mRNA_H-canaliculatus_F_contig12058.1789.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12058.1789.1
Unique NamemRNA_H-canaliculatus_F_contig12058.1789.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12058.1789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12058contigH-canaliculatus_F_contig12058:2303..3291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size277
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928916.423333-CDS-H-canaliculatus_F_contig12058:2303..25291622928916.423333-CDS-H-canaliculatus_F_contig12058:2303..2529Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12058 2304..2529 -
1696845611.9278147-CDS-H-canaliculatus_F_contig12058:2303..25291696845611.9278147-CDS-H-canaliculatus_F_contig12058:2303..2529Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12058 2304..2529 -
1622928916.4369442-CDS-H-canaliculatus_F_contig12058:3241..32911622928916.4369442-CDS-H-canaliculatus_F_contig12058:3241..3291Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12058 3242..3291 -
1696845611.936428-CDS-H-canaliculatus_F_contig12058:3241..32911696845611.936428-CDS-H-canaliculatus_F_contig12058:3241..3291Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12058 3242..3291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12058.1789.1prot_H-canaliculatus_F_contig12058.1789.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12058 2304..3291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12058.1789.1

>prot_H-canaliculatus_F_contig12058.1789.1 ID=prot_H-canaliculatus_F_contig12058.1789.1|Name=mRNA_H-canaliculatus_F_contig12058.1789.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=92bp
PSAAAAGDSSPNGDWSGYDLIDRSTASSSSTESDRPPGRSRHLAATSDRE
LRRGTRAAADAPRNRSGAADSRDEPEGEEDEEREEEQGLGSA
back to top

mRNA from alignment at H-canaliculatus_F_contig12058:2303..3291-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12058.1789.1 ID=mRNA_H-canaliculatus_F_contig12058.1789.1|Name=mRNA_H-canaliculatus_F_contig12058.1789.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=989bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12058:2303..3291- (Hapterophycus canaliculatus Oshoro5f female)
CCGTCAGCTGCAGCAGCGGGTGACAGTAGTCCGAACGGGGACTGGTCGGG
GTGAGTTGGTGCTTTGTCGTGCTTGATTAGTTTTGCGTTGTATTGAGGTG
GTGATTGCTGTTGTTGTTGTTGCTGTTCTGTTGTTTCGTCGTTGTTGTTA
TTGCTGCTGCTGTTGTTGGTTGGGGTCGTCATGGCGGTGTTACTGCTGTT
GCTGCTGATGTCGCAGCGATGTGGTTGTCTATTGTTGTTGATAAGGCCAA
ATGATTTTTTTGTCAGAAGAATCAACGCCCGTTCAAGATGTGAGCCAAAA
ATGAATGTCCCCCGTCGCAAACGGGCGAGAAATAAGAATAGAGATCATGT
AGCGTAGCGCAAAAGCGACCGGAGCGAGACTCGAGGGTGGAAAAATTGTA
CAAGCACGGCCGCAGTGGACCAATATAATATCTGCTCGTTTTTTTTGTGG
GCATAGCGGTAAGGATGCACGTAATCAGATGGCCACGGCAGGTTGTAGCA
GGCAGGGTCGTCCAAGCACACTCCCGGAAACGTTCGGGCTGGCTCTTGAT
GGGGAACCTGTCCCTACAGGAGGGACAGCATTGTCATAGCTGGTGGGATG
CACGGAGTGGGGTGTTCCACTTCCTGGCCTTCGCCCCTTTCGACATCTCC
GCGTCCCTGTAGACTATGCGTTCGGGTCGTTCGCAAACCGCAGACCGTTT
CCCTCCTCCTCTCCTCGCCCCTTTACCCCCTCCGATCCCCCGCCGACGTT
CGCAAACCCCAGGTACGACCTGATCGACCGCAGCACGGCTTCCTCCTCGT
CTACGGAGAGCGACAGGCCGCCGGGCAGATCGCGTCACCTGGCGGCCACA
TCCGACCGCGAGCTTCGCCGTGGAACCAGGGCCGCTGCCGATGCCCCCCG
CAATCGCAGCGGTGCCGCCGACAGCCGAGACGAGCCGGAAGGGGAAGAGG
ACGAAGAACGAGAAGAGGAACAAGGGCTCGGAAGCGCAC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12058:2303..3291-

>mRNA_H-canaliculatus_F_contig12058.1789.1 ID=mRNA_H-canaliculatus_F_contig12058.1789.1|Name=mRNA_H-canaliculatus_F_contig12058.1789.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=552bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12058:2303..3291- (Hapterophycus canaliculatus Oshoro5f female)
CCGTCAGCTGCAGCAGCGGGTGACAGTAGTCCGAACGGGGACTGGTCGGG
CCGTCAGCTGCAGCAGCGGGTGACAGTAGTCCGAACGGGGACTGGTCGGG
GTACGACCTGATCGACCGCAGCACGGCTTCCTCCTCGTCTACGGAGAGCG
ACAGGCCGCCGGGCAGATCGCGTCACCTGGCGGCCACATCCGACCGCGAG
CTTCGCCGTGGAACCAGGGCCGCTGCCGATGCCCCCCGCAATCGCAGCGG
TGCCGCCGACAGCCGAGACGAGCCGGAAGGGGAAGAGGACGAAGAACGAG
AAGAGGAACAAGGGCTCGGAAGCGCAGTACGACCTGATCGACCGCAGCAC
GGCTTCCTCCTCGTCTACGGAGAGCGACAGGCCGCCGGGCAGATCGCGTC
ACCTGGCGGCCACATCCGACCGCGAGCTTCGCCGTGGAACCAGGGCCGCT
GCCGATGCCCCCCGCAATCGCAGCGGTGCCGCCGACAGCCGAGACGAGCC
GGAAGGGGAAGAGGACGAAGAACGAGAAGAGGAACAAGGGCTCGGAAGCG
CA
back to top