCATTTCTTGCGCATGAAGAGCAGGAA
TGTGCGTCTTGTGCCGCCTTTAGCCTCCAGACAGAGCTTCAACATGACCG
TGAATCTAGGCTGCGAAAGCATATACTCTCACGGGATGGTGGTGCGGGAC
ACCAAAATCAAAGGAAAAATGGCAATGAAGCCTTGTCTCGAGACGTGTAT
ATACCCGTATCTAAACCTGAAAAGGGCGTCGTCCATCCAGGGAATCAACA
AGCACTGCCCTTCGTCACGCACAGGACTCCGCAACGCGGAAAACCAAGAC
AAAAACCACAACGCGACGAGACTTTTCGCGGAGCAAGACCACCGGTCTCG
ATCACGCGCGCGATCCACACAACAACTCGTCAATTGTCCTGTTTTCATCA
TGTGCTTGGACGCACTCGGAACATTTTGCGAAGGAGCTCGGTCGGCCGAG
ATTTACATTTCATCCCTCAAGCGTTACCACACCACCCCACAGAGCGAGAA
TATCTTGTGAATGCTCCCACGTCCGTCTCTTACGCATTTCTTGCGCATGA
AGAGCAGGAATGTGCGTCTTGTGCCGCCTTTAGCCTCCAGACAGAGCTTC
AACATGACCGTGAATCTAGGCTGCGAAAGCATATACTCTCACGGGATGGT
GGTGCGGGACACCAAAATCAAAGGAAAAATGGCAATGAAGCCTTGTCTCG
AGACGTGTATATACCCGTATCTAAACCTGAAAAGGGCGTCGTCCATCCAG
GGAATCAACAAGCACTGCCCTTCGTCACGCACAGGACTCCGCAACGCGGA
AAACCAAGACAAAAACCACAACGCGACGAGACTTTTCGCGGAGCAAGACC
ACCGGTCTCGATCACGCGCGCGATCCACACAACAACTCGTCAATTGTCCT
GTTTTCATCATGTGCTTGGACGCACTCGGAACATTTTGCGAAGGAGCTCG
GTCGGCCGAGATTTACATTTCATCCCTCAAGCGTTACCACACCACCCCAC
AGAGCGAGAATATCTTGTGA
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