mRNA_H-canaliculatus_F_contig11997.1743.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11997.1743.1
Unique NamemRNA_H-canaliculatus_F_contig11997.1743.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11997.1743.1 vs. uniprot
Match: D8LLS2_ECTSI (Fructose-bisphosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLS2_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 3.880e-28
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 QDLEQLMGSIQYACKTIANLVSRAGISDLTGLQGDGGSVNVQGEEQKKLDVISNDVLK 174
            QDLEQLMGSIQYACKTIANLVSRAGISDLTGLQGDGGSVNVQGEEQKKLDVISNDVLK
Sbjct:   81 QDLEQLMGSIQYACKTIANLVSRAGISDLTGLQGDGGSVNVQGEEQKKLDVISNDVLK 138
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BLAST of mRNA_H-canaliculatus_F_contig11997.1743.1 vs. uniprot
Match: A0A7S2RUE4_9STRA (Fructose-bisphosphatase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RUE4_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 8.730e-23
Identity = 47/58 (81.03%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 QDLEQLMGSIQYACKTIANLVSRAGISDLTGLQGDGGSVNVQGEEQKKLDVISNDVLK 174
            QDLE LM SIQ ACKTI++LV+R+GI+DLTG+QG GGSVN+QGEEQKKLDVISNDVLK
Sbjct:   40 QDLENLMASIQMACKTISSLVARSGITDLTGMQGGGGSVNIQGEEQKKLDVISNDVLK 97
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BLAST of mRNA_H-canaliculatus_F_contig11997.1743.1 vs. uniprot
Match: A0A835YUK2_9STRA (Fructose-bisphosphatase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUK2_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 7.250e-22
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 QDLEQLMGSIQYACKTIANLVSRAGISDLTGLQGDGGSVNVQGEEQKKLDVISNDVLK 174
            Q+LE LM SIQ ACK IANLVSRAGI+DLTG+QG GGSVN+QGEEQKKLDVISND+LK
Sbjct:   80 QELEALMSSIQVACKMIANLVSRAGITDLTGMQGGGGSVNIQGEEQKKLDVISNDILK 137
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BLAST of mRNA_H-canaliculatus_F_contig11997.1743.1 vs. uniprot
Match: A0A7S1XRP8_9STRA (Fructose-bisphosphatase n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRP8_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.520e-21
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 QDLEQLMGSIQYACKTIANLVSRAGISDLTGLQGDGGSVNVQGEEQKKLDVISNDVLK 174
            Q+LE LM SIQ ACK IANLV+RAGISDLTG++G GGSVNVQGEEQKKLDVISNDV+K
Sbjct:   83 QELESLMSSIQIACKQIANLVARAGISDLTGMEGGGGSVNVQGEEQKKLDVISNDVMK 140
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BLAST of mRNA_H-canaliculatus_F_contig11997.1743.1 vs. uniprot
Match: W7SYZ9_9STRA (Fructose-bisphosphatase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SYZ9_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.140e-20
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 QDLEQLMGSIQYACKTIANLVSRAGISDLTGLQGDGGSVNVQGEEQKKLDVISNDVLK 174
            QDLE L+ SIQ ACKTIANLV RAGI+DLTGLQG    +NVQGEEQKKLDVISNDVLK
Sbjct:   68 QDLEVLLSSIQVACKTIANLVCRAGINDLTGLQG---GINVQGEEQKKLDVISNDVLK 122
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BLAST of mRNA_H-canaliculatus_F_contig11997.1743.1 vs. uniprot
Match: A0A7S2V7Q3_9STRA (Fructose-bisphosphatase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7Q3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.240e-19
Identity = 44/58 (75.86%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 QDLEQLMGSIQYACKTIANLVSRAGISDLTGLQGDGGSVNVQGEEQKKLDVISNDVLK 174
            Q++E +M SIQ ACK I++LVSRAGI+DLTG+Q  GGS+NVQGEEQKKLDVISNDVLK
Sbjct:   68 QEMESMMASIQMACKKISSLVSRAGITDLTGMQAGGGSINVQGEEQKKLDVISNDVLK 125
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BLAST of mRNA_H-canaliculatus_F_contig11997.1743.1 vs. uniprot
Match: A0A7S0ZJV8_9RHOD (Fructose-bisphosphatase n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZJV8_9RHOD)

HSP 1 Score: 87.8 bits (216), Expect = 4.880e-19
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 QDLEQLMGSIQYACKTIANLVSRAGISDLTGLQGDGGSVNVQGEEQKKLDVISNDVLK 174
            +D+E LM +IQ ACK I +LV+RAGISDLTGL+  GGSVNVQGEEQKKLDV+SNDVLK
Sbjct:   79 KDMENLMAAIQLACKKIGSLVARAGISDLTGLESGGGSVNVQGEEQKKLDVLSNDVLK 136
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BLAST of mRNA_H-canaliculatus_F_contig11997.1743.1 vs. uniprot
Match: A0A4D9CTB7_9STRA (Fructose-bisphosphatase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTB7_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 5.070e-19
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 QDLEQLMGSIQYACKTIANLVSRAGISDLTGLQGDGGSVNVQGEEQKKLDVISNDVLK 174
            QDLE L+ SIQ ACKTIANLV RAGI+DLTGLQG    +NVQGEEQKKLDVISNDVLK
Sbjct:  109 QDLEVLLSSIQVACKTIANLVCRAGINDLTGLQG---GINVQGEEQKKLDVISNDVLK 163
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BLAST of mRNA_H-canaliculatus_F_contig11997.1743.1 vs. uniprot
Match: Q00GK8_KARBR (Fructose-bisphosphatase (Fragment) n=1 Tax=Karenia brevis TaxID=156230 RepID=Q00GK8_KARBR)

HSP 1 Score: 83.6 bits (205), Expect = 1.980e-18
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 QDLEQLMGSIQYACKTIANLVSRAGISDLTGLQGDGGSVNVQGEEQKKLDVISNDVLK 174
            Q++E LM SIQ ACK IA+LV+R+GI DLTGL+  GGSVNVQGEEQKKLDVISN V+K
Sbjct:  101 QEMEGLMTSIQMACKQIASLVARSGIQDLTGLESGGGSVNVQGEEQKKLDVISNTVMK 158
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BLAST of mRNA_H-canaliculatus_F_contig11997.1743.1 vs. uniprot
Match: A0A7S1DGE7_HEMAN (Fructose-bisphosphatase n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S1DGE7_HEMAN)

HSP 1 Score: 86.3 bits (212), Expect = 2.150e-18
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 QDLEQLMGSIQYACKTIANLVSRAGISDLTGLQGDGGSVNVQGEEQKKLDVISNDVLK 174
            +DLE LM  IQ ACKTIANLV RA IS + G++G GGSVNVQGEEQKKLDVI+NDVLK
Sbjct:   92 RDLESLMSGIQQACKTIANLVDRATISGMVGMEGGGGSVNVQGEEQKKLDVITNDVLK 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11997.1743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLS2_ECTSI3.880e-28100.00Fructose-bisphosphatase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2RUE4_9STRA8.730e-2381.03Fructose-bisphosphatase (Fragment) n=1 Tax=Rhizoch... [more]
A0A835YUK2_9STRA7.250e-2282.76Fructose-bisphosphatase n=2 Tax=Tribonema minus Ta... [more]
A0A7S1XRP8_9STRA1.520e-2182.76Fructose-bisphosphatase n=3 Tax=Phaeomonas parva T... [more]
W7SYZ9_9STRA1.140e-2081.03Fructose-bisphosphatase n=1 Tax=Nannochloropsis ga... [more]
A0A7S2V7Q3_9STRA1.240e-1975.86Fructose-bisphosphatase n=1 Tax=Fibrocapsa japonic... [more]
A0A7S0ZJV8_9RHOD4.880e-1975.86Fructose-bisphosphatase n=1 Tax=Timspurckia oligop... [more]
A0A4D9CTB7_9STRA5.070e-1981.03Fructose-bisphosphatase n=1 Tax=Nannochloropsis sa... [more]
Q00GK8_KARBR1.980e-1874.14Fructose-bisphosphatase (Fragment) n=1 Tax=Karenia... [more]
A0A7S1DGE7_HEMAN2.150e-1875.86Fructose-bisphosphatase n=2 Tax=Hemiselmis TaxID=7... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11997contigH-canaliculatus_F_contig11997:2916..3778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue4.8e-20
Seed eggNOG ortholog2880.D8LLS2
Preferred nameFBP
KEGG rclassRC00017
KEGG koko:K03841
KEGG ReactionR00762,R04780
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG ModuleM00003,M00165,M00167,M00344
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006091,GO:0006094,GO:0006793,GO:0006796,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009266,GO:0009311,GO:0009312,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009719,GO:0009725,GO:0009735,GO:0009767,GO:0009773,GO:0009987,GO:0010033,GO:0010319,GO:0015979,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019318,GO:0019319,GO:0019637,GO:0019684,GO:0022900,GO:0030388,GO:0031967,GO:0031975,GO:0034637,GO:0042132,GO:0042221,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046351,GO:0046364,GO:0048046,GO:0050308,GO:0050896,GO:0055114,GO:0071704,GO:1901135,GO:1901576
EggNOG free text desc.fructose 1,6-bisphosphate 1-phosphatase activity
EggNOG OGsCOG0158@1,KOG1458@2759
EC3.1.3.11
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionFructose-bisphosphatase
Ec32 orthologEc-04_004710.1
Exons2
Model size174
Cds size156
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11997.1743.1prot_H-canaliculatus_F_contig11997.1743.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11997 2934..3778 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928908.0828035-UTR-H-canaliculatus_F_contig11997:2915..29331622928908.0828035-UTR-H-canaliculatus_F_contig11997:2915..2933Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11997 2916..2933 +
1696845607.817942-UTR-H-canaliculatus_F_contig11997:2915..29331696845607.817942-UTR-H-canaliculatus_F_contig11997:2915..2933Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11997 2916..2933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928908.0952287-CDS-H-canaliculatus_F_contig11997:2933..30141622928908.0952287-CDS-H-canaliculatus_F_contig11997:2933..3014Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11997 2934..3014 +
1696845607.8293998-CDS-H-canaliculatus_F_contig11997:2933..30141696845607.8293998-CDS-H-canaliculatus_F_contig11997:2933..3014Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11997 2934..3014 +
1622928908.1057866-CDS-H-canaliculatus_F_contig11997:3703..37781622928908.1057866-CDS-H-canaliculatus_F_contig11997:3703..3778Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11997 3704..3778 +
1696845607.8372016-CDS-H-canaliculatus_F_contig11997:3703..37781696845607.8372016-CDS-H-canaliculatus_F_contig11997:3703..3778Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11997 3704..3778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11997.1743.1

>prot_H-canaliculatus_F_contig11997.1743.1 ID=prot_H-canaliculatus_F_contig11997.1743.1|Name=mRNA_H-canaliculatus_F_contig11997.1743.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=52bp
MGSIQYACKTIANLVSRAGISDLTGLQGDGGSVNVQGEEQKKLDVISNDV
LK
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mRNA from alignment at H-canaliculatus_F_contig11997:2916..3778+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11997.1743.1 ID=mRNA_H-canaliculatus_F_contig11997.1743.1|Name=mRNA_H-canaliculatus_F_contig11997.1743.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=863bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11997:2916..3778+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGACCTCGAGCAACTGATGGGGTCCATCCAGTACGCGTGCAAGACCAT
CGCCAACTTGGTCAGCCGCGCGGGGATCTCGGACCTCACGGGCCTCCAGG
TATCCGACCGCGGGAGGGCAGAAAAGCGTGCGGCGCGTCTCCAGACAGAA
CGCGGCTCGCGAAGTTGCAGCGTTTACGTGTGCCGTTTGTCTTGCGCGGC
GCACACGTTTGTTTGACGGCAGCGGTAGTAGCAGCAGCAGCAGCAGCAGT
ACTGGAGGTGGAAGGCCAGTTGCTCAGCTCGTGCGGAGCATCGCGTTTTT
TCTGTGGTGACGCCTACGAAGAGTTTTTCTTTATCCAGATTAGTGTGAGC
TGTAGGTGGTGCGCGTTGTTGTTCGGCCCGTATCCACGTGAAGTTCGCCC
AACAGCAACAGCACCAGCAGCGTACGACGAAGCAAGCAGAGGCGAGATCT
ATCCGAGGAGGCGTCTGTAGCAAGCATCCTGTCGCCGTCGTCCTCGTCGT
TGCCTTATTATGCCTTCGTTCGGTAGTAGACCGGAGCCCTCTCCCGACTC
TCTCACGCGCGTGCCAGCAAACTTCCCGCGTGCCATGATCTCCCCGCCCG
CTGCTGTTTTCGGCAGCGGGTCGTTTTCAGCCAGCCGAATAACCGCGATT
TATTTCTCCCTTTTTTTCTGCCCGTGCGGGGGATCTTCTGCGCGCCCGAC
TCCGTCTTGGCCGGTAATGCGGCGGCGCGCTTTGTCTTGCCGCGCCAACG
GCGAAAAACAAAACAAAAAAACGACCACGGACGAAAAGGGGGACGGAGGG
TCGGTGAACGTCCAGGGGGAGGAGCAGAAGAAGTTGGACGTCATCTCCAA
CGACGTGCTCAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11997:2916..3778+

>mRNA_H-canaliculatus_F_contig11997.1743.1 ID=mRNA_H-canaliculatus_F_contig11997.1743.1|Name=mRNA_H-canaliculatus_F_contig11997.1743.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=312bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11997:2916..3778+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGTCCATCCAGTACGCGTGCAAGACCATCGCCAACTTGGTCAGCCG
CGCGGGGATCTCGGACCTCACGGGCCTCCAGATGGGGTCCATCCAGTACG
CGTGCAAGACCATCGCCAACTTGGTCAGCCGCGCGGGGATCTCGGACCTC
ACGGGCCTCCAGGGGGACGGAGGGTCGGTGAACGTCCAGGGGGAGGAGCA
GAAGAAGTTGGACGTCATCTCCAACGACGTGCTCAAGGGGGACGGAGGGT
CGGTGAACGTCCAGGGGGAGGAGCAGAAGAAGTTGGACGTCATCTCCAAC
GACGTGCTCAAG
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