mRNA_H-canaliculatus_F_contig12049.1785.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12049.1785.1
Unique NamemRNA_H-canaliculatus_F_contig12049.1785.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12049.1785.1 vs. uniprot
Match: D7FWW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW0_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 3.110e-40
Identity = 153/290 (52.76%), Postives = 172/290 (59.31%), Query Frame = 1 
Query:    7 QHPRSQAALDSNGNQPSINRGSFASAEGESVPMLPGGAQSSLVSTTILGADGMRATGGAXXXXXXXXXXXXXXXXXXXXXXXXXXSSAGKTMDASAEGIGMEEGVDGGIGAPSAMSGISDGRSGRSAHIRTSPVEPGDETSDICAGEGADEYALRRRSGGGGRPPYSIENPDGHAGSAXXXXXXXXXXXXGQRGRDGGSG---------VPPLESRGEDEEADEDMSFYEENSRVQE-MEDSFADLPTPAPGGAAA-GAGAV-GPDGKPILAQRSGSSEGWVDQYTNSSI 840
            QHP+SQA LDSNG   SI R S ASAEGE VPMLPGGAQSSLVST I+ AD MR  G                    XXXXXXXX SAGKTMDASAEG   E    GG G    +SG    RSGRS   R+   + GD  SDI  GEGADEYA+RR SG G RP           G  XXXXXXXXXXXX                   +P L +  + E  D DMSFY+ NSR++E + D+FAD+PTPAP GA   G+GAV G DG+    QRS SSEGWVDQYT+SS+
Sbjct:   12 QHPQSQAPLDSNGPPQSIYRSSVASAEGERVPMLPGGAQSSLVSTAIVAADAMRVRG---------TPGGEEDDDGSXXXXXXXXXSAGKTMDASAEGAAAE----GGFGDGDMVSGGVSDRSGRSTRQRSR--DQGDHASDIHPGEGADEYAIRR-SGSGNRPTRFSNGMANGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDIPELATPRDGE--DGDMSFYDGNSRLEEEVVDNFADIPTPAPRGAGGRGSGAVAGADGRTFRTQRSNSSEGWVDQYTSSSL 283
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BLAST of mRNA_H-canaliculatus_F_contig12049.1785.1 vs. uniprot
Match: A0A6H5JJI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI5_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.360e-37
Identity = 160/287 (55.75%), Postives = 183/287 (63.76%), Query Frame = 1 
Query:    7 QHPRSQAALDSNGNQPSINRGSFASAEGESVPMLPGGAQSSLVSTTILGADGMRATGGAXXXXXXXXXXXXXXXXXXXXXXXXXXSSAGKTMDASAEGIGMEEGVDGGIGAPSAMSGISDGRSGRSAHIRTSPVEPGDETSDICAGEGADEYALRRRSGGGGRPPYSIENPDGHAGSAXXXXXXXXXXXXGQR------GRDGGSGVPPLESRGEDEEADEDMSFYEENSRVQE-MEDSFADLPTPAPGGAAA-GAGAV-GPDGKPILAQRSGSSEGWVDQYTNSSI 840
            QHP+SQA LDSNG Q SI R S ASAEGE VPMLPGGAQSSLVST I+ AD MR                  XXXXXXXXXXXXX SAGKTMDASAEG   E    G  G    +SG+SD RSGRS   R+   + GD+ SDI  GEGADEYA+R+ SG G RP           G  XXXXXXXXXXXX         GR+    +P L +  + E  D DMSFY+ NSR++E + D+FAD+PTPAP GA A G+ AV G DG+    QRS SSEGWVDQYT+SS+
Sbjct:  994 QHPQSQAPLDSNGPQQSIYRSSVASAEGERVPMLPGGAQSSLVSTAIVAADAMRVR--------ETRVRGEEXXXXXXXXXXXXXXSAGKTMDASAEGAAAE----GDFGDGDMVSGLSD-RSGRSTLQRSR--DQGDQASDIHPGEGADEYAIRQ-SGSGNRPTRFSNGMANGTGXXXXXXXXXXXXXXXXXXXARGGGREEDIDMPELATPRDGE--DGDMSFYDGNSRLEEEVLDNFADIPTPAPRGAGARGSEAVAGADGRTFRTQRSNSSEGWVDQYTSSSL 1262
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12049.1785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWW0_ECTSI3.110e-4052.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJI5_9PHAE1.360e-3755.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12049contigH-canaliculatus_F_contig12049:338..3694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2280
Cds size828
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12049.1785.1prot_H-canaliculatus_F_contig12049.1785.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12049 1876..3592 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928915.5159488-UTR-H-canaliculatus_F_contig12049:337..7141622928915.5159488-UTR-H-canaliculatus_F_contig12049:337..714Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12049 338..714 -
1696845611.4681196-UTR-H-canaliculatus_F_contig12049:337..7141696845611.4681196-UTR-H-canaliculatus_F_contig12049:337..714Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12049 338..714 -
1622928915.5676112-UTR-H-canaliculatus_F_contig12049:902..18751622928915.5676112-UTR-H-canaliculatus_F_contig12049:902..1875Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12049 903..1875 -
1696845611.479903-UTR-H-canaliculatus_F_contig12049:902..18751696845611.479903-UTR-H-canaliculatus_F_contig12049:902..1875Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12049 903..1875 -
1622928915.6244774-UTR-H-canaliculatus_F_contig12049:3592..36941622928915.6244774-UTR-H-canaliculatus_F_contig12049:3592..3694Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12049 3593..3694 -
1696845611.5075223-UTR-H-canaliculatus_F_contig12049:3592..36941696845611.5075223-UTR-H-canaliculatus_F_contig12049:3592..3694Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12049 3593..3694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928915.5900714-CDS-H-canaliculatus_F_contig12049:1875..24791622928915.5900714-CDS-H-canaliculatus_F_contig12049:1875..2479Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12049 1876..2479 -
1696845611.4904473-CDS-H-canaliculatus_F_contig12049:1875..24791696845611.4904473-CDS-H-canaliculatus_F_contig12049:1875..2479Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12049 1876..2479 -
1622928915.6070561-CDS-H-canaliculatus_F_contig12049:3368..35921622928915.6070561-CDS-H-canaliculatus_F_contig12049:3368..3592Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12049 3369..3592 -
1696845611.498771-CDS-H-canaliculatus_F_contig12049:3368..35921696845611.498771-CDS-H-canaliculatus_F_contig12049:3368..3592Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12049 3369..3592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12049.1785.1

>prot_H-canaliculatus_F_contig12049.1785.1 ID=prot_H-canaliculatus_F_contig12049.1785.1|Name=mRNA_H-canaliculatus_F_contig12049.1785.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=276bp
MLPGGAQSSLVSTTILGADGMRATGGAGAGRGGDNDGSGGAGDADGGGGG
GGGSSAGKTMDASAEGIGMEEGVDGGIGAPSAMSGISDGRSGRSAHIRTS
PVEPGDETSDICAGEGADEYALRRRSGGGGRPPYSIENPDGHAGSAAVAA
AAAAAAAAGQRGRDGGSGVPPLESRGEDEEADEDMSFYEENSRVQEMEDS
FADLPTPAPGGAAAGAGAVGPDGKPILAQRSGSSEGWVDQYTNSSIGGSK
EDLTGAPQQADAAATADRARLTPTS*
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mRNA from alignment at H-canaliculatus_F_contig12049:338..3694-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12049.1785.1 ID=mRNA_H-canaliculatus_F_contig12049.1785.1|Name=mRNA_H-canaliculatus_F_contig12049.1785.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3357bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12049:338..3694- (Hapterophycus canaliculatus Oshoro5f female)
TCCCAGCAACACCCGCGATCGCAAGCCGCGCTGGACAGCAACGGGAACCA
GCCGAGCATCAACCGCGGCAGTTTCGCCTCGGCCGAGGGGGAGAGCGTGC
CGATGCTGCCCGGGGGGGCGCAGTCATCTCTAGTTTCCACGACCATCCTC
GGCGCCGACGGCATGAGGGCGACGGGGGGAGCGGGGGCAGGGCGGGGCGG
CGACAACGACGGGAGCGGGGGCGCGGGCGACGCCGACGGCGGCGGCGGCG
GCGGTGGCGGCAGCTCTGCGGGGAAGACCATGGACGCGTCGGCAGAGGGG
ATCGGCATGGAAGAGGGTGTCGATGGGTGAGAGAGAGGACTGTCGACAAG
GGAGGGAAGGACAGCAACGCCTTCCTGGTCATGCCCTCTTGTTTTGTGTG
GAGCCCTCCTTGTCTATCTCGTTTTGCTCGTAAGAGTGCGGTAAATGGGA
GGTGGCGTGTCGAGGAGGGCAGGTAACACAGGCTGGTTGGGGTAAAGAAG
CAAAGTTTTGACATTCCCCTGGACGTGGTGTGTGCCTCGAGGGCCGCGGG
GTCTCGTCACCCAGTGTCGTTTTGGACTCGGCGGTGGACGATTGGCTGCT
CACTTCCGAGTTTGTCGAGGAATTGATTGGACGGACAGTCGGGTCACACA
CATCCGAGCACCAGCGCCCCGCCCAGGCGTCTTAACTAAAGCGACGTAGC
GACGGGGGGCGAGCGTCGCGATGCTCGAAAGGGGCTAAAATCAGACCTGA
GAATCCAGATCGCTGTGTAACCCCTCGCCATGCGTCGAAAGCCTCTACAA
GCGTGGAGCATCGGTGTGGGTTTCCGCTCATGACGGATTTCGTCTGTCTA
CCGTGGATATCCACCATGTTCAGTCGTTTGCCGAAAAGCCGTGCCCATGA
AAACTTGGTGGAGGTACTGCTGCTGTGTGTGATTGACGAAAAAAGAAGTC
CTCCAATGAATCCCCCTTCCCCGTCCTGCTGCCCCCACCCGTATTTTCTT
CTTTCCCTGTGACTTAAAAAAAATTCCACTTAGCCGGTACATAGCCCGCG
CGACGATCTCTCCCGATTCCCTGTGAAGCCCCCTTCTCTTATTCTCGTTC
CGATCCCCCGGTTCTGACGCAACTGTCGGGCTCACGCGCAAGCCCCCTCC
TGAAGCCTCAACACGTCCCACCATGTTCCTCTCGTGTCGTCAACCCTGCC
TCTCGTGGCGCACAGCGGCATCGGAGCGCCCTCGGCCATGTCCGGTATCT
CCGACGGCCGATCGGGGCGATCCGCGCACATCCGAACTTCGCCGGTGGAG
CCGGGCGACGAAACGTCGGACATCTGCGCGGGCGAAGGGGCCGACGAATA
CGCCCTTCGACGGCGATCCGGCGGCGGCGGTCGGCCGCCCTACTCGATCG
AAAATCCTGACGGACACGCAGGGTCAGCAGCGGTGGCGGCGGCCGCGGCG
GCCGCGGCGGCAGCCGGCCAGCGGGGCAGAGACGGCGGCAGCGGTGTTCC
CCCCTTGGAAAGCCGGGGGGAAGACGAAGAGGCGGACGAGGACATGTCTT
TCTATGAGGAGAACTCGCGGGTGCAGGAGATGGAGGACAGCTTCGCGGAC
CTCCCCACGCCCGCACCCGGAGGCGCGGCGGCGGGGGCGGGGGCGGTGGG
GCCGGATGGAAAGCCCATCCTTGCACAGAGAAGTGGCAGCTCGGAGGGAT
GGGTGGACCAGTACACGAACAGCTCGATCGGGGGGTCGAAGGAGGATTTA
ACGGGGGCACCACAACAAGCGGATGCGGCGGCGACGGCAGACAGGGCTCG
CTTGACACCTACGTCCTAACTCACTCGACGAAGCGCGGCATTTTATTTTA
CCGCGGATCGTTTGTGTTTGGACTGGACACAAACCCTTGGGAGGTGTTGG
GGTGGGGGGAGAGGCCCTGTATGGCTTTCTACGGCGGACCGGTCGAATCG
GCTTGTGCTTGTGTGTGTGTTCTTGTGTTCTTGTGTGAGGGTTGTGGAAG
AATTTTACGTTGGCAGGAGAATTCCTCCCGTTTCGGAAAGAAGACTGAGG
ACAGTTAAGTCGGCGGGGGACCGACACTTGGGATTTTCACTTTTTTTTAG
ATCGGAGTCGGTCGGTAGTCCAAATCGCTCTAGCTGTTTGCTAGGACTGG
GTTTGTCGCCATCGATGACAAGGGATACGGTCGCAGAGGTCGGAAGTGCC
CGGAGCGGAATGGGTAGGCAGGGCGCGCGCGATCGGAGCTTGCGAGTCGC
AGCGCCCTGGTGACGGAGGAGTCTGCTGGTTTGAACTTTTGCGCTCTCTA
GGCCAGTGGCGCCCGCGGACGCTTGCAGCTATTCCCAACCCTGACTGGGT
TAAAATGGTGAAAAAGGGCGACCAGGGGTAGGGGAGTGTAGACCTAATGT
CACGGCGAATCCTGAAGCGGTCTTTGTACGGGGTGGGCGAGTCTCGGCGG
AGGCGGTAAGGATAAAAGCATTGGAGGATTATATAGCTGGCGTTCGAAGC
GTTCCACCTGGCCTCGTGGGCAGCCTAGCCGCGTTGAGGACCGCTCCTAT
GCCTTCCCATTTCCCGTGACGATATTTTTTCAAAGATCGTTATATCCGCG
AAGCGTATACAAGTACCGACTGATGTGACGCGGAGTTTTCGTGAGAGGGA
GAATTTTTTTTCACCCCCTTCGCTCTTGTCCCAGCGCGTTCCCCCCCCCG
CCCGATCGTGGCGGCCGGCCACAATGTGCCAGAGCCCAGCTAGCTCTGGT
TTGGCCGGGCCACGACAGGTCTTGTTTGCTATTTTGCACGAGGTTCGTGG
AGGCCTGTGTCTTCTCGTTCGCCTTTGGGAAGGAACGAGGAGTGAGGGGA
TCGTGTAGCATTCGCTATCGAATATTTAGGTTTGTGTGTTGAAACGCCGG
CGGGGGTGGTCGTTTGAATGTGCTGCGACCTAGGAGGATGCGGCAGGGGG
GATTGGGGGTGGGGGGAGGGGGGTAAAGAGTCCATAAAATTTTTAACAGT
ACCCAAAGTATGAACACGTGGGCCTAGAGTGGACCTCTCGCTAAGATAGA
TAGCATGACCGCCGTGTGTTGCTGCTGTCGCTCCTTGCCGCTGCTGCTGC
TGTTGCTGTTGCTTCTCGTGTTTTCCATGATTCTTCGGCCTTTCGTAACG
TTGGTGGTTCGTAGCCGTACGCGTGCCCTCATGTTGTTTCTCCCTCAGGC
TGTGCATACGAACATGAAAATATTTCCCACCTTTCTATCAATAATTTTTC
AGAGGAAGGAGTGTTGCTTCACCATCAGTCTCAACGGAGCTCTCCACTAT
GCCTCTCTCCGTTCATGCGTGCGTCTTGATTGTACTTGCTTCCTTCTGTT
CATGCTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12049:338..3694-

>mRNA_H-canaliculatus_F_contig12049.1785.1 ID=mRNA_H-canaliculatus_F_contig12049.1785.1|Name=mRNA_H-canaliculatus_F_contig12049.1785.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1656bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12049:338..3694- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGCCCGGGGGGGCGCAGTCATCTCTAGTTTCCACGACCATCCTCGG
CGCCGACGGCATGAGGGCGACGGGGGGAGCGGGGGCAGGGCGGGGCGGCG
ACAACGACGGGAGCGGGGGCGCGGGCGACGCCGACGGCGGCGGCGGCGGC
GGTGGCGGCAGCTCTGCGGGGAAGACCATGGACGCGTCGGCAGAGGGGAT
CGGCATGGAAGAGGGTGTCGATGGATGCTGCCCGGGGGGGCGCAGTCATC
TCTAGTTTCCACGACCATCCTCGGCGCCGACGGCATGAGGGCGACGGGGG
GAGCGGGGGCAGGGCGGGGCGGCGACAACGACGGGAGCGGGGGCGCGGGC
GACGCCGACGGCGGCGGCGGCGGCGGTGGCGGCAGCTCTGCGGGGAAGAC
CATGGACGCGTCGGCAGAGGGGATCGGCATGGAAGAGGGTGTCGATGGCG
GCATCGGAGCGCCCTCGGCCATGTCCGGTATCTCCGACGGCCGATCGGGG
CGATCCGCGCACATCCGAACTTCGCCGGTGGAGCCGGGCGACGAAACGTC
GGACATCTGCGCGGGCGAAGGGGCCGACGAATACGCCCTTCGACGGCGAT
CCGGCGGCGGCGGTCGGCCGCCCTACTCGATCGAAAATCCTGACGGACAC
GCAGGGTCAGCAGCGGTGGCGGCGGCCGCGGCGGCCGCGGCGGCAGCCGG
CCAGCGGGGCAGAGACGGCGGCAGCGGTGTTCCCCCCTTGGAAAGCCGGG
GGGAAGACGAAGAGGCGGACGAGGACATGTCTTTCTATGAGGAGAACTCG
CGGGTGCAGGAGATGGAGGACAGCTTCGCGGACCTCCCCACGCCCGCACC
CGGAGGCGCGGCGGCGGGGGCGGGGGCGGTGGGGCCGGATGGAAAGCCCA
TCCTTGCACAGAGAAGTGGCAGCTCGGAGGGATGGGTGGACCAGTACACG
AACAGCTCGATCGGGGGGTCGAAGGAGGATTTAACGGGGGCACCACAACA
AGCGGATGCGGCGGCGACGGCAGACAGGGCTCGCTTGACACCTACGTCCT
AACGGCATCGGAGCGCCCTCGGCCATGTCCGGTATCTCCGACGGCCGATC
GGGGCGATCCGCGCACATCCGAACTTCGCCGGTGGAGCCGGGCGACGAAA
CGTCGGACATCTGCGCGGGCGAAGGGGCCGACGAATACGCCCTTCGACGG
CGATCCGGCGGCGGCGGTCGGCCGCCCTACTCGATCGAAAATCCTGACGG
ACACGCAGGGTCAGCAGCGGTGGCGGCGGCCGCGGCGGCCGCGGCGGCAG
CCGGCCAGCGGGGCAGAGACGGCGGCAGCGGTGTTCCCCCCTTGGAAAGC
CGGGGGGAAGACGAAGAGGCGGACGAGGACATGTCTTTCTATGAGGAGAA
CTCGCGGGTGCAGGAGATGGAGGACAGCTTCGCGGACCTCCCCACGCCCG
CACCCGGAGGCGCGGCGGCGGGGGCGGGGGCGGTGGGGCCGGATGGAAAG
CCCATCCTTGCACAGAGAAGTGGCAGCTCGGAGGGATGGGTGGACCAGTA
CACGAACAGCTCGATCGGGGGGTCGAAGGAGGATTTAACGGGGGCACCAC
AACAAGCGGATGCGGCGGCGACGGCAGACAGGGCTCGCTTGACACCTACG
TCCTAA
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