prot_H-canaliculatus_F_contig12028.1777.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig12028.1777.1
Unique Nameprot_H-canaliculatus_F_contig12028.1777.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length142
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12028.1777.1 vs. uniprot
Match: D8LCN1_ECTSI (Breast cancer 2 like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN1_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 9.260e-40
Identity = 90/145 (62.07%), Postives = 97/145 (66.90%), Query Frame = 0 
Query:    1 WYPIDASLDGALAHFLRKGH-KITPGTKLAVSNASLEAGTGAVVPSHSSLRSNEGPATTPGGGGG--AADAMDPLELLRRREAGEFPPGAGPRLRLVVNSCRRARWDARLGFLRPRQREARGGTGGAGGREEPAALEVPLCTVVP 142
            WYPIDA+LDGALAHFLR+G  KI PGTKLA++NA+L A                             A + MDPLELLRRR+AGEFPPGAGPRLRL VNSCRRARWDARLGF  PRQ       GG GG  EPAALEVPLCTVVP
Sbjct: 2939 WYPIDAALDGALAHFLRRGKGKIAPGTKLAIANAALGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVNPMDPLELLRRRDAGEFPPGAGPRLRLAVNSCRRARWDARLGFFWPRQGRRAEEEGGPGG-VEPAALEVPLCTVVP 3082
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12028.1777.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCN1_ECTSI9.260e-4062.07Breast cancer 2 like n=1 Tax=Ectocarpus siliculosu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 1..54
e-value: 1.0E-6
score: 30.6
IPR015187BRCA2, OB1PFAMPF09103BRCA-2_OB1coord: 1..110
e-value: 3.3E-12
score: 46.4
IPR015525Breast cancer type 2 susceptibility proteinPANTHERPTHR11289BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2coord: 1..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12028contigH-canaliculatus_F_contig12028:107..826 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12028.1777.1mRNA_H-canaliculatus_F_contig12028.1777.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig12028 107..828 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig12028.1777.1 ID=prot_H-canaliculatus_F_contig12028.1777.1|Name=mRNA_H-canaliculatus_F_contig12028.1777.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=142bp
WYPIDASLDGALAHFLRKGHKITPGTKLAVSNASLEAGTGAVVPSHSSLR
SNEGPATTPGGGGGAADAMDPLELLRRREAGEFPPGAGPRLRLVVNSCRR
ARWDARLGFLRPRQREARGGTGGAGGREEPAALEVPLCTVVP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015525BRCA2
IPR015187BRCA2_OB_1