mRNA_H-canaliculatus_F_contig1200.1757.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1200.1757.1
Unique NamemRNA_H-canaliculatus_F_contig1200.1757.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1200.1757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1200contigH-canaliculatus_F_contig1200:9224..11280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size901
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1200.1757.1prot_H-canaliculatus_F_contig1200.1757.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1200 10478..11116 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928911.424077-UTR-H-canaliculatus_F_contig1200:9223..93111622928911.424077-UTR-H-canaliculatus_F_contig1200:9223..9311Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1200 9224..9311 +
1696845609.6018708-UTR-H-canaliculatus_F_contig1200:9223..93111696845609.6018708-UTR-H-canaliculatus_F_contig1200:9223..9311Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1200 9224..9311 +
1622928911.444088-UTR-H-canaliculatus_F_contig1200:10467..104771622928911.444088-UTR-H-canaliculatus_F_contig1200:10467..10477Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1200 10468..10477 +
1696845609.6105635-UTR-H-canaliculatus_F_contig1200:10467..104771696845609.6105635-UTR-H-canaliculatus_F_contig1200:10467..10477Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1200 10468..10477 +
1622928911.4814148-UTR-H-canaliculatus_F_contig1200:11116..112801622928911.4814148-UTR-H-canaliculatus_F_contig1200:11116..11280Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1200 11117..11280 +
1696845609.62798-UTR-H-canaliculatus_F_contig1200:11116..112801696845609.62798-UTR-H-canaliculatus_F_contig1200:11116..11280Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1200 11117..11280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928911.4628887-CDS-H-canaliculatus_F_contig1200:10477..111161622928911.4628887-CDS-H-canaliculatus_F_contig1200:10477..11116Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1200 10478..11116 +
1696845609.6190307-CDS-H-canaliculatus_F_contig1200:10477..111161696845609.6190307-CDS-H-canaliculatus_F_contig1200:10477..11116Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1200 10478..11116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1200.1757.1

>prot_H-canaliculatus_F_contig1200.1757.1 ID=prot_H-canaliculatus_F_contig1200.1757.1|Name=mRNA_H-canaliculatus_F_contig1200.1757.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=213bp
MFRGRAAAAQRADGTPSCGAREKRFGAPSSGVRAPAYRFNHWQQQRRLLD
VRKKGLRFSDKNDAPWRHPFGGAARATSSTSATKVHDHHDHHQRQERSTK
RQAIIAADFVRVVRALLWLSPPPRQAASAASETAAELTGMVRIAEVDAIA
TAAVVAATAQQNEEGGLTEDLGDRNQAKRWEPRTALDFSGHSFGKDIQVR
RCGSHHLPAAAF*
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mRNA from alignment at H-canaliculatus_F_contig1200:9224..11280+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1200.1757.1 ID=mRNA_H-canaliculatus_F_contig1200.1757.1|Name=mRNA_H-canaliculatus_F_contig1200.1757.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2057bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1200:9224..11280+ (Hapterophycus canaliculatus Oshoro5f female)
CCGGTCAACCGGCAGGACTGACAAGACCAAGAGGTACCCAACGTCGTATC
CTCGTATCCAAGAGAAGCCTTGGAACGATTGACAAGAGGTGAGAAGCGAG
GGCTATTTCTCCTCGGGATACCCAAACTTTTCGGGTGGTCCGTCATGATC
GCTCACCCTGCGGAGTTGAATCTTGGCGCCAAGGCGACCGGCGTTGAAGC
TGTAGCATAGCTAGTGTTGAGCTTGAACACGAGTAAATATGACTCGTACG
AGCTTCTCGGTAATAGCTTTGATCAGATCGTCCTTCTTACTCCACTACTG
TGTCTGGGAATAAAATATTCTCTCATCTCTGTTGAAGTACGTACATCCAA
ACAGCAGGGAGCCGAACGGTTCACCCAGCTTTCCAGCTTCGAATCCGCCT
GTAATCGAAAGAAACGCGTTTGGCGGGGCCGGTGTTACAAAACTAGCTGC
ACAGGGTCAGCTAGCCCTACCCACTGTTGTGGAAGCCTGTTCTTACCTTT
TCACATGTAACAGGAAGGGGGTGCGAGGGTTAAACCGTCGGACAAGGCCA
CGGCTTGTAGACATCAATACTCAAGATTCGTTGGGTTCGGTACGTAAAAC
TATTTTTTTAGGACCGACCGCCCGAGACGTGGGACTGCTGTCGAAAGCGC
TTGTCGAAACTCTGGTCTGGTATTGTTTTGGAACGACCGACCTTCTGCAT
GATCTATCCAGCTTGCCTTGGGTGATCAGGTGCTTCCCATAACACAAGTA
GGTTGGACTTTCAAACTGCCGTATTCTGTTATTTCTGCGCAATTGCTGAG
TACCCGCATTGGCTGAATCTGAAACGCACATGGTTTCGTTTATCAGGATA
GCAGCAAGGCATGTACGACACGTACACATGCCGTCGCACAAATGGGCCAC
GGTGCTACACCTTCCGTTCGAATTTCTGTTCCTTGACAACGGTCGGTCCA
ACTTTTCCGCCAATAACACCTTAAAGCTCTCCCAAGAGGCGGTCCTGGAC
TCCACAGCAACAGATTGATTTCGCCAATTCACGCGTCGATTGTTTCTTTT
TTCATTTTTTCCACGTTGTCTCTTGTCCCTCATGTTCAGCGATACCTACC
AACAGCGGCAACAGTAGTTCTTGATGCGGCATGTGTGGCACTTGCACTTC
TTTCCTTCGCTCCGGAAAATACGCCCCTTCCGCCAGCCACCGCGTCATCA
CGACTGCTCACCCCCTCGTATCGTTTGCCCTCATGGCACGACAGCTACCA
TCACATGTTTCGCGGAAGGGCAGCAGCAGCACAACGAGCCGATGGCACGC
CAAGCTGCGGTGCCCGAGAAAAGCGTTTCGGCGCACCATCGTCTGGCGTC
CGCGCGCCAGCTTACCGCTTCAACCATTGGCAACAACAACGACGACTACT
TGACGTGCGGAAGAAGGGACTGCGCTTCAGCGATAAAAATGATGCACCAT
GGAGGCACCCCTTCGGCGGCGCGGCGAGAGCGACCTCGAGCACTTCAGCG
ACCAAAGTCCACGACCACCACGACCACCACCAGCGCCAAGAACGGTCGAC
GAAAAGACAAGCGATAATCGCCGCTGACTTCGTGCGGGTGGTGCGAGCGC
TGCTTTGGCTTTCTCCGCCTCCTCGTCAAGCTGCTTCAGCGGCGTCCGAG
ACGGCAGCAGAGCTGACGGGGATGGTCAGGATTGCAGAGGTGGATGCGAT
AGCCACGGCCGCAGTAGTAGCGGCGACCGCACAGCAGAACGAAGAGGGAG
GCTTGACTGAAGATTTGGGAGATCGGAATCAAGCGAAAAGATGGGAGCCA
CGGACCGCATTGGATTTCAGCGGACATTCCTTCGGGAAGGACATACAGGT
ACGACGATGTGGCTCTCATCACCTACCTGCGGCTGCTTTTTAGTTGCGCC
TAAACTTTCAGCTGCAGGCAGACTTCCGCCTGGAGCTCGTGATCACACTA
TATTTCCGACCCGCTCTCGATTCCTACCGAGTGCTTCGCTGCTCGGTACC
CTCCACGTTGTGGGCTGGCGCGGTAGAGGGAGAGAAAGAGGGATGGATGG
ATGGATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1200:9224..11280+

>mRNA_H-canaliculatus_F_contig1200.1757.1 ID=mRNA_H-canaliculatus_F_contig1200.1757.1|Name=mRNA_H-canaliculatus_F_contig1200.1757.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1278bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1200:9224..11280+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTTCGCGGAAGGGCAGCAGCAGCACAACGAGCCGATGGCACGCCAAG
CTGCGGTGCCCGAGAAAAGCGTTTCGGCGCACCATCGTCTGGCGTCCGCG
CGCCAGCTTACCGCTTCAACCATTGGCAACAACAACGACGACTACTTGAC
GTGCGGAAGAAGGGACTGCGCTTCAGCGATAAAAATGATGCACCATGGAG
GCACCCCTTCGGCGGCGCGGCGAGAGCGACCTCGAGCACTTCAGCGACCA
AAGTCCACGACCACCACGACCACCACCAGCGCCAAGAACGGTCGACGAAA
AGACAAGCGATAATCGCCGCTGACTTCGTGCGGGTGGTGCGAGCGCTGCT
TTGGCTTTCTCCGCCTCCTCGTCAAGCTGCTTCAGCGGCGTCCGAGACGG
CAGCAGAGCTGACGGGGATGGTCAGGATTGCAGAGGTGGATGCGATAGCC
ACGGCCGCAGTAGTAGCGGCGACCGCACAGCAGAACGAAGAGGGAGGCTT
GACTGAAGATTTGGGAGATCGGAATCAAGCGAAAAGATGGGAGCCACGGA
CCGCATTGGATTTCAGCGGACATTCCTTCGGGAAGGACATACAGGTACGA
CGATGTGGCTCTCATCACCTACCTGCGGCTGCTTTTTAGATGTTTCGCGG
AAGGGCAGCAGCAGCACAACGAGCCGATGGCACGCCAAGCTGCGGTGCCC
GAGAAAAGCGTTTCGGCGCACCATCGTCTGGCGTCCGCGCGCCAGCTTAC
CGCTTCAACCATTGGCAACAACAACGACGACTACTTGACGTGCGGAAGAA
GGGACTGCGCTTCAGCGATAAAAATGATGCACCATGGAGGCACCCCTTCG
GCGGCGCGGCGAGAGCGACCTCGAGCACTTCAGCGACCAAAGTCCACGAC
CACCACGACCACCACCAGCGCCAAGAACGGTCGACGAAAAGACAAGCGAT
AATCGCCGCTGACTTCGTGCGGGTGGTGCGAGCGCTGCTTTGGCTTTCTC
CGCCTCCTCGTCAAGCTGCTTCAGCGGCGTCCGAGACGGCAGCAGAGCTG
ACGGGGATGGTCAGGATTGCAGAGGTGGATGCGATAGCCACGGCCGCAGT
AGTAGCGGCGACCGCACAGCAGAACGAAGAGGGAGGCTTGACTGAAGATT
TGGGAGATCGGAATCAAGCGAAAAGATGGGAGCCACGGACCGCATTGGAT
TTCAGCGGACATTCCTTCGGGAAGGACATACAGGTACGACGATGTGGCTC
TCATCACCTACCTGCGGCTGCTTTTTAG
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