mRNA_H-canaliculatus_F_contig12068.1792.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12068.1792.1
Unique NamemRNA_H-canaliculatus_F_contig12068.1792.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12068.1792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12068contigH-canaliculatus_F_contig12068:2497..3320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12068.1792.1prot_H-canaliculatus_F_contig12068.1792.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12068 2497..3296 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928916.572931-CDS-H-canaliculatus_F_contig12068:2496..27181622928916.572931-CDS-H-canaliculatus_F_contig12068:2496..2718Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12068 2497..2718 -
1696845611.9726822-CDS-H-canaliculatus_F_contig12068:2496..27181696845611.9726822-CDS-H-canaliculatus_F_contig12068:2496..2718Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12068 2497..2718 -
1622928916.5987773-CDS-H-canaliculatus_F_contig12068:3224..32961622928916.5987773-CDS-H-canaliculatus_F_contig12068:3224..3296Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12068 3225..3296 -
1696845611.9844604-CDS-H-canaliculatus_F_contig12068:3224..32961696845611.9844604-CDS-H-canaliculatus_F_contig12068:3224..3296Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12068 3225..3296 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928916.6201768-UTR-H-canaliculatus_F_contig12068:3296..33201622928916.6201768-UTR-H-canaliculatus_F_contig12068:3296..3320Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12068 3297..3320 -
1696845611.9930186-UTR-H-canaliculatus_F_contig12068:3296..33201696845611.9930186-UTR-H-canaliculatus_F_contig12068:3296..3320Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12068 3297..3320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12068.1792.1

>prot_H-canaliculatus_F_contig12068.1792.1 ID=prot_H-canaliculatus_F_contig12068.1792.1|Name=mRNA_H-canaliculatus_F_contig12068.1792.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=98bp
MCAPKYIYPAIGLPDCPHCGDNQQVCWMAPRRSGTPPAVSSVPGPHPMWH
VVIDTQLVTRTGWSLLSRGGFATLARHLRESHVEELHAKKERCRFLC*
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mRNA from alignment at H-canaliculatus_F_contig12068:2497..3320-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12068.1792.1 ID=mRNA_H-canaliculatus_F_contig12068.1792.1|Name=mRNA_H-canaliculatus_F_contig12068.1792.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=824bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12068:2497..3320- (Hapterophycus canaliculatus Oshoro5f female)
CAGGTTCTGGCGCAAAGGGTGTAGATGTGCGCCCCCAAGTACATCTACCC
TGCAATCGGCCTTCCGGACTGTCCACACTGCGGGGATAACCAACAGGTGC
GAGTCACCCTAATTTTCTCGTGATTCGAACACACCATATGCAGCCGAGGG
GAGATTATGTCTGTATCAGCAACATCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCCTCTCTCTCTTCTCTCTATACTAGCGTTGT
ACCCTTGGTGCTCTAGCTATCTGCTGGCTGCAACTCAGGTGGTGAGCAAT
GGTTAGGAACCTAGCAGCCGAGTCGTGCACGCGGAACACGACAGTAAGTA
TACGATTGTGTTTCATTACAAATAAATGCAAGACGTGTGCAGGAGAAGGG
TAAGTAAGAAGGGAGAGTGTGATTGTTGATAGCTGTTGCCTCCACTTTCA
TACGATCTATACTGTAAGGTGTTCGTGCTGAAAGGTGCAAATCGTTGAGT
TCAAGAGGACGTGTGTGCGCTTTTTCGTCCACGAATCGTTTTCATCCATG
CCCTCCTTGCGTACTCAAATGGGCTGTCCTTGGCCATCCGGCGCGCACAC
AGGTTTGCTGGATGGCACCCCGACGTTCAGGAACGCCTCCCGCGGTTTCT
TCTGTGCCCGGCCCTCATCCTATGTGGCACGTTGTAATCGACACCCAGCT
GGTGACCCGTACTGGGTGGAGCCTTCTATCACGAGGAGGCTTCGCGACGT
TGGCTCGTCACCTTCGCGAAAGTCACGTGGAAGAGTTACATGCCAAGAAA
GAGAGGTGCCGATTCTTGTGTTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12068:2497..3320-

>mRNA_H-canaliculatus_F_contig12068.1792.1 ID=mRNA_H-canaliculatus_F_contig12068.1792.1|Name=mRNA_H-canaliculatus_F_contig12068.1792.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=588bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12068:2497..3320- (Hapterophycus canaliculatus Oshoro5f female)
ATGTGCGCCCCCAAGTACATCTACCCTGCAATCGGCCTTCCGGACTGTCC
ACACTGCGGGGATAACCAACAGATGTGCGCCCCCAAGTACATCTACCCTG
CAATCGGCCTTCCGGACTGTCCACACTGCGGGGATAACCAACAGGTTTGC
TGGATGGCACCCCGACGTTCAGGAACGCCTCCCGCGGTTTCTTCTGTGCC
CGGCCCTCATCCTATGTGGCACGTTGTAATCGACACCCAGCTGGTGACCC
GTACTGGGTGGAGCCTTCTATCACGAGGAGGCTTCGCGACGTTGGCTCGT
CACCTTCGCGAAAGTCACGTGGAAGAGTTACATGCCAAGAAAGAGAGGTG
CCGATTCTTGTGTTAAGTTTGCTGGATGGCACCCCGACGTTCAGGAACGC
CTCCCGCGGTTTCTTCTGTGCCCGGCCCTCATCCTATGTGGCACGTTGTA
ATCGACACCCAGCTGGTGACCCGTACTGGGTGGAGCCTTCTATCACGAGG
AGGCTTCGCGACGTTGGCTCGTCACCTTCGCGAAAGTCACGTGGAAGAGT
TACATGCCAAGAAAGAGAGGTGCCGATTCTTGTGTTAA
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