mRNA_H-canaliculatus_F_contig12003.1762.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12003.1762.1
Unique NamemRNA_H-canaliculatus_F_contig12003.1762.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12003.1762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12003contigH-canaliculatus_F_contig12003:3237..3792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size556
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12003.1762.1prot_H-canaliculatus_F_contig12003.1762.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12003 3288..3629 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928912.3396966-UTR-H-canaliculatus_F_contig12003:3236..32871622928912.3396966-UTR-H-canaliculatus_F_contig12003:3236..3287Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12003 3237..3287 +
1696845609.9239373-UTR-H-canaliculatus_F_contig12003:3236..32871696845609.9239373-UTR-H-canaliculatus_F_contig12003:3236..3287Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12003 3237..3287 +
1622928912.36534-UTR-H-canaliculatus_F_contig12003:3629..37921622928912.36534-UTR-H-canaliculatus_F_contig12003:3629..3792Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12003 3630..3792 +
1696845609.9574797-UTR-H-canaliculatus_F_contig12003:3629..37921696845609.9574797-UTR-H-canaliculatus_F_contig12003:3629..3792Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12003 3630..3792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928912.3544447-CDS-H-canaliculatus_F_contig12003:3287..36291622928912.3544447-CDS-H-canaliculatus_F_contig12003:3287..3629Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12003 3288..3629 +
1696845609.9469068-CDS-H-canaliculatus_F_contig12003:3287..36291696845609.9469068-CDS-H-canaliculatus_F_contig12003:3287..3629Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12003 3288..3629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12003.1762.1

>prot_H-canaliculatus_F_contig12003.1762.1 ID=prot_H-canaliculatus_F_contig12003.1762.1|Name=mRNA_H-canaliculatus_F_contig12003.1762.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=114bp
MGVAVALAVLAKGGWLTTVCFRLFRSSRCCGEGSARPRHLHGTAVSGAAE
VKSPTFMFGWSRCNHLRCGETWLTAGSCRHRELAWHPMAATPEGHVPSPR
VHSWYSCGAAYPG*
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mRNA from alignment at H-canaliculatus_F_contig12003:3237..3792+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12003.1762.1 ID=mRNA_H-canaliculatus_F_contig12003.1762.1|Name=mRNA_H-canaliculatus_F_contig12003.1762.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=556bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12003:3237..3792+ (Hapterophycus canaliculatus Oshoro5f female)
CCACCGCTGCCCCCGTCCAAGCTGGCTCCATGGTATCCCGCGGCGGCAGC
CATGGGCGTCGCCGTCGCGCTGGCGGTTCTTGCGAAAGGTGGCTGGCTGA
CGACTGTGTGTTTTCGCTTGTTTCGTTCTTCACGCTGCTGTGGGGAAGGT
TCCGCACGCCCGCGGCACCTCCATGGGACTGCAGTGAGCGGAGCGGCAGA
GGTCAAATCGCCAACTTTCATGTTTGGATGGAGTCGCTGCAACCATTTGC
GGTGTGGTGAAACGTGGCTTACTGCTGGGTCTTGTAGGCACCGCGAACTA
GCGTGGCACCCGATGGCGGCCACACCCGAAGGCCATGTGCCGAGCCCCCG
TGTTCACTCGTGGTACTCGTGTGGAGCTGCCTACCCAGGTTGAAATTAGA
CTAACTCCAATCGAACAAAATGAAATGTAGACGCGTCTCATCAAAGCGTC
TCCACCCGAGGGTACCATCACTTCGCGAGATATGACCGCTCGCGTCTTTG
CTTGACACGATTCGACGGTTGTTTGCCTCAGCCCCCCCCCCCCCCCCCCC
CCGCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12003:3237..3792+

>mRNA_H-canaliculatus_F_contig12003.1762.1 ID=mRNA_H-canaliculatus_F_contig12003.1762.1|Name=mRNA_H-canaliculatus_F_contig12003.1762.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=684bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12003:3237..3792+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCGTCGCCGTCGCGCTGGCGGTTCTTGCGAAAGGTGGCTGGCTGAC
GACTGTGTGTTTTCGCTTGTTTCGTTCTTCACGCTGCTGTGGGGAAGGTT
CCGCACGCCCGCGGCACCTCCATGGGACTGCAGTGAGCGGAGCGGCAGAG
GTCAAATCGCCAACTTTCATGTTTGGATGGAGTCGCTGCAACCATTTGCG
GTGTGGTGAAACGTGGCTTACTGCTGGGTCTTGTAGGCACCGCGAACTAG
CGTGGCACCCGATGGCGGCCACACCCGAAGGCCATGTGCCGAGCCCCCGT
GTTCACTCGTGGTACTCGTGTGGAGCTGCCTACCCAGGTTGAATGGGCGT
CGCCGTCGCGCTGGCGGTTCTTGCGAAAGGTGGCTGGCTGACGACTGTGT
GTTTTCGCTTGTTTCGTTCTTCACGCTGCTGTGGGGAAGGTTCCGCACGC
CCGCGGCACCTCCATGGGACTGCAGTGAGCGGAGCGGCAGAGGTCAAATC
GCCAACTTTCATGTTTGGATGGAGTCGCTGCAACCATTTGCGGTGTGGTG
AAACGTGGCTTACTGCTGGGTCTTGTAGGCACCGCGAACTAGCGTGGCAC
CCGATGGCGGCCACACCCGAAGGCCATGTGCCGAGCCCCCGTGTTCACTC
GTGGTACTCGTGTGGAGCTGCCTACCCAGGTTGA
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