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Homology
BLAST of mRNA_H-canaliculatus_F_contig12050.1788.1 vs. uniprot
Match: D8LPZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ9_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 3.600e-11 Identity = 122/278 (43.88%), Postives = 133/278 (47.84%), Query Frame = 1
Query: 736 DSVVPRRSLSPLSLPTLQWPSPVMPVGVGGGGPMMDGVXXXXXXXDHIGRGGPGGGRSASPFGMLSGPPPGLGXXXXXXXXXXSRPLRGGTREPP-------------------------VEAGAGPGHIXXXXXXXFRAPPGQPPS-----------------KRYRMVRGGSERGVSRRGGWSCRSQDVGTGDFSHP--SSCACVSLPPRXXXXXXXXXRGNGAPFLGTTYLSQSAPASSLFPQGSSVGSFDSSNALGAMLDGRHRGS-NGFVRVG 1434
D+VVPRRSLSPLSLPTL WPSPVM GGGP D XXXXXXX RS SPFG+LS XXXX + P RGGTR V G G G XXXXXXX KRYRM R G + +S + G G + P SS LPP XXXXXXX FLG +Y+S S+PA S P SVGSFDSSNALGA+LD RHRGS NGFVR G
Sbjct: 324 DAVVPRRSLSPLSLPTLPWPSPVM-----GGGPGPDSHXXXXXXXXXXXXXXXXX-RSTSPFGLLSX----XXXXXXGEGAGGTIPRRGGTRXXXXXXXXXXXGHLXXXXXXXXXXXXGGVGVGVGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRYRM-RSGDDYNLSPSMSNNILGYGAGAGSLASPERSSPYRQGLPPPXXXXXXXLPNEQRPHFLGRSYVSASSPAPSHAP---SVGSFDSSNALGAILDARHRGSSNGFVRGG 587
BLAST of mRNA_H-canaliculatus_F_contig12050.1788.1 vs. uniprot
Match: A0A6H5L7F3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F3_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 2.160e-8 Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 1
Query: 1 RETCTRSVKRKSGPAKGTKYTTRRSRMEAGIAEPINPKSK 120
RETCTRSVKRKSGPAKGTKYTTRR RMEAGIAEP + SK
Sbjct: 61 RETCTRSVKRKSGPAKGTKYTTRRVRMEAGIAEPASSSSK 100
BLAST of mRNA_H-canaliculatus_F_contig12050.1788.1 vs. uniprot
Match: A0A6H5L858_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L858_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 2.090e-6 Identity = 74/159 (46.54%), Postives = 82/159 (51.57%), Query Frame = 1
Query: 1180 VGTGDFSHP--SSCACVSLPPRXXXXXXXXXRGNGAPFLGTTYLSQSAPASSLFPQGSSVGSFDSSNALGAMLDGRHRGS-NGFVRVGSRGQAGNNYGVG-----GXXXXXXXRADQDLS-----AGDTGEALGYRRPQHEQEQGWEYTHPGPGMRFLP 1617
G G + P SS LPP XXXXXXX FLG +YLS S+PA S G SVGSFDSSNALGA+LD RHRGS NGFVR G G+G XXXX R DQDLS GD G Q+ G ++ G RFLP
Sbjct: 10 AGAGSLASPERSSPYRQGLPPPXXXXXXXLPNEQRPHFLGRSYLSASSPAPS---HGPSVGSFDSSNALGAILDARHRGSSNGFVRGGGXXXR---VGIGIAPHXXXXXXSRRRPDQDLSPQGDNTGDAGAGAASSAMHARQQYGKAFSDH-QGKRFLP 161
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Ec32 ortholog description | Zn(2)-C6 fungal-type DNA-binding domain |
| Ec32 ortholog | Ec-15_001500.2 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1704 |
| Cds size | 1704 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622928916.310627-CDS-H-canaliculatus_F_contig12050:236..520 | 1622928916.310627-CDS-H-canaliculatus_F_contig12050:236..520 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12050 237..520 + |
| 1696845611.875086-CDS-H-canaliculatus_F_contig12050:236..520 | 1696845611.875086-CDS-H-canaliculatus_F_contig12050:236..520 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12050 237..520 + |
| 1622928916.328592-CDS-H-canaliculatus_F_contig12050:592..1432 | 1622928916.328592-CDS-H-canaliculatus_F_contig12050:592..1432 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12050 593..1432 + |
| 1696845611.8874953-CDS-H-canaliculatus_F_contig12050:592..1432 | 1696845611.8874953-CDS-H-canaliculatus_F_contig12050:592..1432 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12050 593..1432 + |
| 1622928916.34882-CDS-H-canaliculatus_F_contig12050:1516..1584 | 1622928916.34882-CDS-H-canaliculatus_F_contig12050:1516..1584 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12050 1517..1584 + |
| 1696845611.897175-CDS-H-canaliculatus_F_contig12050:1516..1584 | 1696845611.897175-CDS-H-canaliculatus_F_contig12050:1516..1584 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12050 1517..1584 + |
| 1622928916.3643234-CDS-H-canaliculatus_F_contig12050:2230..2306 | 1622928916.3643234-CDS-H-canaliculatus_F_contig12050:2230..2306 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12050 2231..2306 + |
| 1696845611.906494-CDS-H-canaliculatus_F_contig12050:2230..2306 | 1696845611.906494-CDS-H-canaliculatus_F_contig12050:2230..2306 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12050 2231..2306 + |
| 1622928916.3773088-CDS-H-canaliculatus_F_contig12050:2468..2904 | 1622928916.3773088-CDS-H-canaliculatus_F_contig12050:2468..2904 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12050 2469..2904 + |
| 1696845611.915665-CDS-H-canaliculatus_F_contig12050:2468..2904 | 1696845611.915665-CDS-H-canaliculatus_F_contig12050:2468..2904 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12050 2469..2904 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12050.1788.1 >prot_H-canaliculatus_F_contig12050.1788.1 ID=prot_H-canaliculatus_F_contig12050.1788.1|Name=mRNA_H-canaliculatus_F_contig12050.1788.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=568bp
RETCTRSVKRKSGPAKGTKYTTRRSRMEAGIAEPINPKSKNSSKPKPPRL GQVVGGGRGGGRGAGRGGGRGGGRGGCATTAAIAAAAEGTPVRRGQQHHT STAMASTFPANAGGPGGRGGAKGKDGRAGGVVTGGGGGGGLGGGGQLGHG VVVGVSSSGANGGGGGGEMHSGSTLSSAHPHHDGGSLLSLGDGMSSPFSP GRGGGGGGGVRGGGRSAGGGVLNNHGSEAGGIHHHHDHHRRQSSTDSVVP RRSLSPLSLPTLQWPSPVMPVGVGGGGPMMDGVGVGPGGPDHIGRGGPGG GRSASPFGMLSGPPPGLGGGGGGGGGGGSRPLRGGTREPPVEAGAGPGHI PGHMPGHFRAPPGQPPSKRYRMVRGGSERGVSRRGGWSCRSQDVGTGDFS HPSSCACVSLPPRPPPPPPPPPRGNGAPFLGTTYLSQSAPASSLFPQGSS VGSFDSSNALGAMLDGRHRGSNGFVRVGSRGQAGNNYGVGGGGGGGGGRA DQDLSAGDTGEALGYRRPQHEQEQGWEYTHPGPGMRFLPPPASPGGSRAS VDERYGGGGGGNAAARWR back to topmRNA from alignment at H-canaliculatus_F_contig12050:237..2904+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig12050.1788.1 ID=mRNA_H-canaliculatus_F_contig12050.1788.1|Name=mRNA_H-canaliculatus_F_contig12050.1788.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2668bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12050:237..2904+ (Hapterophycus canaliculatus Oshoro5f female) CGCGAGACTTGCACACGGAGCGTGAAGAGGAAGAGCGGGCCGGCCAAGGG
AACCAAATACACAACCCGCCGCTCGCGCATGGAGGCCGGCATCGCCGAGC
CCATCAACCCCAAGAGTAAGAACAGCAGCAAGCCGAAGCCTCCGCGATTG
GGTCAGGTCGTGGGCGGGGGCCGCGGCGGGGGCCGCGGCGCGGGGCGCGG
GGGGGGCCGGGGCGGCGGTCGCGGCGGGTGTGCCACAACTGCGGCCATCG
CCGCCGCCGCCGAAGGTACCCCCGTGCGGCGGGGGTCCCGCAAGAGCTTC
GCCTCGCCCGCGGTTGTGTCTCCGATCGTGTCCGTCAAGCTGTCCTCGCC
CGTGAGTCAGCAGCACCATACCTCGACCGCCATGGCCTCGACCTTCCCAG
CAAACGCTGGTGGTCCCGGAGGCCGGGGCGGGGCGAAGGGGAAGGACGGG
CGTGCGGGTGGTGTCGTCACAGGAGGAGGAGGAGGAGGCGGGTTGGGGGG
CGGGGGGCAGCTGGGACACGGTGTCGTCGTCGGTGTCAGCAGCAGCGGCG
CTAACGGCGGCGGCGGCGGCGGCGAGATGCACTCCGGCTCGACCCTGTCG
TCTGCCCACCCACATCATGACGGCGGCTCTCTTCTTTCGCTGGGAGATGG
GATGAGCTCTCCGTTCTCGCCCGGGAGAGGAGGAGGAGGAGGAGGAGGCG
TGAGAGGGGGCGGCAGAAGCGCCGGCGGCGGCGTGCTCAACAACCACGGG
AGCGAAGCTGGCGGCATCCACCACCACCACGACCACCACCGCAGGCAGAG
CAGCACCGACTCGGTGGTCCCGCGCCGCTCTCTGTCCCCGCTCTCCCTGC
CGACGCTGCAGTGGCCTTCCCCGGTGATGCCGGTGGGTGTGGGGGGAGGG
GGGCCCATGATGGACGGGGTAGGCGTCGGGCCAGGAGGACCAGATCACAT
TGGACGCGGCGGCCCGGGGGGGGGCCGGTCCGCCAGCCCGTTCGGTATGT
TGTCAGGGCCGCCGCCGGGGTTGGGAGGAGGAGGAGGAGGAGGAGGAGGG
GGAGGCAGCCGGCCGCTCAGGGGAGGCACTCGCGAGCCGCCGGTGGAGGC
CGGCGCGGGGCCCGGACACATACCGGGGCACATGCCGGGGCACTTCCGAG
CCCCCCCTGGACAGCCTCCGTCGAAGCGCTATCGCATGGTGAGAGGGTCC
TAGCGGGGAGGTCGTGGGGGGAGGGAGGTGCTCGTCTCCCGTCGCCGCGC
GTACTCGGCCTCGAGGTTTTGCGGTAGCAGCGGTAGCGAGCGAGGTGTCT
CGAGGCGTGGAGGGTGGAGCTGCAGGTCACAGGATGTAGGCACGGGGGGT
GTACGAGGAGGTCCGTTCCCGACCGGTTGGACGGTGTGCCGCGCGTGAAG
GCGGGGGCGGCGTCGGGTCCGGGCGGCCTCGGCCGCGACGCCCGCGAAAG
CGATGACCGCGAAAGCGATGACCGCGAAAGCGATGACCGCGAAAGCGAAG
ACCGCGAAGGCGATGACCGCGTGTGTGTAGCGTGGGTGCGAGCTCTTGTT
GCGTCCTTCTTATCCGTGGAGCCGATGGACAGACGTGGCACGCGAGTGTC
GCCGTGAGAACCATGGCGAGATGGGAGTCTGAGTCGGGCCTCACGCAGTC
GCCGCCCTCCTTGGGCCCGAAGTGTGGCTGATCGTGGTGGAGTCGGAGGC
GGAGTCGCGTTTTCGAGCAAGGCGGTGTGCGTTTTCGCCGAAGGTCGCTG
AGACTCCGCCTGATTGTGTTGGCTCGGCGCTGAAATGGTCGTGGATGGCT
TTTCGTAGTCTGGTGCAGTTTTCGTGGAATACTCTTCTTCTGCCACACGT
GCCCTCGCGCTGTTTATACCCCAGGTGATGCCATGTGGTGGACGCACGTG
GAATCCGCAGAATTCCCACTGGCGTTGGTGACTGCCGTCCCTTCTCCCCC
CGCACCCACCGTGGACGAAAAAAACTGTCTCGGAAGTGGGCAAGATTTTT
CGCACCCTTCCTCATGCGCGTGCGTTTCCTTGCCACCCCGCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCGGTTTATCGCCGCAAACGAAAAATTCGCGAT
TGAACAGTCCCCGCCGTACATGCCGAGAGACATGCCCCTGGCGCAGAGAC
CAGGAGAAGAGTACGCCATCCCCGGCGCCCCTATGGGCATCCTCAGCGGC
GCCCGCATCGGCTCACCGGAAAGGGGCGGCAGCGGGAACGGCGCGCCGTT
CCTCGGCACGACCTACCTCTCCCAATCAGCCCCCGCGAGCTCTTTGTTCC
CCCAAGGATCGAGCGTCGGGTCCTTCGACAGCTCCAATGCTCTCGGAGCC
ATGTTGGACGGGCGCCATCGCGGGAGCAACGGGTTTGTTCGAGTCGGGAG
CAGGGGGCAAGCCGGGAACAACTACGGTGTCGGCGGCGGAGGCGGCGGCG
GCGGCGGCCGCGCGGACCAGGACCTTTCGGCCGGGGACACCGGCGAAGCC
TTGGGGTACCGGCGGCCGCAGCACGAGCAGGAGCAGGGCTGGGAGTACAC
TCACCCGGGGCCGGGGATGCGCTTCTTGCCCCCGCCCGCCTCTCCCGGCG
GCTCGAGGGCCTCGGTGGACGAGCGCTACGGCGGCGGCGGCGGCGGCAAC
GCGGCCGCGCGATGGCGC back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig12050:237..2904+ >mRNA_H-canaliculatus_F_contig12050.1788.1 ID=mRNA_H-canaliculatus_F_contig12050.1788.1|Name=mRNA_H-canaliculatus_F_contig12050.1788.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3408bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12050:237..2904+ (Hapterophycus canaliculatus Oshoro5f female) CGCGAGACTTGCACACGGAGCGTGAAGAGGAAGAGCGGGCCGGCCAAGGG AACCAAATACACAACCCGCCGCTCGCGCATGGAGGCCGGCATCGCCGAGC CCATCAACCCCAAGAGTAAGAACAGCAGCAAGCCGAAGCCTCCGCGATTG GGTCAGGTCGTGGGCGGGGGCCGCGGCGGGGGCCGCGGCGCGGGGCGCGG GGGGGGCCGGGGCGGCGGTCGCGGCGGGTGTGCCACAACTGCGGCCATCG CCGCCGCCGCCGAAGGTACCCCCGTGCGGCGGGGCGCGAGACTTGCACAC GGAGCGTGAAGAGGAAGAGCGGGCCGGCCAAGGGAACCAAATACACAACC CGCCGCTCGCGCATGGAGGCCGGCATCGCCGAGCCCATCAACCCCAAGAG TAAGAACAGCAGCAAGCCGAAGCCTCCGCGATTGGGTCAGGTCGTGGGCG GGGGCCGCGGCGGGGGCCGCGGCGCGGGGCGCGGGGGGGGCCGGGGCGGC GGTCGCGGCGGGTGTGCCACAACTGCGGCCATCGCCGCCGCCGCCGAAGG TACCCCCGTGCGGCGGGGTCAGCAGCACCATACCTCGACCGCCATGGCCT CGACCTTCCCAGCAAACGCTGGTGGTCCCGGAGGCCGGGGCGGGGCGAAG GGGAAGGACGGGCGTGCGGGTGGTGTCGTCACAGGAGGAGGAGGAGGAGG CGGGTTGGGGGGCGGGGGGCAGCTGGGACACGGTGTCGTCGTCGGTGTCA GCAGCAGCGGCGCTAACGGCGGCGGCGGCGGCGGCGAGATGCACTCCGGC TCGACCCTGTCGTCTGCCCACCCACATCATGACGGCGGCTCTCTTCTTTC GCTGGGAGATGGGATGAGCTCTCCGTTCTCGCCCGGGAGAGGAGGAGGAG GAGGAGGAGGCGTGAGAGGGGGCGGCAGAAGCGCCGGCGGCGGCGTGCTC AACAACCACGGGAGCGAAGCTGGCGGCATCCACCACCACCACGACCACCA CCGCAGGCAGAGCAGCACCGACTCGGTGGTCCCGCGCCGCTCTCTGTCCC CGCTCTCCCTGCCGACGCTGCAGTGGCCTTCCCCGGTGATGCCGGTGGGT GTGGGGGGAGGGGGGCCCATGATGGACGGGGTAGGCGTCGGGCCAGGAGG ACCAGATCACATTGGACGCGGCGGCCCGGGGGGGGGCCGGTCCGCCAGCC CGTTCGGTATGTTGTCAGGGCCGCCGCCGGGGTTGGGAGGAGGAGGAGGA GGAGGAGGAGGGGGAGGCAGCCGGCCGCTCAGGGGAGGCACTCGCGAGCC GCCGGTGGAGGCCGGCGCGGGGCCCGGACACATACCGGGGCACATGCCGG GGCACTTCCGAGCCCCCCCTGGACAGCCTCCGTCGAAGCGCTATCGCATG GTGAGAGGTCAGCAGCACCATACCTCGACCGCCATGGCCTCGACCTTCCC AGCAAACGCTGGTGGTCCCGGAGGCCGGGGCGGGGCGAAGGGGAAGGACG GGCGTGCGGGTGGTGTCGTCACAGGAGGAGGAGGAGGAGGCGGGTTGGGG GGCGGGGGGCAGCTGGGACACGGTGTCGTCGTCGGTGTCAGCAGCAGCGG CGCTAACGGCGGCGGCGGCGGCGGCGAGATGCACTCCGGCTCGACCCTGT CGTCTGCCCACCCACATCATGACGGCGGCTCTCTTCTTTCGCTGGGAGAT GGGATGAGCTCTCCGTTCTCGCCCGGGAGAGGAGGAGGAGGAGGAGGAGG CGTGAGAGGGGGCGGCAGAAGCGCCGGCGGCGGCGTGCTCAACAACCACG GGAGCGAAGCTGGCGGCATCCACCACCACCACGACCACCACCGCAGGCAG AGCAGCACCGACTCGGTGGTCCCGCGCCGCTCTCTGTCCCCGCTCTCCCT GCCGACGCTGCAGTGGCCTTCCCCGGTGATGCCGGTGGGTGTGGGGGGAG GGGGGCCCATGATGGACGGGGTAGGCGTCGGGCCAGGAGGACCAGATCAC ATTGGACGCGGCGGCCCGGGGGGGGGCCGGTCCGCCAGCCCGTTCGGTAT GTTGTCAGGGCCGCCGCCGGGGTTGGGAGGAGGAGGAGGAGGAGGAGGAG GGGGAGGCAGCCGGCCGCTCAGGGGAGGCACTCGCGAGCCGCCGGTGGAG GCCGGCGCGGGGCCCGGACACATACCGGGGCACATGCCGGGGCACTTCCG AGCCCCCCCTGGACAGCCTCCGTCGAAGCGCTATCGCATGGTGAGAGGCG GTAGCGAGCGAGGTGTCTCGAGGCGTGGAGGGTGGAGCTGCAGGTCACAG GATGTAGGCACGGGGGCGGTAGCGAGCGAGGTGTCTCGAGGCGTGGAGGG TGGAGCTGCAGGTCACAGGATGTAGGCACGGGGGATTTTTCGCACCCTTC CTCATGCGCGTGCGTTTCCTTGCCACCCCGCCCCCCCCCCCCCCCCCCCC CCCCCCCCCGATTTTTCGCACCCTTCCTCATGCGCGTGCGTTTCCTTGCC ACCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCGGGAACGGCGCGC CGTTCCTCGGCACGACCTACCTCTCCCAATCAGCCCCCGCGAGCTCTTTG TTCCCCCAAGGATCGAGCGTCGGGTCCTTCGACAGCTCCAATGCTCTCGG AGCCATGTTGGACGGGCGCCATCGCGGGAGCAACGGGTTTGTTCGAGTCG GGAGCAGGGGGCAAGCCGGGAACAACTACGGTGTCGGCGGCGGAGGCGGC GGCGGCGGCGGCCGCGCGGACCAGGACCTTTCGGCCGGGGACACCGGCGA AGCCTTGGGGTACCGGCGGCCGCAGCACGAGCAGGAGCAGGGCTGGGAGT ACACTCACCCGGGGCCGGGGATGCGCTTCTTGCCCCCGCCCGCCTCTCCC GGCGGCTCGAGGGCCTCGGTGGACGAGCGCTACGGCGGCGGCGGCGGCGG CAACGCGGCCGCGCGATGGCGCCGGGAACGGCGCGCCGTTCCTCGGCACG ACCTACCTCTCCCAATCAGCCCCCGCGAGCTCTTTGTTCCCCCAAGGATC GAGCGTCGGGTCCTTCGACAGCTCCAATGCTCTCGGAGCCATGTTGGACG GGCGCCATCGCGGGAGCAACGGGTTTGTTCGAGTCGGGAGCAGGGGGCAA GCCGGGAACAACTACGGTGTCGGCGGCGGAGGCGGCGGCGGCGGCGGCCG CGCGGACCAGGACCTTTCGGCCGGGGACACCGGCGAAGCCTTGGGGTACC GGCGGCCGCAGCACGAGCAGGAGCAGGGCTGGGAGTACACTCACCCGGGG CCGGGGATGCGCTTCTTGCCCCCGCCCGCCTCTCCCGGCGGCTCGAGGGC CTCGGTGGACGAGCGCTACGGCGGCGGCGGCGGCGGCAACGCGGCCGCGC GATGGCGC back to top
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