mRNA_H-canaliculatus_F_contig11992.1740.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11992.1740.1
Unique NamemRNA_H-canaliculatus_F_contig11992.1740.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11992.1740.1 vs. uniprot
Match: D7G8X5_ECTSI (Similar to Fe65 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8X5_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 5.380e-78
Identity = 311/451 (68.96%), Postives = 331/451 (73.39%), Query Frame = 3 
Query:  471 PALSAEGCALCAGGAPSFSLTLWFEGSPWVAVWDDTQKAFYYHNTATDETSWNVPVAPDLAVPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTESPEADPPAPSGDTSAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAD----------VVDLRPSTLVWWSDAGDVWNGVSLSGLLGGYGPRRYRNLGGGYYMTTLELGPEWATAAVASLGQGAIDPVAAARVDWVSCTASAPGYGLFLRFSGEDDELKLFDVPDEFFDDPPXXXXXXXXXXXXXXXAENAEMEXXXXXXXXXXEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------GKGSGGKSGGVGSIGKKRKGAADLLAKWRAVASTAGEEAEKEAEKQAKMERWKAQAAAQDPNNSNFTPIGKKRR 1766
            PA S +  A     A         + S WV VWDD  +AFYYH+T TDETSW+ P          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        + SPE    +P+ ++    XXXXXXXXX                      AA           VVDLRP TLVWWSDAGDVWNGVSLSGLLGGYGPRRYRNLGGGYYMTTLE GPEWATAAVA+LGQG  DPVAAAR+DWVSCTASAPGYGLFLRFSGEDDE KLFDVPDE+FD   XXXXXXXXXXXXXXX       XXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         G  + GKSGG  SIGKKRKGAA+L+ KW+AVASTAGEEAEKEAEKQ KMERWKA+AAA DP+N NFTPIGK+RR
Sbjct:  790 PAASTDAAAKEGDSASIPESLSRIDNSTWVPVWDDNHQAFYYHDTVTDETSWD-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPGGAQQRSPSPEPSTASPNAESXXXXXXXXXXXXXVTADAPKAHSATEEDVATAATPAASAAAAEAPTTSVVDLRPCTLVWWSDAGDVWNGVSLSGLLGGYGPRRYRNLGGGYYMTTLERGPEWATAAVAALGQGVADPVAAARMDWVSCTASAPGYGLFLRFSGEDDEQKLFDVPDEYFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGSSATGKSGG--SIGKKRKGAANLIDKWKAVASTAGEEAEKEAEKQEKMERWKARAAAMDPDNPNFTPIGKRRR 1237
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11992.1740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8X5_ECTSI5.380e-7868.96Similar to Fe65 n=1 Tax=Ectocarpus siliculosus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11992contigH-canaliculatus_F_contig11992:73..2963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2651
Cds size816
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11992.1740.1prot_H-canaliculatus_F_contig11992.1740.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11992 1266..2081 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928907.3272302-UTR-H-canaliculatus_F_contig11992:72..6221622928907.3272302-UTR-H-canaliculatus_F_contig11992:72..622Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11992 73..622 +
1696845607.6960878-UTR-H-canaliculatus_F_contig11992:72..6221696845607.6960878-UTR-H-canaliculatus_F_contig11992:72..622Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11992 73..622 +
1622928907.3389122-UTR-H-canaliculatus_F_contig11992:862..12651622928907.3389122-UTR-H-canaliculatus_F_contig11992:862..1265Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11992 863..1265 +
1696845607.7038047-UTR-H-canaliculatus_F_contig11992:862..12651696845607.7038047-UTR-H-canaliculatus_F_contig11992:862..1265Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11992 863..1265 +
1622928907.364879-UTR-H-canaliculatus_F_contig11992:2081..29631622928907.364879-UTR-H-canaliculatus_F_contig11992:2081..2963Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11992 2082..2963 +
1696845607.7334065-UTR-H-canaliculatus_F_contig11992:2081..29631696845607.7334065-UTR-H-canaliculatus_F_contig11992:2081..2963Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11992 2082..2963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928907.3530824-CDS-H-canaliculatus_F_contig11992:1265..20811622928907.3530824-CDS-H-canaliculatus_F_contig11992:1265..2081Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11992 1266..2081 +
1696845607.720369-CDS-H-canaliculatus_F_contig11992:1265..20811696845607.720369-CDS-H-canaliculatus_F_contig11992:1265..2081Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11992 1266..2081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11992.1740.1

>prot_H-canaliculatus_F_contig11992.1740.1 ID=prot_H-canaliculatus_F_contig11992.1740.1|Name=mRNA_H-canaliculatus_F_contig11992.1740.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=272bp
MATAAATAADVVDLRPSTLVWWSDAGDVWNGVSLSGLLGGYGPRRYRNLG
GGYYMTTLELGPEWATAAVASLGQGAIDPVAAARVDWVSCTASAPGYGLF
LRFSGEDDELKLFDVPDEFFDDPPPDPAAAAALAEAEAAAENAEMEAAAA
AAVAATEEAEAAGSEAAATLVTAETGAAPAAEKAKAATTTAATKKRKGKG
SGGKSGGVGSIGKKRKGAADLLAKWRAVASTAGEEAEKEAEKQAKMERWK
AQAAAQDPNNSNFTPIGKKRR*
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mRNA from alignment at H-canaliculatus_F_contig11992:73..2963+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11992.1740.1 ID=mRNA_H-canaliculatus_F_contig11992.1740.1|Name=mRNA_H-canaliculatus_F_contig11992.1740.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2891bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11992:73..2963+ (Hapterophycus canaliculatus Oshoro5f female)
CCCCCTCCGCACGTGCCCACGCTCGTCATCTCTCGCACTTTTTTTGCTGA
AGCGGGCTTTTGAACCAGGGCGCCGGGGATGGGTAGCTGGCCGCAGATAC
GTACATCAGACTGCCTTTTGTCAGGCAGGAGGCAACGGCCTGGAAATCGT
GGTGTGCTCAAGAGGCGACCAGCGTTTGTAGTTCACTCTACCCGAGAGCG
AGAAAGCGCACAAAGCAGCACGTTGAAGACGGTTCGGTTGGGTTTGTGGG
TCTACGCACCAAAAGCCCGCGCGAAGAGGTTGACGACGAAACCTTACCGC
ACGACTAAGACAGGAGAGGGATACCGGACGCCCTGCTTGGAGCTCTTCTT
GGGGTGGCTCTGTGCTGTCTGAACGAGCTGAAGCGCGTGACGAGTTCTGT
TGTGGGCGACGCCCCTCGCCTTTCTTTTATCAGCAGCGCTCTCCCCTGAC
GTCCCGTATAAGCCCTCTGTCCCGCTCTCTCAGCAGAAGGCTGCGCGCTT
TGCGCAGGGGGAGCGCCATCTTTCTCTCTCACTCTTTGGTTCGAGGGCAG
GTGAGCCACATGCCTGCCATCAAGCAGGCCAAAGAGAAACTTTCGAGCGA
GCGCTCTGCTCCAGCTTCTCCACAGACTCCCCGATGTTCGATTTTTGACT
TGCTCGCCCCCCCCGTCCCCCTCCCCCGTCCGCCTTCTCTCTTGTTCCGC
CTTCGCCGTCTGACTACCGTTGCTACGTTTCCCTACTTGACGAAAATCGA
CGAAAAAAACGTCTCTTCGCGGTTTGCTGGTACCTCGCAGCCCCTGGGTG
GCCGTATGGGACGACACTCAAAAGGCGTTCTACTACCACAACACAGCTAC
CGACGAAACTTCTTGGAATGTTCCCGTGGCCCCTGATCTAGCGGTGCCCG
CCGCTGCAGCCACCACGGCCACCGCGGACGGGTCTACCCCTCCGGCAGCC
TCGTCTTCGTCGTCCTCCAGGAAGCAGAACAAGCACAAGAAAAAGAAGAC
CTCTTCGGCAGACGCGGCCGCTGCGCCTGATAAGGCCGCAGCGAAATCGC
CGCCCCCTCCCAACACCGAGAGTCCCGAGGCCGACCCTCCCGCCCCCTCC
GGCGACACATCGGCGGCGGAGGCCCGGCGACGGTCTCCTTCGCCCGTAAC
CGCGGCCGCAGCTGCAAGCACGATCTCCACCGAGACAGAGACGATGGCAA
CGGCAGCGGCAACGGCAGCGGATGTCGTAGACCTGCGCCCGAGCACACTG
GTGTGGTGGTCGGACGCCGGCGACGTCTGGAACGGTGTGTCGCTGTCGGG
CCTCCTCGGGGGCTACGGCCCTCGCCGGTACCGCAACCTCGGCGGCGGCT
ACTACATGACGACGCTGGAGCTCGGCCCGGAGTGGGCGACGGCGGCCGTG
GCGTCCCTGGGCCAGGGCGCCATCGACCCCGTGGCGGCGGCGAGGGTGGA
CTGGGTAAGCTGCACGGCGTCCGCGCCCGGGTACGGCCTGTTCCTGCGCT
TTTCGGGGGAGGACGACGAGCTCAAGCTTTTCGACGTGCCCGACGAGTTC
TTCGACGACCCTCCGCCGGACCCGGCGGCCGCCGCCGCCCTGGCGGAGGC
GGAAGCCGCGGCCGAGAACGCGGAGATGGAGGCCGCGGCGGCGGCGGCCG
TGGCGGCCACGGAGGAGGCGGAGGCGGCCGGGAGCGAGGCGGCGGCGACT
TTGGTGACGGCGGAAACGGGGGCGGCGCCGGCCGCCGAGAAGGCGAAGGC
GGCGACGACGACCGCCGCGACGAAGAAAAGGAAGGGCAAGGGGTCGGGCG
GAAAGTCCGGCGGGGTCGGGTCGATAGGAAAGAAGCGCAAGGGCGCGGCG
GATCTGCTGGCGAAGTGGAGAGCGGTGGCGTCGACCGCCGGGGAGGAGGC
GGAGAAGGAGGCCGAGAAACAGGCGAAGATGGAGCGGTGGAAGGCTCAGG
CGGCCGCTCAGGATCCCAACAACTCCAACTTCACGCCCATCGGCAAGAAG
AGGAGATGATACGCTGCGTTTCGCGTGTTTGTTGCTCGTAGTCGTGATGC
TCGTGGGGCAATCTCGAACTTCGAACCTGCTGCTGTAAAGCTCATGCACA
AGTATCGTGAGACAGTAGGTTCGCCGTGGTCTGGCGGCTGGAGTTGGCTG
GACTAGAATGTAGGGGGTTCTGACGAAGGGCTCTCAGGCTTCGACGTGGT
CAACGGCGTAGTAGTTGTTGTCGGAGGCGGAGGACACGCAGCCCGAGAAA
TTTCGTCCCGGTCCGGTGACTAGGAGATGGAGCGATCGTGTGAGAAGAAA
GAAGTCTTGTTTCGCTGCAGCGCTGGAGGCGGGTGTTGTACCATTGTGAC
AGCAGTGCTCGTAGTGTCCATCTTGATTGAATATGGTAGTTGGTCGGTAG
GGAGGCGCGTCCAGCTTTCCGTAGGGCGGACGAAGGCGAAATAACTAAAT
GCACATGTATGCACATGTAAGGCTGATTGATAGCTCGGGTGATGCATGCT
GCCAAAGCCAAAGGTTGGAATGTGCGTCGAGTAGACACTACATCGTTCTA
CGGCAGTCAGCTGGCTGTTTTCGGCAGGGTTTGGGACCTTCCAAAGGCGA
ACTTGCAGGTAAGTTTGTCCGGTGTCTGGGGCTGCCGGAGCTGATACAAT
CGTGGACTTTTTCATGAAGAAGACACAAAGAGCGTGCGCCGAGCGCGGAG
ATGTGCTCCTTGTATCTACGTCACAATATAAGCTCTTTATTGCGTCTTAC
GAAGAGGGAGAACATCGACAATCAATGTGAACCGGAGGATGCGAATGGAG
CGGGTACCCACATGATATGACAGAATATTGTCTTGGGTCTAGTCGGTTTT
CCGCGGGTCGTGAGCTGCGAGCTGTGTAATGGCACCGATCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11992:73..2963+

>mRNA_H-canaliculatus_F_contig11992.1740.1 ID=mRNA_H-canaliculatus_F_contig11992.1740.1|Name=mRNA_H-canaliculatus_F_contig11992.1740.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1632bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11992:73..2963+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCAACGGCAGCGGCAACGGCAGCGGATGTCGTAGACCTGCGCCCGAG
CACACTGGTGTGGTGGTCGGACGCCGGCGACGTCTGGAACGGTGTGTCGC
TGTCGGGCCTCCTCGGGGGCTACGGCCCTCGCCGGTACCGCAACCTCGGC
GGCGGCTACTACATGACGACGCTGGAGCTCGGCCCGGAGTGGGCGACGGC
GGCCGTGGCGTCCCTGGGCCAGGGCGCCATCGACCCCGTGGCGGCGGCGA
GGGTGGACTGGGTAAGCTGCACGGCGTCCGCGCCCGGGTACGGCCTGTTC
CTGCGCTTTTCGGGGGAGGACGACGAGCTCAAGCTTTTCGACGTGCCCGA
CGAGTTCTTCGACGACCCTCCGCCGGACCCGGCGGCCGCCGCCGCCCTGG
CGGAGGCGGAAGCCGCGGCCGAGAACGCGGAGATGGAGGCCGCGGCGGCG
GCGGCCGTGGCGGCCACGGAGGAGGCGGAGGCGGCCGGGAGCGAGGCGGC
GGCGACTTTGGTGACGGCGGAAACGGGGGCGGCGCCGGCCGCCGAGAAGG
CGAAGGCGGCGACGACGACCGCCGCGACGAAGAAAAGGAAGGGCAAGGGG
TCGGGCGGAAAGTCCGGCGGGGTCGGGTCGATAGGAAAGAAGCGCAAGGG
CGCGGCGGATCTGCTGGCGAAGTGGAGAGCGGTGGCGTCGACCGCCGGGG
AGGAGGCGGAGAAGGAGGCCGAGAAACAGGCGAAGATGGAGCGGTGGAAG
GCTCAGGCGGCCGCTCAGGATCCCAACAACTCCAACTTCACGCCCATCGG
CAAGAAGAGGAGATGAATGGCAACGGCAGCGGCAACGGCAGCGGATGTCG
TAGACCTGCGCCCGAGCACACTGGTGTGGTGGTCGGACGCCGGCGACGTC
TGGAACGGTGTGTCGCTGTCGGGCCTCCTCGGGGGCTACGGCCCTCGCCG
GTACCGCAACCTCGGCGGCGGCTACTACATGACGACGCTGGAGCTCGGCC
CGGAGTGGGCGACGGCGGCCGTGGCGTCCCTGGGCCAGGGCGCCATCGAC
CCCGTGGCGGCGGCGAGGGTGGACTGGGTAAGCTGCACGGCGTCCGCGCC
CGGGTACGGCCTGTTCCTGCGCTTTTCGGGGGAGGACGACGAGCTCAAGC
TTTTCGACGTGCCCGACGAGTTCTTCGACGACCCTCCGCCGGACCCGGCG
GCCGCCGCCGCCCTGGCGGAGGCGGAAGCCGCGGCCGAGAACGCGGAGAT
GGAGGCCGCGGCGGCGGCGGCCGTGGCGGCCACGGAGGAGGCGGAGGCGG
CCGGGAGCGAGGCGGCGGCGACTTTGGTGACGGCGGAAACGGGGGCGGCG
CCGGCCGCCGAGAAGGCGAAGGCGGCGACGACGACCGCCGCGACGAAGAA
AAGGAAGGGCAAGGGGTCGGGCGGAAAGTCCGGCGGGGTCGGGTCGATAG
GAAAGAAGCGCAAGGGCGCGGCGGATCTGCTGGCGAAGTGGAGAGCGGTG
GCGTCGACCGCCGGGGAGGAGGCGGAGAAGGAGGCCGAGAAACAGGCGAA
GATGGAGCGGTGGAAGGCTCAGGCGGCCGCTCAGGATCCCAACAACTCCA
ACTTCACGCCCATCGGCAAGAAGAGGAGATGA
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