mRNA_H-canaliculatus_F_contig12020.1774.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12020.1774.1
Unique NamemRNA_H-canaliculatus_F_contig12020.1774.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 5.750e-75
Identity = 130/171 (76.02%), Postives = 140/171 (81.87%), Query Frame = 1
Query:    1 DVKLGDPVKANQDSPCLKAAVDAIRTQALANGSIIGLDIEWEISAAGAPVNPPATIQLAAGKAGVIFHVLHGQRA--------LVDSLEDDKLTKTGVGIKGDCTRLSDFYGVQVARVVDLRSLAAERKVGVGLRRGLADLCVHLLGVSLPKDPAVRISRWNTAKLSQEQK 489
            DV LG+PVKANQDSPCLKAAVDAIR QA AN  ++ LDIEWEISAAGAP NPPATIQLAAGK  VIFHVLHGQR+        LVD LED KLTKTGVGIKGDCTRL+ FYGV+VA  VDLRSLA ERKV +GLRRGLADLCVHLLG  LPKDP VR+S+WN   LS +QK
Sbjct:  220 DVVLGEPVKANQDSPCLKAAVDAIRMQAEANNGLLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQK 390          
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Match: A0A0L9U4N3_PHAAN (3'-5' exonuclease domain-containing protein n=3 Tax=Vigna TaxID=3913 RepID=A0A0L9U4N3_PHAAN)

HSP 1 Score: 92.4 bits (228), Expect = 4.870e-20
Identity = 52/136 (38.24%), Postives = 77/136 (56.62%), Query Frame = 1
Query:   94 GSIIGLDIEWEISAAGAPVNPPATIQLAAGKAGVIFHVLHG---QRALVDSLEDDKLTKTGVGIKGDCTRLSDFYGVQVARVVDLRSLAAERKVGVG--LRRGLADLCVHLLGVSLPKDPAVRISRWNTAKLSQEQ 486
            G ++GLD+EW  +      NP AT+QL  G A ++F ++H      +L   L+D  +T  GVGI+ D  +L   YG+ VA V DLRSLA  +  G     + GL  LC+H+LGV + K  ++  S W+  +L+ EQ
Sbjct:   69 GLMVGLDVEWRPNTQPNTQNPVATLQLCVGHACLVFQIIHSPFFSHSLDSFLQDPNVTFFGVGIRADAEKLLRDYGLYVANVYDLRSLAEAKLRGYPHLSQAGLKTLCLHVLGVDVEKPQSITRSFWDNTRLTAEQ 204          
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Match: F2EF68_HORVV (Predicted protein n=2 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2EF68_HORVV)

HSP 1 Score: 89.4 bits (220), Expect = 5.300e-19
Identity = 56/133 (42.11%), Postives = 77/133 (57.89%), Query Frame = 1
Query:  100 IIGLDIEWEISAAGAPVNPPATIQLAAGKAGVIFHVLHGQ---RALVDSLEDDKLTKTGVGIKGDCTRLSDFYGVQVARVVDLRSLAAERKVGVGLRR-GLADLCVHLLGVSLPKDPAVRISRWNTAKLSQEQ 486
            I+GLD+EW  S  G   NP A +QL  G+  +IF +LH      AL   L D      GVG++ D  RL+D +G++VA VVDLRSLAA+      LR+ GL D+   ++G +L K   V +  W+  +LSQEQ
Sbjct:   47 IVGLDVEWRPSF-GRAQNPVALLQLCVGRRCLIFQLLHADFIPLALRRFLADPDFRFVGVGVQNDVDRLNDDHGLEVANVVDLRSLAADEMRRPWLRQAGLKDVAGVVMGANLHKPRRVTMGPWDACRLSQEQ 178          
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Match: A0A2N9HCJ7_FAGSY (3'-5' exonuclease domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HCJ7_FAGSY)

HSP 1 Score: 85.1 bits (209), Expect = 2.170e-17
Identity = 51/132 (38.64%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  100 IIGLDIEWEISAAGAPVNPPATIQLAAGKAGVIFHVLHGQR---ALVDSLEDDKLTKTGVGIKGDCTRLSDFYGVQVARVVDLRSLAAERKVGVGLRRGLADLCVHLLGVSLPKDPAVRISRWNTAKLSQEQ 486
            I+GLD+EW  +      NP AT+QL  G+  ++F +++      +L+D L D++ T  GVGI  D  +L + YG++VA VVDLRSLA E         GL  L   +LG+ + K  +V +SRW+   L+ EQ
Sbjct:   59 IVGLDVEWRPNNRHFE-NPAATLQLCVGRRCLVFQLIYASYFPDSLIDFLGDERFTFVGVGIASDVEKLLEDYGLKVANVVDLRSLAVEMGNRDLRNAGLKGLARAVLGMEIHKPRSVTLSRWDREFLTYEQ 189          
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Match: A0A4D6NDC0_VIGUN (Werner syndrome ATP-dependent helicase n=2 Tax=Vigna unguiculata TaxID=3917 RepID=A0A4D6NDC0_VIGUN)

HSP 1 Score: 85.5 bits (210), Expect = 2.190e-17
Identity = 52/136 (38.24%), Postives = 73/136 (53.68%), Query Frame = 1
Query:   94 GSIIGLDIEWEISAAGAPVNPPATIQLAAGKAGVIFHVLHG---QRALVDSLEDDKLTKTGVGIKGDCTRLSDFYGVQVARVVDLRSLAAERKVGVGLRR--GLADLCVHLLGVSLPKDPAVRISRWNTAKLSQEQ 486
            G ++GLDIEW         NP AT+QL  G A ++F ++H      +L   L+D  +T  GVGI+ D  +L   YG+ VA V DLRSLA  +       R  GL  LC+H+LG  + K  ++  S W+   L+ EQ
Sbjct:   70 GLMVGLDIEWRPITQPNTQNPVATLQLCVGNACLVFQIIHAPYFSHSLGSFLQDLNVTFLGVGIRADAEKLLRDYGLHVANVCDLRSLAEVKLWRYPHLRQAGLKTLCLHVLGAEVEKPQSISRSLWDNRCLTAEQ 205          
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.670e-16
Identity = 55/141 (39.01%), Postives = 75/141 (53.19%), Query Frame = 1
Query:   94 GSIIGLDIEWEISAAGAPVNPPATIQLAAGKA-GVIFHVLHG---------QRALVDSLEDDKLTKTGVGIKGDCTRLSDFYGVQVARVVDLRSLAAERKVGVGLRRGLADLCVHLLGVSLPKDPAVRISRWNTAKLSQEQ 486
            G ++G+D EWE    G+      T+QLA       +FH+  G          R+L   L D  +TK GV +KGD +RL   YGV+   +VDLRS A    V +  R  LA +    LG SL K+P+VR SRW+ A+L+Q Q
Sbjct:   87 GHVLGMDCEWEPPFDGSSEGAVCTLQLALPDGTAYLFHLQRGTRRTRPSTFNRSLKVLLNDPTITKVGVAVKGDGSRLQRDYGVETCGMVDLRSYARTCWVDLPCR-SLAGMVATALGKSLSKNPSVRFSRWSQAELTQNQ 226          
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Match: UPI001CB93B92 (Werner Syndrome-like exonuclease n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB93B92)

HSP 1 Score: 73.2 bits (178), Expect = 7.760e-13
Identity = 47/134 (35.07%), Postives = 74/134 (55.22%), Query Frame = 1
Query:  100 IIGLDIEWEISAAGAPV-NPPATIQLAAGKAGVIFHVLHGQ---RALVDSLEDDKLTKTGVGIKGDCTRLSDFYGVQVARVVDLRSLAAERKVGVGLRR-GLADLCVHLLGVSLPKDPAVRISRWNTAKLSQEQ 486
            IIGLDIEW          NP AT+QL  G+  +++ + H      +L   L++   T TGVG++ D  +L++ YG+ VA++ D+R LAA+    V  +  G+  L + +L   + K  +V +SRW+   LS EQ
Sbjct:   58 IIGLDIEWRPDFQNPTSRNPVATLQLCVGRRCLVYQMTHSPFIPNSLKILLKNPNYTFTGVGVQYDVQKLNEDYGIVVAKIADVRELAAQVYGNVEFKNAGIKTLGMLVLRREVEKPKSVTLSRWDDLVLSAEQ 191          
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Match: A0A8B8NFB3_9MYRT (Werner Syndrome-like exonuclease n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8NFB3_9MYRT)

HSP 1 Score: 72.4 bits (176), Expect = 2.240e-12
Identity = 46/132 (34.85%), Postives = 69/132 (52.27%), Query Frame = 1
Query:  103 IGLDIEWEISAAGAPVNPPATIQLAAGKAGVIFHVLHGQ---RALVDSLEDDKLTKTGVGIKGDCTRLSDFYGVQVARVVDLRSLAAERKVGVGLRR-GLADLCVHLLGVSLPKDPAVRISRWNTAKLSQEQ 486
            +G DI+W  S A    +P ATI L  G+  +++ +L  +   R+L  +L D +   TGV I  D  +LS+ YG++V + VDL  LAA       LRR GLA L   L G  L     + + +W+  +L+  Q
Sbjct:   56 VGFDIKWRPSFARGVRHPVATIHLCIGRCCLVYQILRARCLPRSLYLALRDPRFVFTGVRIAPDAAKLSEDYGLEVKKAVDLGKLAARETNRRELRRAGLATLVRELKGRDLKIPREIALGKWDARRLTPRQ 187          
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Match: A0A061DTA6_THECC (Polynucleotidyl transferase, putative n=2 Tax=Theobroma cacao TaxID=3641 RepID=A0A061DTA6_THECC)

HSP 1 Score: 70.9 bits (172), Expect = 4.620e-12
Identity = 50/155 (32.26%), Postives = 78/155 (50.32%), Query Frame = 1
Query:   37 DSPCLKAA-VDAIRTQALANGSIIGLDIEWEISAAGAPVNPPATIQLAAGKAGVI---FHVLHGQRALVDSLEDDKLTKTGVGIKGDCTRLSDFYGVQVARVVDLRSLAAERKVGVGLRR-GLADLCVHLLGVSLPKDPAVRISRWNTAKLSQEQ 486
            D  C+  A V  IR+       I+GLD EW  +     +N  A +QL      +I   F++ +  ++L   L+D  +T  GV ++ D  +L D YG+Q AR+ D+R L   R   +  R+ GL D+   +LG+S+PK   V  S W ++ L   Q
Sbjct:   27 DKACVADAWVCNIRSMYNGQQMIVGLDSEWRPNTTSTLINRTAVLQLCIETKCLILQLFYLDYIPQSLKSFLQDPNVTFVGVEVERDAAKLRDEYGLQCARIADVRELTMNRWPLLFHRKPGLKDIAYQVLGLSMPKPMHVSRSDWQSSVLDCSQ 181          
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Match: A0A5J5BE12_9ASTE (3'-5' exonuclease domain-containing protein n=2 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5BE12_9ASTE)

HSP 1 Score: 69.3 bits (168), Expect = 1.080e-11
Identity = 48/133 (36.09%), Postives = 66/133 (49.62%), Query Frame = 1
Query:  100 IIGLDIEWEISAAGAPV-NPPATIQLAAGKAGVIFHVLHGQ---RALVDSLEDDKLTKTGVGIKGDCTRLSDFYGVQVARVVDLRSLAAERKVGVGLRRGLADLCVHLLGVSLPKDPAVRISRWNTAKLSQEQ 486
            I+GLD+EW  +     + NP AT+QL  G   +IF +LH     + L D L +   T  GV I GD  +L   +G++VA+ VDL SLA E         GL      +LG  + K   VR S W+   L+  Q
Sbjct:   40 IVGLDVEWRPNRIRNSIENPAATLQLCVGHRCLIFQLLHASHFPQLLKDFLGNPNYTFVGVKIDGDVKKLMKDHGLEVAKAVDLGSLAEENGRMELRYAGLKIFAREVLGKEVEKRTPVRWSEWDNVCLTPAQ 172          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE5.750e-7576.023'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A0L9U4N3_PHAAN4.870e-2038.243'-5' exonuclease domain-containing protein n=3 Ta... [more]
F2EF68_HORVV5.300e-1942.11Predicted protein n=2 Tax=Hordeum vulgare subsp. v... [more]
A0A2N9HCJ7_FAGSY2.170e-1738.643'-5' exonuclease domain-containing protein n=2 Ta... [more]
A0A4D6NDC0_VIGUN2.190e-1738.24Werner syndrome ATP-dependent helicase n=2 Tax=Vig... [more]
A0A6H5JRJ6_9PHAE3.670e-1639.013'-5' exonuclease domain-containing protein n=1 Ta... [more]
UPI001CB93B927.760e-1335.07Werner Syndrome-like exonuclease n=1 Tax=Erigeron ... [more]
A0A8B8NFB3_9MYRT2.240e-1234.85Werner Syndrome-like exonuclease n=1 Tax=Rhodamnia... [more]
A0A061DTA6_THECC4.620e-1232.26Polynucleotidyl transferase, putative n=2 Tax=Theo... [more]
A0A5J5BE12_9ASTE1.080e-1136.093'-5' exonuclease domain-containing protein n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12020contigH-canaliculatus_F_contig12020:1825..2343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score95.5
Seed ortholog evalue2.5e-17
Seed eggNOG ortholog981085.XP_010111221.1
KEGG koko:K20777
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:1901360
EggNOG free text desc.Werner Syndrome-like
EggNOG OGs37U7J@33090,3GIS0@35493,4JVWJ@91835,KOG4373@1,KOG4373@2759
EC3.1.11.1
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size495
Cds size495
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928913.8689315-CDS-H-canaliculatus_F_contig12020:1824..20941622928913.8689315-CDS-H-canaliculatus_F_contig12020:1824..2094Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12020 1825..2094 -
1696845610.6879036-CDS-H-canaliculatus_F_contig12020:1824..20941696845610.6879036-CDS-H-canaliculatus_F_contig12020:1824..2094Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12020 1825..2094 -
1622928913.8861403-CDS-H-canaliculatus_F_contig12020:2118..23431622928913.8861403-CDS-H-canaliculatus_F_contig12020:2118..2343Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12020 2119..2343 -
1696845610.6996968-CDS-H-canaliculatus_F_contig12020:2118..23431696845610.6996968-CDS-H-canaliculatus_F_contig12020:2118..2343Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12020 2119..2343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12020.1774.1prot_H-canaliculatus_F_contig12020.1774.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12020 1825..2343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12020.1774.1

>prot_H-canaliculatus_F_contig12020.1774.1 ID=prot_H-canaliculatus_F_contig12020.1774.1|Name=mRNA_H-canaliculatus_F_contig12020.1774.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=165bp
DVKLGDPVKANQDSPCLKAAVDAIRTQALANGSIIGLDIEWEISAAGAPV
NPPATIQLAAGKAGVIFHVLHGQRALVDSLEDDKLTKTGVGIKGDCTRLS
DFYGVQVARVVDLRSLAAERKVGVGLRRGLADLCVHLLGVSLPKDPAVRI
SRWNTAKLSQEQKM*
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mRNA from alignment at H-canaliculatus_F_contig12020:1825..2343-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12020.1774.1 ID=mRNA_H-canaliculatus_F_contig12020.1774.1|Name=mRNA_H-canaliculatus_F_contig12020.1774.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=519bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12020:1825..2343- (Hapterophycus canaliculatus Oshoro5f female)
GACGTAAAGCTTGGAGACCCTGTTAAGGCGAACCAAGACTCGCCGTGTTT GAAAGCGGCCGTGGACGCCATCCGAACGCAAGCCTTGGCGAACGGAAGCA TCATCGGGTTGGACATCGAATGGGAGATATCCGCTGCGGGTGCACCGGTA AATCCGCCTGCCACAATCCAACTAGCCGCCGGCAAGGCGGGTGTGATATT TCATGTCTTGCATGGTCAGCGTGCGGTGCCGGGATAACTGCCCACGGAGC TGGTGGATTCGTTAGAGGATGACAAACTGACGAAGACGGGGGTCGGCATC AAGGGAGACTGCACAAGGTTATCTGACTTCTACGGAGTGCAAGTGGCTAG AGTTGTCGATCTGCGCTCTCTGGCTGCGGAGCGAAAAGTTGGAGTGGGGC TCAGACGGGGGCTAGCGGACTTGTGCGTGCACCTACTTGGCGTGAGCTTG CCCAAGGACCCCGCGGTCAGGATTTCTAGGTGGAACACGGCCAAGTTATC TCAGGAGCAAAAAATGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12020:1825..2343-

>mRNA_H-canaliculatus_F_contig12020.1774.1 ID=mRNA_H-canaliculatus_F_contig12020.1774.1|Name=mRNA_H-canaliculatus_F_contig12020.1774.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=990bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12020:1825..2343- (Hapterophycus canaliculatus Oshoro5f female)
GACGTAAAGCTTGGAGACCCTGTTAAGGCGAACCAAGACTCGCCGTGTTT
GAAAGCGGCCGTGGACGCCATCCGAACGCAAGCCTTGGCGAACGGAAGCA
TCATCGGGTTGGACATCGAATGGGAGATATCCGCTGCGGGTGCACCGGTA
AATCCGCCTGCCACAATCCAACTAGCCGCCGGCAAGGCGGGTGTGATATT
TCATGTCTTGCATGGTCAGCGTGCGGACGTAAAGCTTGGAGACCCTGTTA
AGGCGAACCAAGACTCGCCGTGTTTGAAAGCGGCCGTGGACGCCATCCGA
ACGCAAGCCTTGGCGAACGGAAGCATCATCGGGTTGGACATCGAATGGGA
GATATCCGCTGCGGGTGCACCGGTAAATCCGCCTGCCACAATCCAACTAG
CCGCCGGCAAGGCGGGTGTGATATTTCATGTCTTGCATGGTCAGCGTGCG
CTGGTGGATTCGTTAGAGGATGACAAACTGACGAAGACGGGGGTCGGCAT
CAAGGGAGACTGCACAAGGTTATCTGACTTCTACGGAGTGCAAGTGGCTA
GAGTTGTCGATCTGCGCTCTCTGGCTGCGGAGCGAAAAGTTGGAGTGGGG
CTCAGACGGGGGCTAGCGGACTTGTGCGTGCACCTACTTGGCGTGAGCTT
GCCCAAGGACCCCGCGGTCAGGATTTCTAGGTGGAACACGGCCAAGTTAT
CTCAGGAGCAAAAAATGTGACTGGTGGATTCGTTAGAGGATGACAAACTG
ACGAAGACGGGGGTCGGCATCAAGGGAGACTGCACAAGGTTATCTGACTT
CTACGGAGTGCAAGTGGCTAGAGTTGTCGATCTGCGCTCTCTGGCTGCGG
AGCGAAAAGTTGGAGTGGGGCTCAGACGGGGGCTAGCGGACTTGTGCGTG
CACCTACTTGGCGTGAGCTTGCCCAAGGACCCCGCGGTCAGGATTTCTAG
GTGGAACACGGCCAAGTTATCTCAGGAGCAAAAAATGTGA
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