mRNA_H-canaliculatus_F_contig12027.1776.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12027.1776.1
Unique NamemRNA_H-canaliculatus_F_contig12027.1776.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12027.1776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12027contigH-canaliculatus_F_contig12027:1989..2596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size609
Cds size573
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928914.0488167-UTR-H-canaliculatus_F_contig12027:1988..20231622928914.0488167-UTR-H-canaliculatus_F_contig12027:1988..2023Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12027 1989..2023 +
1696845610.7344654-UTR-H-canaliculatus_F_contig12027:1988..20231696845610.7344654-UTR-H-canaliculatus_F_contig12027:1988..2023Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12027 1989..2023 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928914.070845-CDS-H-canaliculatus_F_contig12027:2023..25961622928914.070845-CDS-H-canaliculatus_F_contig12027:2023..2596Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12027 2024..2596 +
1696845610.7470818-CDS-H-canaliculatus_F_contig12027:2023..25961696845610.7470818-CDS-H-canaliculatus_F_contig12027:2023..2596Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12027 2024..2596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12027.1776.1prot_H-canaliculatus_F_contig12027.1776.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12027 2024..2596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12027.1776.1

>prot_H-canaliculatus_F_contig12027.1776.1 ID=prot_H-canaliculatus_F_contig12027.1776.1|Name=mRNA_H-canaliculatus_F_contig12027.1776.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=191bp
MHISLAMGATTLNFYFSQQTTAKTYSQQRSSLSLFLFSAPAFPRPPFHNQ
PSSPSIPAQHSFLLTIMALTTAEKAKLASLSAVEQAALKTMGAEQKKSIL
QEKHAANVYIQSLDQFSRKGEGHFTIHQLSPALATQLRKENICLVARFKA
RAFPKAEACANNKQQTATSSHRDKLCIQQMTRYRERHLFTA
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mRNA from alignment at H-canaliculatus_F_contig12027:1989..2596+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12027.1776.1 ID=mRNA_H-canaliculatus_F_contig12027.1776.1|Name=mRNA_H-canaliculatus_F_contig12027.1776.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=608bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12027:1989..2596+ (Hapterophycus canaliculatus Oshoro5f female)
GCAGGTGGTTGTTTTAGGTAGAGGAAAGTGAAGAAATGCATATTAGTCTC
GCCATGGGGGCTACTACGTTGAATTTTTACTTTTCCCAACAGACCACAGC
AAAAACGTACTCGCAGCAGCGCAGCAGTCTCTCACTCTTCTTGTTCTCTG
CCCCTGCTTTCCCGCGCCCTCCTTTTCACAACCAACCGTCTTCTCCCTCC
ATCCCGGCACAACACAGCTTTCTCTTGACCATCATGGCACTCACAACGGC
CGAAAAAGCGAAGCTGGCATCGTTGTCGGCTGTGGAGCAGGCCGCTCTAA
AAACTATGGGGGCCGAGCAGAAGAAGTCTATCCTCCAAGAAAAGCATGCT
GCCAACGTTTATATCCAAAGCTTAGACCAGTTTTCGCGAAAAGGAGAGGG
GCACTTCACCATACATCAACTCTCGCCCGCTCTCGCCACGCAGCTGCGGA
AAGAAAACATTTGTCTGGTCGCGCGTTTCAAAGCGAGAGCTTTCCCCAAA
GCGGAAGCTTGTGCGAACAACAAACAGCAGACTGCGACCTCTTCCCACAG
GGACAAGCTTTGTATCCAGCAAATGACGCGCTATCGTGAACGACATTTGT
TTACAGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12027:1989..2596+

>mRNA_H-canaliculatus_F_contig12027.1776.1 ID=mRNA_H-canaliculatus_F_contig12027.1776.1|Name=mRNA_H-canaliculatus_F_contig12027.1776.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1146bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12027:1989..2596+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCATATTAGTCTCGCCATGGGGGCTACTACGTTGAATTTTTACTTTTC
CCAACAGACCACAGCAAAAACGTACTCGCAGCAGCGCAGCAGTCTCTCAC
TCTTCTTGTTCTCTGCCCCTGCTTTCCCGCGCCCTCCTTTTCACAACCAA
CCGTCTTCTCCCTCCATCCCGGCACAACACAGCTTTCTCTTGACCATCAT
GGCACTCACAACGGCCGAAAAAGCGAAGCTGGCATCGTTGTCGGCTGTGG
AGCAGGCCGCTCTAAAAACTATGGGGGCCGAGCAGAAGAAGTCTATCCTC
CAAGAAAAGCATGCTGCCAACGTTTATATCCAAAGCTTAGACCAGTTTTC
GCGAAAAGGAGAGGGGCACTTCACCATACATCAACTCTCGCCCGCTCTCG
CCACGCAGCTGCGGAAAGAAAACATTTGTCTGGTCGCGCGTTTCAAAGCG
AGAGCTTTCCCCAAAGCGGAAGCTTGTGCGAACAACAAACAGCAGACTGC
GACCTCTTCCCACAGGGACAAGCTTTGTATCCAGCAAATGACGCGCTATC
GTGAACGACATTTGTTTACAGCCATGCATATTAGTCTCGCCATGGGGGCT
ACTACGTTGAATTTTTACTTTTCCCAACAGACCACAGCAAAAACGTACTC
GCAGCAGCGCAGCAGTCTCTCACTCTTCTTGTTCTCTGCCCCTGCTTTCC
CGCGCCCTCCTTTTCACAACCAACCGTCTTCTCCCTCCATCCCGGCACAA
CACAGCTTTCTCTTGACCATCATGGCACTCACAACGGCCGAAAAAGCGAA
GCTGGCATCGTTGTCGGCTGTGGAGCAGGCCGCTCTAAAAACTATGGGGG
CCGAGCAGAAGAAGTCTATCCTCCAAGAAAAGCATGCTGCCAACGTTTAT
ATCCAAAGCTTAGACCAGTTTTCGCGAAAAGGAGAGGGGCACTTCACCAT
ACATCAACTCTCGCCCGCTCTCGCCACGCAGCTGCGGAAAGAAAACATTT
GTCTGGTCGCGCGTTTCAAAGCGAGAGCTTTCCCCAAAGCGGAAGCTTGT
GCGAACAACAAACAGCAGACTGCGACCTCTTCCCACAGGGACAAGCTTTG
TATCCAGCAAATGACGCGCTATCGTGAACGACATTTGTTTACAGCC
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