mRNA_H-canaliculatus_F_contig12063.1790.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12063.1790.1
Unique NamemRNA_H-canaliculatus_F_contig12063.1790.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12063.1790.1 vs. uniprot
Match: A0A6H5LE38_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE38_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.790e-44
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = 1
Query:   16 QVRNCSLSTLHAVSALLPVLVLELLVTLAYSCVCVVLYHGVREAPFTTLGSAFMNLFALSTTVNDPDVWMPLYDRNRANVLVFVSFLVVQV 288
            +VRN SLSTLHAVSALLPVLVLELLVTLAY+C CVVLYHGV++APFTTLGSAFMNLFALSTTVNDPDVWMPLYDRNRANVLVFVSFLVVQV
Sbjct:  674 KVRNNSLSTLHAVSALLPVLVLELLVTLAYACGCVVLYHGVKDAPFTTLGSAFMNLFALSTTVNDPDVWMPLYDRNRANVLVFVSFLVVQV 764          
BLAST of mRNA_H-canaliculatus_F_contig12063.1790.1 vs. uniprot
Match: A0A7S2WCP3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCP3_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.010e-19
Identity = 44/85 (51.76%), Postives = 65/85 (76.47%), Query Frame = 1
Query:   79 LELLVTLAYSCVCVVLYHGVR--EAPFTTLGSAFMNLFALSTTVNDPDVWMPLYDRNRANVLVFVSFLVVQVFLLHNILLASVSQ 327
            +EL + +A+SC+ + L+ GV   E  F TLG AF++L+ALSTTVNDPDVW+PL+DRN   +L F  FLV+ ++++HN++LA+V Q
Sbjct:  153 MELFLLVAFSCMALTLFGGVARGEGAFGTLGGAFISLYALSTTVNDPDVWLPLFDRNPGTMLFFGVFLVLWLYIIHNLVLATVYQ 237          
BLAST of mRNA_H-canaliculatus_F_contig12063.1790.1 vs. uniprot
Match: A0A6U4FCQ8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FCQ8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.250e-18
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   79 LELLVTLAYSCVCVVLYHGVREAPFTTLGSAFMNLFALSTTVNDPDVWMPLYDRNRANVLVFVSFLVVQVFLLHNILLASVSQ 327
            +EL + L ++C CV  +  V ++ F  L   F+NLFALSTTVNDPDVW+PLY +NR N L FV FLV  +FLLHN ++A + +
Sbjct:  210 MELYLALVFACACVAFFGTVPDSGFNELSDGFVNLFALSTTVNDPDVWLPLYAQNRWNCLPFVVFLVAFLFLLHNFIIAFIYE 292          
BLAST of mRNA_H-canaliculatus_F_contig12063.1790.1 vs. uniprot
Match: A0A7R9U3R5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3R5_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.010e-17
Identity = 45/103 (43.69%), Postives = 70/103 (67.96%), Query Frame = 1
Query:   19 VRNCSLSTLHAVSALLPVLVLELLVTLAYSCVCVVLYHGVREAPFTTLGSAFMNLFALSTTVNDPDVWMPLYDRNRANVLVFVSFLVVQVFLLHNILLASVSQ 327
            +R+ + + L  +  +L ++ LEL +TL ++C CV  +  V E+ F  L  AF+N+FAL+TTVN+PDVW+ LY R R N LVF+ FLVV +F +HN ++A + +
Sbjct:  133 IRDSTRNILIMLPIVLAIVGLELFLTLVFACACVAFFGPVPESGFYLLSDAFINIFALATTVNNPDVWLGLYARARWNSLVFIVFLVVFLFFIHNFVIAFIYE 235          
BLAST of mRNA_H-canaliculatus_F_contig12063.1790.1 vs. uniprot
Match: K8YQT3_NANGC (Two-pore calcium channel n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YQT3_NANGC)

HSP 1 Score: 77.8 bits (190), Expect = 1.910e-14
Identity = 43/109 (39.45%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   13 EQVRNCSLSTLHAVSALLPVLVLELLVTLAYSCVCVVLYHGV------REAPFTTLGSAFMNLFALSTTVNDPDVWMPLYDRNRANVLVFVSFLVVQVFLLHNILLASV 321
            ++ RN  L  L  V +++  + +E L  L ++C  V+LY  V       +  F +L  AF++L+ LS TVNDPD+++P Y  +  N ++FV+FL++  FLLHNI+LASV
Sbjct:  276 KKARNAMLDYLRTVPSVIQWIGIEFLSVLVFACFAVILYASVDRGGASEQTAFLSLNRAFISLYELSLTVNDPDIYLPYYRIDALNAILFVAFLILTFFLLHNIILASV 384          
BLAST of mRNA_H-canaliculatus_F_contig12063.1790.1 vs. uniprot
Match: W7TKQ2_9STRA (Two-pore calcium channel n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKQ2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.630e-13
Identity = 43/111 (38.74%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   13 EQVRNCSLSTLHAVSALLPVLVLELLVTLAYSCVCVVLY-HGVR-----EAPFTTLGSAFMNLFALSTTVNDPDVWMPLYDRNRANVLVFVSFLVVQVFLLHNILLASVSQ 327
            +  RN  +S +  + ++   + LE  V + Y+C CVVLY H  R     +  F    +AF++L++LS TVN+PDV++P Y R   +++VF SFLV+  FL+HNI+L  + Q
Sbjct:  234 QHARNAMISYMKTLPSVTLWIGLEFFVIIIYACFCVVLYAHLDRYGESGQKAFENFAAAFVSLYSLSLTVNNPDVYLPYYKRGFLHIIVFASFLVITYFLIHNIILVRIYQ 344          
BLAST of mRNA_H-canaliculatus_F_contig12063.1790.1 vs. uniprot
Match: A0A4D9D2R4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2R4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.670e-13
Identity = 43/111 (38.74%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   13 EQVRNCSLSTLHAVSALLPVLVLELLVTLAYSCVCVVLY-HGVR-----EAPFTTLGSAFMNLFALSTTVNDPDVWMPLYDRNRANVLVFVSFLVVQVFLLHNILLASVSQ 327
            +  RN  +S +  + ++   + LE  V + Y+C CVVLY H  R     +  F    +AF++L++LS TVN+PDV++P Y R   +++VF SFLV+  FL+HNI+L  + Q
Sbjct:  234 QHARNAMISYMKTLPSVTLWIGLEFFVIIIYACFCVVLYAHLDRYGESGQKAFQNFSAAFVSLYSLSLTVNNPDVYLPYYKRGFLHIIVFASFLVITYFLIHNIILVRIYQ 344          
BLAST of mRNA_H-canaliculatus_F_contig12063.1790.1 vs. uniprot
Match: A0A448ZR52_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZR52_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.560e-10
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   61 LLPVLVLELLVTLAYSCVCVVLYHGVREAPFTTLGSAFMNLFALSTTVNDPDVWMPLYDRNRANVLVFVSFLVVQVFLLHNILLASVSQ 327
            LL V+++E+ + L ++ V   LY+      F TL  A+++LFALSTTV +P +WMP Y+ +  N + FV F+VV +F LH+++L+ V Q
Sbjct:  258 LLRVILIEMFLILTFAAVACRLYYNYDS--FQTLPQAWLSLFALSTTVVNPSIWMPAYNESPWNAVFFVIFIVVSIFYLHSLVLSVVFQ 344          
BLAST of mRNA_H-canaliculatus_F_contig12063.1790.1 vs. uniprot
Match: A0A1E7FH53_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FH53_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.140e-10
Identity = 36/89 (40.45%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   61 LLPVLVLELLVTLAYSCVCVVLYHGVREAPFTTLGSAFMNLFALSTTVNDPDVWMPLYDRNRANVLVFVSFLVVQVFLLHNILLASVSQ 327
            LL V+++E  + L ++ +   LY+      F +L  A+++LFALSTTV +P +WMP Y+ +R N + FV F++V VF LH+++L+ V Q
Sbjct:  218 LLHVILIEFFLILIFAAIACRLYYDYES--FQSLPQAWVSLFALSTTVVNPSIWMPAYNESRWNAVFFVIFIIVSVFYLHSLVLSVVFQ 304          
BLAST of mRNA_H-canaliculatus_F_contig12063.1790.1 vs. uniprot
Match: A0A1E7FH91_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FH91_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 7.770e-8
Identity = 32/86 (37.21%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   70 VLVLELLVTLAYSCVCVVLYHGVREAPFTTLGSAFMNLFALSTTVNDPDVWMPLYDRNRANVLVFVSFLVVQVFLLHNILLASVSQ 327
            VL++E ++ LA++ V   ++    E+ F  + S++ +LFALSTTVN+P +WMP+Y    +  + FV+F++  VF  H+++L+ V Q
Sbjct:   52 VLIIEFVLILAFAAVACRMFGNEYES-FQDITSSWYSLFALSTTVNNPGIWMPIYATTPSCSIFFVTFIITCVFYYHSLVLSVVFQ 136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12063.1790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5LE38_9PHAE1.790e-4493.41EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2WCP3_9STRA4.010e-1951.76Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6U4FCQ8_9STRA4.250e-1851.81Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U3R5_9STRA2.010e-1743.69Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
K8YQT3_NANGC1.910e-1439.45Two-pore calcium channel n=3 Tax=Monodopsidaceae T... [more]
W7TKQ2_9STRA1.630e-1338.74Two-pore calcium channel n=1 Tax=Nannochloropsis g... [more]
A0A4D9D2R4_9STRA1.670e-1338.74Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A448ZR52_9STRA1.560e-1041.57Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7FH53_9STRA2.140e-1040.45Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A1E7FH91_9STRA7.770e-837.21Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12063contigH-canaliculatus_F_contig12063:232..976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue3.1e-08
Seed eggNOG ortholog2850.Phatrdraft1654
EggNOG free text desc.membrane depolarization during action potential
EggNOG OGsKOG2301@1,KOG2301@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928916.5064092-CDS-H-canaliculatus_F_contig12063:231..4701622928916.5064092-CDS-H-canaliculatus_F_contig12063:231..470Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12063 232..470 +
1696845611.9467945-CDS-H-canaliculatus_F_contig12063:231..4701696845611.9467945-CDS-H-canaliculatus_F_contig12063:231..470Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12063 232..470 +
1622928916.5249147-CDS-H-canaliculatus_F_contig12063:888..9761622928916.5249147-CDS-H-canaliculatus_F_contig12063:888..976Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12063 889..976 +
1696845611.9621067-CDS-H-canaliculatus_F_contig12063:888..9761696845611.9621067-CDS-H-canaliculatus_F_contig12063:888..976Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12063 889..976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12063.1790.1prot_H-canaliculatus_F_contig12063.1790.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12063 232..976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12063.1790.1

>prot_H-canaliculatus_F_contig12063.1790.1 ID=prot_H-canaliculatus_F_contig12063.1790.1|Name=mRNA_H-canaliculatus_F_contig12063.1790.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=109bp
NRSREQVRNCSLSTLHAVSALLPVLVLELLVTLAYSCVCVVLYHGVREAP
FTTLGSAFMNLFALSTTVNDPDVWMPLYDRNRANVLVFVSFLVVQVFLLH
NILLASVSQ
back to top

mRNA from alignment at H-canaliculatus_F_contig12063:232..976+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12063.1790.1 ID=mRNA_H-canaliculatus_F_contig12063.1790.1|Name=mRNA_H-canaliculatus_F_contig12063.1790.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=745bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12063:232..976+ (Hapterophycus canaliculatus Oshoro5f female)
AACCGTTCCCGGGAACAGGTTCGGAACTGTTCCCTTTCCACACTCCACGC GGTGAGCGCCCTCCTTCCGGTCCTGGTGCTGGAGCTCTTGGTCACCCTGG CGTACTCGTGCGTCTGCGTGGTGCTCTACCACGGAGTTCGGGAGGCCCCG TTCACCACCCTAGGGAGCGCGTTCATGAACCTGTTCGCGCTGTCGACGAC CGTCAACGACCCGGACGTGTGGATGCCGCTCTACGACAGGTGTGCTTTGT AGGATGGCTTAGGAGCCGGGCCGTTGCTAGTGGTGGTGCTGGCGGAGGTG CCGATACTGAATTCGATGAGTGCGTTGTGTTTTTTCTAGGCTGGACGACG ACACGCCCATTACCCAGAGCCCGCTTTCTCCATTCCCCTTCCTCCTTCTT TCCCGCGGTTCCAGTCCACCGTTCACGATTTAGCTTTTTCGGATTTTTTT TGTGTCCGTAACGGAACGGTGACTATCGGTCTCTTAGGATTTGCTGTCCA TCGCGCGCGAAACCCCTCCCCGCTCCGCCTGTCCCCGCTGACTCTCGGTT CCCGTTGCTCGATCTACTTGCTCTTCTTCACGCGTTCCCCGCACGATTTC GCCGCGTGTTCCCGACCGACACGACGGCGCTGCCGATGGCCGTCACGGCG CCTACAGGAACCGCGCCAACGTGCTGGTGTTCGTGTCCTTCCTGGTGGTT CAGGTGTTTCTCCTCCACAACATCCTTCTCGCCTCGGTGAGTCAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12063:232..976+

>mRNA_H-canaliculatus_F_contig12063.1790.1 ID=mRNA_H-canaliculatus_F_contig12063.1790.1|Name=mRNA_H-canaliculatus_F_contig12063.1790.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=654bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12063:232..976+ (Hapterophycus canaliculatus Oshoro5f female)
AACCGTTCCCGGGAACAGGTTCGGAACTGTTCCCTTTCCACACTCCACGC
GGTGAGCGCCCTCCTTCCGGTCCTGGTGCTGGAGCTCTTGGTCACCCTGG
CGTACTCGTGCGTCTGCGTGGTGCTCTACCACGGAGTTCGGGAGGCCCCG
TTCACCACCCTAGGGAGCGCGTTCATGAACCTGTTCGCGCTGTCGACGAC
CGTCAACGACCCGGACGTGTGGATGCCGCTCTACGACAGAACCGTTCCCG
GGAACAGGTTCGGAACTGTTCCCTTTCCACACTCCACGCGGTGAGCGCCC
TCCTTCCGGTCCTGGTGCTGGAGCTCTTGGTCACCCTGGCGTACTCGTGC
GTCTGCGTGGTGCTCTACCACGGAGTTCGGGAGGCCCCGTTCACCACCCT
AGGGAGCGCGTTCATGAACCTGTTCGCGCTGTCGACGACCGTCAACGACC
CGGACGTGTGGATGCCGCTCTACGACAGGAACCGCGCCAACGTGCTGGTG
TTCGTGTCCTTCCTGGTGGTTCAGGTGTTTCTCCTCCACAACATCCTTCT
CGCCTCGGTGAGTCAGGAACCGCGCCAACGTGCTGGTGTTCGTGTCCTTC
CTGGTGGTTCAGGTGTTTCTCCTCCACAACATCCTTCTCGCCTCGGTGAG
TCAG
back to top