mRNA_H-canaliculatus_F_contig12009.1766.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12009.1766.1
Unique NamemRNA_H-canaliculatus_F_contig12009.1766.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12009.1766.1 vs. uniprot
Match: A0A6H5K182_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K182_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 5.550e-31
Identity = 101/211 (47.87%), Postives = 113/211 (53.55%), Query Frame = 1 
Query:    1 RATSEAVSSGSPHLRWLSQALIACRASCSSEALS-------SVLAALXXXXAAKGDPGDAGDKDRRGRKAAVWTRRLLEQLLAPSSRRG-SGAGIHRAMRDGGGXXXXXXXGEAEAAGGAARGAEANLVRRLQPESMAALMRLQVESPSPDLGWLVCLALTGSSRDRDGGTHDGGGDGVETEPGVGVGVGKEAAGLLDDEAFFQHFFVRLT 609
            RAT+ AV+SGS HLRWLSQA IACR SCSS AL        S L+         G P D  D   RG  + V  RRLLEQLLAPS RRG +G G+     D          GE        RGA  +LV  L+PES  ALMRLQVESPSP+LGWLVCLA+T  S      +  G   GV  +             LLD E FFQHFF RLT
Sbjct: 1439 RATAAAVASGSRHLRWLSQAQIACRGSCSSSALXXXXXXLLSRLSTAKTLAPVSGSP-DLLDNGLRGGASDVLARRLLEQLLAPSPRRGLAGGGVASETED--------AVGE--------RGA--SLVAGLRPESTVALMRLQVESPSPELGWLVCLAITAKS------SSSGILGGVTADTXXXXXXXXXQEDLLDAEIFFQHFFGRLT 1624
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BLAST of mRNA_H-canaliculatus_F_contig12009.1766.1 vs. uniprot
Match: D7G8A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A9_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.870e-30
Identity = 102/212 (48.11%), Postives = 113/212 (53.30%), Query Frame = 1 
Query:    1 RATSEAVSSGSPHLRWLSQALIACRASCSSEALSSVLAALXXXXA-------AKGDPGDAGDKDRRGRKAAVWTRRLLEQLLAPSSRRGSGAGIHRAMRDGGGXXXXXXXGEAEAAGGAARGAEANLVRRLQPESMAALMRLQVESPSPDLGWLVCLALTG-SSRDRDGGTHDGGGDGVETEPGVGVGVGKEA-AGLLDDEAFFQHFFVRLT 609
            RAT+ AV+SGS HL+WLSQA IACR SCSS ALS VLAAL    +       A G P D  D   RG  + V  RRLLEQLLAPS RRG   G                 G A           A+LV  L PES  AL+RLQVESPSP+LG LVCLA+T  SSRD             +   GV       A A LLD E FFQHFF +LT
Sbjct: 1061 RATASAVASGSRHLQWLSQAQIACRGSCSSAALSGVLAALLSRLSTTKALAPASGSP-DLLDTRLRGGASDVLARRLLEQLLAPSPRRGLAGG-----------------GVAXXXXXVVEERGASLVAGLGPESTVALVRLQVESPSPELGCLVCLAITARSSRDNS-----------DVVGGVAADTAAAAQADLLDAEIFFQHFFGKLT 1243
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12009.1766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K182_9PHAE5.550e-3147.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8A9_ECTSI1.870e-3048.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12009contigH-canaliculatus_F_contig12009:176..1487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue1.1e-27
Seed eggNOG ortholog2880.D7G8A9
Preferred nameURB1
KEGG rclassRC00435
KEGG koko:K01626,ko:K07766,ko:K14861
KEGG ReactionR01826
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024
KEGG ModuleM00022
GOsGO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0070013
EggNOG free text desc.maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG1791@1,KOG1791@2759
EC2.5.1.54,3.6.1.52
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons3
Model size615
Cds size612
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12009.1766.1prot_H-canaliculatus_F_contig12009.1766.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12009 176..1485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928912.7361135-CDS-H-canaliculatus_F_contig12009:175..3161622928912.7361135-CDS-H-canaliculatus_F_contig12009:175..316Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12009 176..316 +
1696845610.0707269-CDS-H-canaliculatus_F_contig12009:175..3161696845610.0707269-CDS-H-canaliculatus_F_contig12009:175..316Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12009 176..316 +
1622928912.7509718-CDS-H-canaliculatus_F_contig12009:588..8551622928912.7509718-CDS-H-canaliculatus_F_contig12009:588..855Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12009 589..855 +
1696845610.082004-CDS-H-canaliculatus_F_contig12009:588..8551696845610.082004-CDS-H-canaliculatus_F_contig12009:588..855Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12009 589..855 +
1622928912.7648628-CDS-H-canaliculatus_F_contig12009:1281..14851622928912.7648628-CDS-H-canaliculatus_F_contig12009:1281..1485Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12009 1282..1485 +
1696845610.0956378-CDS-H-canaliculatus_F_contig12009:1281..14851696845610.0956378-CDS-H-canaliculatus_F_contig12009:1281..1485Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12009 1282..1485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12009.1766.1

>prot_H-canaliculatus_F_contig12009.1766.1 ID=prot_H-canaliculatus_F_contig12009.1766.1|Name=mRNA_H-canaliculatus_F_contig12009.1766.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=204bp
RATSEAVSSGSPHLRWLSQALIACRASCSSEALSSVLAALLARLAAKGDP
GDAGDKDRRGRKAAVWTRRLLEQLLAPSSRRGSGAGIHRAMRDGGGGTGT
GFGGEAEAAGGAARGAEANLVRRLQPESMAALMRLQVESPSPDLGWLVCL
ALTGSSRDRDGGTHDGGGDGVETEPGVGVGVGKEAAGLLDDEAFFQHFFV
RLTR
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mRNA from alignment at H-canaliculatus_F_contig12009:176..1487+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12009.1766.1 ID=mRNA_H-canaliculatus_F_contig12009.1766.1|Name=mRNA_H-canaliculatus_F_contig12009.1766.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1312bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12009:176..1487+ (Hapterophycus canaliculatus Oshoro5f female)
AGGGCCACCTCGGAGGCCGTGTCCTCCGGGTCCCCGCACCTACGGTGGCT
CTCTCAAGCGCTGATCGCGTGCCGGGCCTCTTGCTCCTCGGAGGCTTTGT
CCAGCGTGCTTGCGGCGCTCCTGGCGAGGCTCGCCGCGAAGGTACAGGTA
CAGCAGGATGCGACCAAGCGTACAGTTAGTCGGCAGTACAGCGCGAGCGA
GCGAGCGAGCGAAGGTGCTGATCGCGGTTGGTCTAGTATAAAAGTGCGGC
ACCGGTCGGAGTGCCCGGGGGCGCGAGAGGCCAGAGTTTGGAGCCCCGGC
CGCGTGTTGCGCGGGGCGAACAACTCACAGAACACGCCCTCCCCCCTCCC
CCCCAAAAAAAAATCCGAAAAACAACAAAAAAAAAATCTAATCGCCGCTC
GAGAAATCAGCAGGGCGACCCGGGCGATGCAGGGGACAAAGACAGACGCG
GAAGGAAGGCTGCCGTTTGGACGAGGCGCTTGCTGGAGCAGCTTTTGGCG
CCCTCGTCTCGGAGGGGCTCCGGGGCCGGCATCCACCGCGCGATGCGCGA
CGGGGGCGGCGGAACCGGCACAGGATTTGGTGGTGAGGCGGAAGCGGCGG
GAGGGGCTGCGAGGGGCGCAGAAGCAAATCTCGTGCGGAGGCTGCAGCCG
GAATCGATGGCGGCGTTGATGCGGCTTCAGGTGCGATGCCACTGACGATG
CCGCTTCGAGGGGCAGGGGGGGCCGGGGCTGTGGGTAGATACAGGAGCAG
TGCGTTGCCTTACCTGGGAGGGTGTGCGGGTGCGTGCGGGTTGGATGCTG
CTGGCTTTTGATCTGTCGTGTTGCTTGCGAAGCTGACGGTGGCGATGATC
CTCGCCGCGGCCCTGCAGGTACCGAACGGCAAATCTGATCGTCAGGCTCC
ACGGTTCATTCACCCCTGATTGTTTGCTTGCAAGCGTGACAAGATCGAGA
GGATCTGATTGAGAGGACGGACCGTTGTCCAAAACATACTGCTGTTCCTC
GATGCGCTCGCGATCCACCCCTGCCGGCCCTCCGCTCGTCCTCGATTTCT
CACGTGTCGCACTGCTGCCAACTGCTTTTCAACGTTCCACCATCCTCGCC
CCTCAGGTAGAATCGCCCTCGCCCGACCTTGGGTGGCTGGTTTGCCTCGC
CCTCACCGGTAGCTCCAGGGATAGGGATGGCGGCACTCACGACGGCGGCG
GGGACGGCGTCGAGACCGAGCCCGGGGTCGGGGTCGGAGTCGGGAAGGAG
GCGGCGGGTCTGCTAGACGACGAGGCGTTTTTCCAGCACTTTTTCGTGAG
GCTCACGCGGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12009:176..1487+

>mRNA_H-canaliculatus_F_contig12009.1766.1 ID=mRNA_H-canaliculatus_F_contig12009.1766.1|Name=mRNA_H-canaliculatus_F_contig12009.1766.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1224bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12009:176..1487+ (Hapterophycus canaliculatus Oshoro5f female)
AGGGCCACCTCGGAGGCCGTGTCCTCCGGGTCCCCGCACCTACGGTGGCT
CTCTCAAGCGCTGATCGCGTGCCGGGCCTCTTGCTCCTCGGAGGCTTTGT
CCAGCGTGCTTGCGGCGCTCCTGGCGAGGCTCGCCGCGAAGAGGGCCACC
TCGGAGGCCGTGTCCTCCGGGTCCCCGCACCTACGGTGGCTCTCTCAAGC
GCTGATCGCGTGCCGGGCCTCTTGCTCCTCGGAGGCTTTGTCCAGCGTGC
TTGCGGCGCTCCTGGCGAGGCTCGCCGCGAAGGGCGACCCGGGCGATGCA
GGGGACAAAGACAGACGCGGAAGGAAGGCTGCCGTTTGGACGAGGCGCTT
GCTGGAGCAGCTTTTGGCGCCCTCGTCTCGGAGGGGCTCCGGGGCCGGCA
TCCACCGCGCGATGCGCGACGGGGGCGGCGGAACCGGCACAGGATTTGGT
GGTGAGGCGGAAGCGGCGGGAGGGGCTGCGAGGGGCGCAGAAGCAAATCT
CGTGCGGAGGCTGCAGCCGGAATCGATGGCGGCGTTGATGCGGCTTCAGG
GCGACCCGGGCGATGCAGGGGACAAAGACAGACGCGGAAGGAAGGCTGCC
GTTTGGACGAGGCGCTTGCTGGAGCAGCTTTTGGCGCCCTCGTCTCGGAG
GGGCTCCGGGGCCGGCATCCACCGCGCGATGCGCGACGGGGGCGGCGGAA
CCGGCACAGGATTTGGTGGTGAGGCGGAAGCGGCGGGAGGGGCTGCGAGG
GGCGCAGAAGCAAATCTCGTGCGGAGGCTGCAGCCGGAATCGATGGCGGC
GTTGATGCGGCTTCAGGTAGAATCGCCCTCGCCCGACCTTGGGTGGCTGG
TTTGCCTCGCCCTCACCGGTAGCTCCAGGGATAGGGATGGCGGCACTCAC
GACGGCGGCGGGGACGGCGTCGAGACCGAGCCCGGGGTCGGGGTCGGAGT
CGGGAAGGAGGCGGCGGGTCTGCTAGACGACGAGGCGTTTTTCCAGCACT
TTTTCGTGAGGCTCACGCGGGTAGAATCGCCCTCGCCCGACCTTGGGTGG
CTGGTTTGCCTCGCCCTCACCGGTAGCTCCAGGGATAGGGATGGCGGCAC
TCACGACGGCGGCGGGGACGGCGTCGAGACCGAGCCCGGGGTCGGGGTCG
GAGTCGGGAAGGAGGCGGCGGGTCTGCTAGACGACGAGGCGTTTTTCCAG
CACTTTTTCGTGAGGCTCACGCGG
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