mRNA_H-canaliculatus_F_contig12022.1775.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12022.1775.1
Unique NamemRNA_H-canaliculatus_F_contig12022.1775.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12022.1775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12022contigH-canaliculatus_F_contig12022:983..1783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size317
Cds size183
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12022.1775.1prot_H-canaliculatus_F_contig12022.1775.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12022 983..1649 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928913.9544446-CDS-H-canaliculatus_F_contig12022:982..10461622928913.9544446-CDS-H-canaliculatus_F_contig12022:982..1046Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12022 983..1046 -
1696845610.7082272-CDS-H-canaliculatus_F_contig12022:982..10461696845610.7082272-CDS-H-canaliculatus_F_contig12022:982..1046Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12022 983..1046 -
1622928913.9732213-CDS-H-canaliculatus_F_contig12022:1530..16491622928913.9732213-CDS-H-canaliculatus_F_contig12022:1530..1649Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12022 1531..1649 -
1696845610.7164283-CDS-H-canaliculatus_F_contig12022:1530..16491696845610.7164283-CDS-H-canaliculatus_F_contig12022:1530..1649Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12022 1531..1649 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928913.9902544-UTR-H-canaliculatus_F_contig12022:1649..17831622928913.9902544-UTR-H-canaliculatus_F_contig12022:1649..1783Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12022 1650..1783 -
1696845610.7248874-UTR-H-canaliculatus_F_contig12022:1649..17831696845610.7248874-UTR-H-canaliculatus_F_contig12022:1649..1783Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12022 1650..1783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12022.1775.1

>prot_H-canaliculatus_F_contig12022.1775.1 ID=prot_H-canaliculatus_F_contig12022.1775.1|Name=mRNA_H-canaliculatus_F_contig12022.1775.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=61bp
MEKETAMLYGIGLIPPPFWHSAGASRCLRRENVALLVWRLLSLFRHPEMH
NCSTHTHHRAQ
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mRNA from alignment at H-canaliculatus_F_contig12022:983..1783-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12022.1775.1 ID=mRNA_H-canaliculatus_F_contig12022.1775.1|Name=mRNA_H-canaliculatus_F_contig12022.1775.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=801bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12022:983..1783- (Hapterophycus canaliculatus Oshoro5f female)
AGCTCAGCGAGGAGGTAGTTTTGTTCTTGGCGTTCATTGTCAGGCCACAT
TCGCGAAGGACGCATGCGTGCCCAGCCTAGAACGACGTTCACCAAGTGCT
TGGCGCTGCTCGAAATTGCATCGAGATAGAGTGGATGGAGAAGGAGACGG
CAATGCTCTACGGTATTGGGCTGATCCCGCCACCCTTTTGGCACTCTGCG
GGTGCCTCCCGTTGCCTTCGTAGGGAGAACGTCGCTTTGTTGGTGTGGCG
ATTGTCTTTTGAAAATAGGTTTAACAACACTAAAGGAATACCATCTGAGG
CATACACTGTCCCAGAGGGCTTTTGTCAATTCCTTTGAGTAAGGGTTCCG
TACAATTGACAACACACCAGCCTTTCCATTAGTTGAAAGGTAGATTAGAT
ACGCAAAGAACATGAGTAGGAGGGGCAAAAAACCAAGTGGTTTGTGTTGA
GATGAACAACGAAGTGGACAACAGGTGGTTGGAAGTACGTGGATGTGACG
GTGAACCGTGAAGCGATAGCAATGAATGTATGACCCATACTTCCTGTGAT
GAGTCGCCGTGAGGTGGGATTCCCTGTCCGACGGCCTGATGATCCATCGT
TCGAACAGCTGGTTTGCTTGACAGATGATTCATAAAGTCTTCATTGTCGT
ACATGGGACGAAAACACGCGAATCTGTTCACACCTGAGAGCACGCACGCG
CGCGTGATTCGAAGACGAGGTCTTGTTACAAGAGCAGATTGTCTTTGTTT
CGTCACCCCGAGATGCACAATTGTTCAACACACACTCATCACCGCGCCCA
G
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12022:983..1783-

>mRNA_H-canaliculatus_F_contig12022.1775.1 ID=mRNA_H-canaliculatus_F_contig12022.1775.1|Name=mRNA_H-canaliculatus_F_contig12022.1775.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=366bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12022:983..1783- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGAAGGAGACGGCAATGCTCTACGGTATTGGGCTGATCCCGCCACC
CTTTTGGCACTCTGCGGGTGCCTCCCGTTGCCTTCGTAGGGAGAACGTCG
CTTTGTTGGTGTGGCGATTATGGAGAAGGAGACGGCAATGCTCTACGGTA
TTGGGCTGATCCCGCCACCCTTTTGGCACTCTGCGGGTGCCTCCCGTTGC
CTTCGTAGGGAGAACGTCGCTTTGTTGGTGTGGCGATTATTGTCTTTGTT
TCGTCACCCCGAGATGCACAATTGTTCAACACACACTCATCACCGCGCCC
AGATTGTCTTTGTTTCGTCACCCCGAGATGCACAATTGTTCAACACACAC
TCATCACCGCGCCCAG
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