mRNA_H-canaliculatus_F_contig12070.1796.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12070.1796.1
Unique NamemRNA_H-canaliculatus_F_contig12070.1796.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12070.1796.1 vs. uniprot
Match: A0A6H5JZA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZA5_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 1.910e-63
Identity = 106/127 (83.46%), Postives = 115/127 (90.55%), Query Frame = 3 
Query:    3 DAEVQEGMFRFVVLYLKRFKDSILVPPGTKLEPTAKEVYLEMLVDHLLEVAGGSGAIVPWYTVRKDLFLDKNAAGRLRNLLQKETNSPGFPIRIQLLDIHAMDYVTARKGRRLDWCVSLKHSSELEP 383
            D E ++GMFRFVVLYLKRFKDSILVPPGTKLEPTAKEV+LEMLV+HLLE AGGSG IVPWY +RKDLFLDKNA+GRLRN L+KE   P FPIRIQLLDI AMDYV +RKGRRL+WCVSLKHSSELEP
Sbjct:  180 DGEQKDGMFRFVVLYLKRFKDSILVPPGTKLEPTAKEVFLEMLVEHLLE-AGGSGGIVPWYNIRKDLFLDKNASGRLRNFLKKENKIPNFPIRIQLLDIRAMDYVNSRKGRRLEWCVSLKHSSELEP 305
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BLAST of mRNA_H-canaliculatus_F_contig12070.1796.1 vs. uniprot
Match: D7FIG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG4_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 3.400e-58
Identity = 99/125 (79.20%), Postives = 111/125 (88.80%), Query Frame = 3 
Query:    3 DAEVQEGMFRFVVLYLKRFKDSILVPPGTKLEPTAKEVYLEMLVDHLLEVAGGSGAIVPWYTVRKDLFLDKNAAGRLRNLLQKETNSPGFPIRIQLLDIHAMDYVTARKGRRLDWCVSLKHSSEL 377
            + E ++GMFRFVVLYLKRFKDSILVPPGTKLEPTAKEV+LEMLV+HLLE AGGSG IVPWY +RKDLFLDKNA+GRLRN L+KE   P FPIRIQLLDI AMDYV +RKGRRL+WCVSLK ++ L
Sbjct:  251 NGEQKDGMFRFVVLYLKRFKDSILVPPGTKLEPTAKEVFLEMLVEHLLE-AGGSGGIVPWYNIRKDLFLDKNASGRLRNFLKKENKIPNFPIRIQLLDIRAMDYVNSRKGRRLEWCVSLKAAAAL 374
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12070.1796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZA5_9PHAE1.910e-6383.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIG4_ECTSI3.400e-5879.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12070contigH-canaliculatus_F_contig12070:222..2164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size388
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12070.1796.1prot_H-canaliculatus_F_contig12070.1796.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12070 222..2141 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.4096754-CDS-H-canaliculatus_F_contig12070:221..2451622928917.4096754-CDS-H-canaliculatus_F_contig12070:221..245Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12070 222..245 -
1696845612.3996375-CDS-H-canaliculatus_F_contig12070:221..2451696845612.3996375-CDS-H-canaliculatus_F_contig12070:221..245Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12070 222..245 -
1622928917.4215915-CDS-H-canaliculatus_F_contig12070:609..7561622928917.4215915-CDS-H-canaliculatus_F_contig12070:609..756Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12070 610..756 -
1696845612.4094152-CDS-H-canaliculatus_F_contig12070:609..7561696845612.4094152-CDS-H-canaliculatus_F_contig12070:609..756Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12070 610..756 -
1622928917.4344864-CDS-H-canaliculatus_F_contig12070:1003..11201622928917.4344864-CDS-H-canaliculatus_F_contig12070:1003..1120Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12070 1004..1120 -
1696845612.4177618-CDS-H-canaliculatus_F_contig12070:1003..11201696845612.4177618-CDS-H-canaliculatus_F_contig12070:1003..1120Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12070 1004..1120 -
1622928917.4510016-CDS-H-canaliculatus_F_contig12070:2066..21411622928917.4510016-CDS-H-canaliculatus_F_contig12070:2066..2141Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12070 2067..2141 -
1696845612.4259744-CDS-H-canaliculatus_F_contig12070:2066..21411696845612.4259744-CDS-H-canaliculatus_F_contig12070:2066..2141Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12070 2067..2141 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.4694016-UTR-H-canaliculatus_F_contig12070:2141..21641622928917.4694016-UTR-H-canaliculatus_F_contig12070:2141..2164Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12070 2142..2164 -
1696845612.4392767-UTR-H-canaliculatus_F_contig12070:2141..21641696845612.4392767-UTR-H-canaliculatus_F_contig12070:2141..2164Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12070 2142..2164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12070.1796.1

>prot_H-canaliculatus_F_contig12070.1796.1 ID=prot_H-canaliculatus_F_contig12070.1796.1|Name=mRNA_H-canaliculatus_F_contig12070.1796.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=121bp
MFRFVVLYLKRFKDSILVPPGTKLEPTAKEVYLEMLVDHLLEVAGGSGAI
VPWYTVRKDLFLDKNAAGRLRNLLQKETNSPGFPIRIQLLDIHAMDYVTA
RKGRRLDWCVSLKHSSELEPQ
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mRNA from alignment at H-canaliculatus_F_contig12070:222..2164-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12070.1796.1 ID=mRNA_H-canaliculatus_F_contig12070.1796.1|Name=mRNA_H-canaliculatus_F_contig12070.1796.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1943bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12070:222..2164- (Hapterophycus canaliculatus Oshoro5f female)
AAGACGCTGAGGTCCAAGAGGGCATGTTCCGCTTCGTGGTGCTCTACCTA
AAGCGCTTCAAGGACTCCATCCTCGTACCCCCAGGAACGAAGCTGGAGGT
GACCGCACGAGTTACTCCTGCTTGTCTTACGCGGGTGCAAGTGAATATCT
CTGATGTTTTAAAATATATCTCTGATGTTGCTGTCTCCTGGAAGTACCTT
GAGACATGAAAAGCGCCAGGCGTTGAACGAGGAGTGGTACGGTGAGGGTC
AGACCTTGCGACGCGCTGCCGCTTGGGGATCGCACAGGATTTCGGCAACT
CGCCGGTAACTTCCCAACGGGGTACACCTGGGCAGTGAAATGCGGTCTGT
CTAACAAGCCGAAGCGTGCTGCTTCCTGAGGAAAGAGAAAGACCGTAAGC
TGCGCGGAATATTCAAAAGGGGATTGTGTCTTTTGCTTTGATCTTCGTCG
CAAAGCTGGCGGCTCGTCGTGACAGTCACCGGCCGATCGATCATGAACCG
CTGGCCGATCCACACGAGAACCCATATCATCTTGCACGTATAGCCTTCTT
CGTAGTTTCGGCCGCTCCGATATTATTCACCGCAAACACAAACCCCTCCC
GTTGTTCCCCACCTCGTGCGATCACGTTTGTCCCCCGAGTGAATCCTCGA
GTCGATAGTATCATTTTGCGTTTGTTGGAGGTTATCTGGCTGCGACCAAT
GCAGTAACCCAGCTGCCATCTGCCCGCGCAGAGGCAACCTGTAGCGTCAC
GGCGGTGCCCGAGCCCTCCGGTATTAATCAGCAAACGTCGCAGTGGTGAC
GAACGGCGTTGCTCCATGACGCTGCCTGTCCGCCACCGCCGCATCATGCT
TGGATCACCCTCACGCCGACTACTGCTGTGTCTTACGCCACCAGTTTACG
GCTTCACATCCGGTACACATGTGGCCCCCTTTACCTGAACTATTGGGAAA
ATTGACCCTGACGTTTGCCAGCCTTATTCAATCCTGAACAGGGTTCCAAC
CCTATCACAAAACCCGTGTCGATGCCCTCCTTCCCCCATGCTAGCCCACG
GCGAAGGAGGTTTACCTGGAGATGCTGGTGGACCATTTGCTGGAGGTGGC
GGGGGGATCGGGAGCGATAGTACCGTGGTACACCGTGAGGAAAGACCTTT
TCCTAGACAAGGTGACGAATGCATGGATGCGTGAATGCCGTCTTCCGTTT
GCTTGTGGCGAGGTTGAGTGATCTGCGGCAAAGCTCGAAATCTGCAGTCA
CAACTGCATCGGTTCCCTTTTCAATGGGCGTCCTACATGTCGGATTTTGC
ACGCGCTCCTGTTCGTCGAGTTGCGGAGAACGAAAGAAGCACAAGTGGAG
GCAGAGGACCCGTAACAGCCGTAACCTCCCGCCCTCTTTTTTTTTTCTTT
TTTCCCAGAACGCCGCGGGGCGCTTGAGGAACCTTCTTCAGAAGGAAACC
AACAGTCCCGGATTCCCCATCAGGATCCAGCTTCTGGACATCCACGCCAT
GGATTACGTCACCGCTAGGAAGGGACGCCGACTCGACTGGTGTGTTTCTC
TCAAGGTGAGAGAAGAAGTCGTACCAGAGGTCCTCTCCCGTAACCTGCAG
CATTTATTGCTGTTACATTGTTGGTTTTTTCAGGACCTCCGTCTATGATG
CATGTGTTTCTAGACAGCACGCGAAAGCAGTGGCTCGTCGGCGGGTTACC
TTGTCTCAGTCTGAGTGGCGCAGCCGTGCCACAGCGGATTGAGGCGCTAG
TATTTTTCCGTCGTGTTCAGTGCCCGTTGCGCGACTTGCATCTTTTCAGC
ACGAAATATACGACATATCTGAAAACGCCTCGCTTTGCTCTGCTCTCATC
TGCCCTCTGCTCTTCTCTGCTCTGCCATGCTCTGCCCTGCCGCGTTCTCC
TCCGGCATCGTGTGCACAGCACTCGAGCGAGCTGGAGCCGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12070:222..2164-

>mRNA_H-canaliculatus_F_contig12070.1796.1 ID=mRNA_H-canaliculatus_F_contig12070.1796.1|Name=mRNA_H-canaliculatus_F_contig12070.1796.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=726bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12070:222..2164- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTCCGCTTCGTGGTGCTCTACCTAAAGCGCTTCAAGGACTCCATCCT
CGTACCCCCAGGAACGAAGCTGGAGATGTTCCGCTTCGTGGTGCTCTACC
TAAAGCGCTTCAAGGACTCCATCCTCGTACCCCCAGGAACGAAGCTGGAG
CCCACGGCGAAGGAGGTTTACCTGGAGATGCTGGTGGACCATTTGCTGGA
GGTGGCGGGGGGATCGGGAGCGATAGTACCGTGGTACACCGTGAGGAAAG
ACCTTTTCCTAGACAAGCCCACGGCGAAGGAGGTTTACCTGGAGATGCTG
GTGGACCATTTGCTGGAGGTGGCGGGGGGATCGGGAGCGATAGTACCGTG
GTACACCGTGAGGAAAGACCTTTTCCTAGACAAGAACGCCGCGGGGCGCT
TGAGGAACCTTCTTCAGAAGGAAACCAACAGTCCCGGATTCCCCATCAGG
ATCCAGCTTCTGGACATCCACGCCATGGATTACGTCACCGCTAGGAAGGG
ACGCCGACTCGACTGGTGTGTTTCTCTCAAGAACGCCGCGGGGCGCTTGA
GGAACCTTCTTCAGAAGGAAACCAACAGTCCCGGATTCCCCATCAGGATC
CAGCTTCTGGACATCCACGCCATGGATTACGTCACCGCTAGGAAGGGACG
CCGACTCGACTGGTGTGTTTCTCTCAAGCACTCGAGCGAGCTGGAGCCGC
AGCACTCGAGCGAGCTGGAGCCGCAG
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