mRNA_H-canaliculatus_F_contig12007.1764.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12007.1764.1
Unique NamemRNA_H-canaliculatus_F_contig12007.1764.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12007.1764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12007contigH-canaliculatus_F_contig12007:215..859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size645
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12007.1764.1prot_H-canaliculatus_F_contig12007.1764.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12007 446..853 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928912.47355-UTR-H-canaliculatus_F_contig12007:214..4451622928912.47355-UTR-H-canaliculatus_F_contig12007:214..445Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12007 215..445 +
1696845610.0046093-UTR-H-canaliculatus_F_contig12007:214..4451696845610.0046093-UTR-H-canaliculatus_F_contig12007:214..445Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12007 215..445 +
1622928912.627979-UTR-H-canaliculatus_F_contig12007:853..8591622928912.627979-UTR-H-canaliculatus_F_contig12007:853..859Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12007 854..859 +
1696845610.024023-UTR-H-canaliculatus_F_contig12007:853..8591696845610.024023-UTR-H-canaliculatus_F_contig12007:853..859Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12007 854..859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928912.6161244-CDS-H-canaliculatus_F_contig12007:445..8531622928912.6161244-CDS-H-canaliculatus_F_contig12007:445..853Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12007 446..853 +
1696845610.0139985-CDS-H-canaliculatus_F_contig12007:445..8531696845610.0139985-CDS-H-canaliculatus_F_contig12007:445..853Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12007 446..853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12007.1764.1

>prot_H-canaliculatus_F_contig12007.1764.1 ID=prot_H-canaliculatus_F_contig12007.1764.1|Name=mRNA_H-canaliculatus_F_contig12007.1764.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=136bp
MALLRLSGCRRIIMADLASAMRACAKIFPERAAVVSVQGHISIGVVRTRR
LLFQGGTWSWLRVGCRVCVRVRCRCVHPPNISYGSGGEDPTHANPWSPSP
VLFLPLFLSSRAPQALVAPCPRPVRFCPLGRQPAF*
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mRNA from alignment at H-canaliculatus_F_contig12007:215..859+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12007.1764.1 ID=mRNA_H-canaliculatus_F_contig12007.1764.1|Name=mRNA_H-canaliculatus_F_contig12007.1764.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=645bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12007:215..859+ (Hapterophycus canaliculatus Oshoro5f female)
CACCCGCAGCTGACGGCCAAGATTCAGGCGACGATCCACCGCACAGACAC
GACCGACGCTCAGAAGGTGTGTTTGCAGATGGATCCAATGTCCGTTTTGT
TCCCTTCTGTCTTTCGTGAGGATCGATACACCGTCGTGAGGATCGATACA
CCTGTTTGGTGCCAGTAGAGCTGGCCGTGCGTCTGTCTGCCTACACGGAA
TGCCACAAAACTTAAGGCGGAAGGCGTGCCCATGGCCCTCCTTCGACTTT
CGGGGTGTCGCCGGATCATCATGGCAGACTTGGCGTCAGCGATGCGTGCT
TGTGCCAAAATTTTTCCAGAGCGTGCTGCTGTTGTGAGCGTACAGGGGCA
CATTTCCATCGGGGTAGTGAGGACTCGCCGCTTGTTGTTCCAGGGGGGCA
CGTGGTCATGGTTACGTGTAGGGTGTAGGGTGTGCGTGCGGGTTCGTTGT
CGTTGTGTCCACCCTCCGAACATATCATATGGATCTGGTGGCGAAGATCC
GACACACGCCAACCCTTGGAGTCCCAGTCCTGTCCTGTTCCTGCCATTGT
TCTTGTCGTCGAGAGCACCACAAGCACTCGTCGCACCATGCCCTCGGCCG
GTGCGGTTCTGTCCTCTGGGAAGACAACCTGCGTTTTGAGTCGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12007:215..859+

>mRNA_H-canaliculatus_F_contig12007.1764.1 ID=mRNA_H-canaliculatus_F_contig12007.1764.1|Name=mRNA_H-canaliculatus_F_contig12007.1764.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=816bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12007:215..859+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCCTCCTTCGACTTTCGGGGTGTCGCCGGATCATCATGGCAGACTT
GGCGTCAGCGATGCGTGCTTGTGCCAAAATTTTTCCAGAGCGTGCTGCTG
TTGTGAGCGTACAGGGGCACATTTCCATCGGGGTAGTGAGGACTCGCCGC
TTGTTGTTCCAGGGGGGCACGTGGTCATGGTTACGTGTAGGGTGTAGGGT
GTGCGTGCGGGTTCGTTGTCGTTGTGTCCACCCTCCGAACATATCATATG
GATCTGGTGGCGAAGATCCGACACACGCCAACCCTTGGAGTCCCAGTCCT
GTCCTGTTCCTGCCATTGTTCTTGTCGTCGAGAGCACCACAAGCACTCGT
CGCACCATGCCCTCGGCCGGTGCGGTTCTGTCCTCTGGGAAGACAACCTG
CGTTTTGAATGGCCCTCCTTCGACTTTCGGGGTGTCGCCGGATCATCATG
GCAGACTTGGCGTCAGCGATGCGTGCTTGTGCCAAAATTTTTCCAGAGCG
TGCTGCTGTTGTGAGCGTACAGGGGCACATTTCCATCGGGGTAGTGAGGA
CTCGCCGCTTGTTGTTCCAGGGGGGCACGTGGTCATGGTTACGTGTAGGG
TGTAGGGTGTGCGTGCGGGTTCGTTGTCGTTGTGTCCACCCTCCGAACAT
ATCATATGGATCTGGTGGCGAAGATCCGACACACGCCAACCCTTGGAGTC
CCAGTCCTGTCCTGTTCCTGCCATTGTTCTTGTCGTCGAGAGCACCACAA
GCACTCGTCGCACCATGCCCTCGGCCGGTGCGGTTCTGTCCTCTGGGAAG
ACAACCTGCGTTTTGA
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