mRNA_H-canaliculatus_F_contig12074.1798.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12074.1798.1
Unique NamemRNA_H-canaliculatus_F_contig12074.1798.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12074.1798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12074contigH-canaliculatus_F_contig12074:635..1298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size204
Cds size141
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.692834-UTR-H-canaliculatus_F_contig12074:634..6951622928917.692834-UTR-H-canaliculatus_F_contig12074:634..695Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12074 635..695 +
1696845612.495166-UTR-H-canaliculatus_F_contig12074:634..6951696845612.495166-UTR-H-canaliculatus_F_contig12074:634..695Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12074 635..695 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.7092211-CDS-H-canaliculatus_F_contig12074:695..7471622928917.7092211-CDS-H-canaliculatus_F_contig12074:695..747Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12074 696..747 +
1696845612.5074885-CDS-H-canaliculatus_F_contig12074:695..7471696845612.5074885-CDS-H-canaliculatus_F_contig12074:695..747Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12074 696..747 +
1622928917.720719-CDS-H-canaliculatus_F_contig12074:1209..12981622928917.720719-CDS-H-canaliculatus_F_contig12074:1209..1298Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12074 1210..1298 +
1696845612.5216727-CDS-H-canaliculatus_F_contig12074:1209..12981696845612.5216727-CDS-H-canaliculatus_F_contig12074:1209..1298Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12074 1210..1298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12074.1798.1prot_H-canaliculatus_F_contig12074.1798.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12074 696..1298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12074.1798.1

>prot_H-canaliculatus_F_contig12074.1798.1 ID=prot_H-canaliculatus_F_contig12074.1798.1|Name=mRNA_H-canaliculatus_F_contig12074.1798.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=47bp
MTLEFNLPPLGSCIHTCRLYLVDGVAVDDGTPSTQHPNLVTLHLPPQ
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mRNA from alignment at H-canaliculatus_F_contig12074:635..1298+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12074.1798.1 ID=mRNA_H-canaliculatus_F_contig12074.1798.1|Name=mRNA_H-canaliculatus_F_contig12074.1798.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=664bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12074:635..1298+ (Hapterophycus canaliculatus Oshoro5f female)
CAACAATTGCACCGAGACAAATAAACACTGCCCTTCCAATTTCTGGTGAG
CGTATGTGTGCATGACCCTGGAATTTAATCTCCCCCCCCTAGGATCTTGC
ATACATACATGCAGCAATTGTTCAGTGCGTTCCACAAACATTTCAATGCC
AGCATTCTGTTGGCACCGAACCGTTAGCATGACATTTCCGACCGATCGAT
GTGAACACAATCTGAGGTCTACCTTATCCCATTGTGGTGCAGAAAGGCCC
CCCCAAGTCGTGCGGAGGAGTCCATTTCAGGCGCTCTCGACTGCATTGTA
GCATTGAATCCACTGATACTAGATAAACCTTCTGGACAACACAAACATCA
CTATTATTTAGTCGGACAGAAGAGAATAAGATTGCAGTGCAGGAATCACG
TATGGTAGTATTAGTATTCATCAACCTAAGAACAATCACCCACAAAGGAA
CCAACAGATTGCTTCTCAGATTGCTTCTCCTCATTTTTTACACCACCAAG
ACACCACTGTACCGGCGCCTGCTCCATACTATCCTACGAGCGAGATGCTT
AGATCCTCCGCCTGATGGGGTCTAGGACTGTACCTAGTAGATGGCGTTGC
TGTTGATGACGGAACACCATCAACCCAGCACCCAAATCTTGTCACGCTCC
ACCTACCGCCCCAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12074:635..1298+

>mRNA_H-canaliculatus_F_contig12074.1798.1 ID=mRNA_H-canaliculatus_F_contig12074.1798.1|Name=mRNA_H-canaliculatus_F_contig12074.1798.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=282bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12074:635..1298+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACCCTGGAATTTAATCTCCCCCCCCTAGGATCTTGCATACATACATG
CAATGACCCTGGAATTTAATCTCCCCCCCCTAGGATCTTGCATACATACA
TGCAGACTGTACCTAGTAGATGGCGTTGCTGTTGATGACGGAACACCATC
AACCCAGCACCCAAATCTTGTCACGCTCCACCTACCGCCCCAAGACTGTA
CCTAGTAGATGGCGTTGCTGTTGATGACGGAACACCATCAACCCAGCACC
CAAATCTTGTCACGCTCCACCTACCGCCCCAA
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