mRNA_H-canaliculatus_F_contig1199.1737.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1199.1737.1 vs. uniprot
Match: A0A6H5J8V2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8V2_9PHAE) HSP 1 Score: 339 bits (869), Expect = 3.430e-94 Identity = 217/444 (48.87%), Postives = 254/444 (57.21%), Query Frame = 1
Query: 1969 MSLDVRLNKAFEQGDVVTVESIYREAGQTPGANAERIRRLISK--------AREARETMPRSVQMPXXXXXXXXXXXXXXXXXXXXXXXAAAIQGPARFEMFCPNNIAGQVVGRGGLTVNRLMMESGAQIVLKTYADRTGHDLVISGSPNAVQAARRLVEDLYRWLGCEPTMLPPPLPAR---------RAREAAARARLLSPNVPPEGMMGHPGRGRT-AMAGPXXXPLAG----AGVTLLRRAPPAQPAIAG-------LEGAGSGTAELPDLLRAAQCEHHLDRFRREQLDGEVLLEMERRDFGRMGVTEAEQQRILSVLGQAGGD----------------------------GSVDGXXXXXXXXXXXXXXXXXXXSDGLDPDHPDTCKICMDATVDILFLPCRHQCTCARCGVGFVGKPCILCRQRVERAQRVIKLGR 3129
MSL+VRL KA E+G+ + V++I+ EA QTPGA+ +++++ K RE ++ + ++ Q P AAA Q P ++EMFCPN IAGQV+GRGG TVNRLM ES A+IVLK YAD+TGHD+VI+GSP A ARRLVED YR G EPT LPP R A RARL P +P E M+GH GRGRT A+AGP AG +G P AQP + G ELP LLRAA+CEHHL+RF R+QLDGEVLLEMERRDF RMGVTEAEQ RILS L AG G+ G X SDGLDPDHPDTCKICMDA V ILFLPC HQCTC RCG GFVGKPCI+CRQ+V RAQ VI+L R
Sbjct: 635 MSLEVRLRKAIERGNALAVQAIHDEADQTPGADMKKMKKKCKKWLNKKEGEMREEQQRLLQANQPPPNPALGLRQAGPGFGVPTPPVAAAAAAQRPTQYEMFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKPYADKTGHDVVITGSPQAT--ARRLVEDFYRSKGIEPTHLPPXXXXXXXXXXXXXGRPGGVAPRARLPDPMMPTEAMIGHLGRGRTMAVAGPAAAAAAGMRAPSGAIPQGARPVAQPVVYGGGXXXXXXXXVDVSGGELPQLLRAARCEHHLERFLRDQLDGEVLLEMERRDFDRMGVTEAEQSRILSALKHAGEGXXXXXXXXXXXXXGRRENLAQRVVTVVRGTSGGVATPFEVEDDDVDEDXD--SDGLDPDHPDTCKICMDALVGILFLPCAHQCTCVRCGSGFVGKPCIICRQKVTRAQPVIRLRR 1074
BLAST of mRNA_H-canaliculatus_F_contig1199.1737.1 vs. uniprot
Match: D7FX21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX21_ECTSI) HSP 1 Score: 293 bits (751), Expect = 5.460e-79 Identity = 199/391 (50.90%), Postives = 246/391 (62.92%), Query Frame = 1
Query: 1969 MSLDVRLNKAFEQGDVVTVESIYREAGQTPGANAERIRR-----LISKAREARETMPRSVQMPXXXXXXXXXXXXXXXXXXXXXXXAAAIQGPARFEMFCPNNIAGQVVGRGGLTVNRLMMESGAQIVLKTYADRTGHDLVISGSPNAVQAARRLVEDLYRWLGCEPTMLPPPLPARRAREA-AARARLLSPNVPPEGMMGHPGRGRTAMAGPXXXPLAGAGVTLLRRAPPAQPAIAGLEGAGSGTAELPDLLRAAQCEHHLDRFRREQLDGEVLLEMERRDFGRMGVTEAEQQRILSVLGQAGGDGSVDGXXXXXXXXXXXXXXXXXXXSDGLDPDHPDTCKICMDATVDILFLPCRHQCTCARCGVGFVGKPCILCRQRVERAQRVIKL 3123
MSL+VRL KA + G+ + V+SIY EA QTPGA+ ++I++ L KA E ++ S P XXXXXXXXXXX Q P + +MFCPNNIA Q++G+ G TVN+LM +S A+IV+K Y DR+G+D++I+G+PNAV+ A+RLVE+ YR GC+P+ LPPP A AR+A ARAR P GPXXX ++ +GA G EL LLR A CEHHL+RFR +QLDGEVLL M+RRDF RMGVTE EQ RIL+ L +GG XXXXXXX SDGLDPDHPDTCKIC+DA VDILFLPC HQCTC+RCG + GKPCILCR+ V++ QRVIKL
Sbjct: 683 MSLEVRLKKAIDSGNTLAVQSIYDEADQTPGASMKKIKKKCQRYLNKKAGEDQKLQQASQPAPVRGAXXXXXXXXXXXA-----------QRPTQHDMFCPNNIAPQLIGKQGQTVNKLMKDSRAKIVVKPYPDRSGNDVIITGTPNAVKTAKRLVEEFYRSKGCQPSALPPPSSAVAARKAEGARARPAQP----------------VTGGPXXXXXXXXXXVVVE------------DGAWGG--ELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDFERMGVTEGEQIRILNALKGSGGX----------------XXXXXXXDSDGLDPDHPDTCKICLDALVDILFLPCAHQCTCSRCGSAYEGKPCILCRRVVDKVQRVIKL 1016
BLAST of mRNA_H-canaliculatus_F_contig1199.1737.1 vs. uniprot
Match: D7FX18_ECTSI (KH domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX18_ECTSI) HSP 1 Score: 262 bits (669), Expect = 4.980e-69 Identity = 193/408 (47.30%), Postives = 223/408 (54.66%), Query Frame = 1
Query: 1969 MSLDVRLNKAFEQGDVVTVESIYREAGQTPGANAERIRR-----LISKAREARETMPRSVQMPXXXXXXXXXXXXXXXXXXXXXXXAAAIQGPARFEMFCPNNIAGQVVGRGGLTVNRLMMESGAQIVLKTYADRTGHDLVISGSPNAVQAARRLVEDLYRWLGCEPTMLPPPLPAR-----------RAREAAARARLLSPNVPPEGMMGHPGRGRTAMAGPXXXPLAGAGVTLLRRA------PPAQPAIAGLEGAG------------SGTAELPDLLRAAQCEHHLDRFRREQLDGEVLLEMERRDFGRMGVTEAEQQRILSVLGQAGGDGS----------------------------VDGXXXXXXXXXXXXXXXXXXXSDGLDPDHPDTCKICMDATVDI 3006
MSL+VRL KA E+G+ + V++I+ EA QTPGA+ ++I++ L K E RE R +Q AA Q P +EMFCPN IAGQV+GRGG TVNRLM ES A+IVLKTYAD+TGHD+VI+GSP AV RRLVED YR G EPT+L PP R A RARL P +P E M+GH GRGRT MAG P A G+ A P AQ G SG ELP LLRAA+CEHHL+RF+R+QLDGEVLLEMERR+F RMGVTEAEQ RI+S L AG DG V G XXXXXXSDGLDPDHPDTCKICMDA V +
Sbjct: 493 MSLEVRLKKAIERGNALAVQAIHDEADQTPGADMKKIKKKCKKWLNKKEGEMREEQQRLLQANQPPPNPALGLRQAGPGFGVPTPPMAA-QRPTEYEMFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKTYADKTGHDVVITGSPQAVLTGRRLVEDFYRSKGIEPTLLQPPSXXXXXXXXXXXXXGRPGGVAPRARLPDPMMPTEAMIGHLGRGRT-MAG--AGPAAAVGMRAPSGAIPQGARPVAQXXXXXXMFGGXXXXXXXXXVDVSGV-ELPQLLRAARCEHHLERFKRDQLDGEVLLEMERREFDRMGVTEAEQGRIMSALKHAG-DGXXXXXXXXXXXXXXXXXXRENSAQRVAAVVRGASGVMATPVEVEDXXXXXXSDGLDPDHPDTCKICMDALVGL 894
BLAST of mRNA_H-canaliculatus_F_contig1199.1737.1 vs. uniprot
Match: A0A6H5JKP4_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKP4_9PHAE) HSP 1 Score: 209 bits (533), Expect = 3.650e-56 Identity = 146/367 (39.78%), Postives = 182/367 (49.59%), Query Frame = 1
Query: 2218 AIQGPARFEMFCPNNIAGQVVGRGGLTVNRLMMESGAQIVLKTYADRTGHDLVISGSPNAVQAAR---------------------------------------------------------------RLVEDLYRWLGCEPTMLPPPLPARRAREAA--ARARLLSPNVPPEGMMGHPGRGRTAMAGPXXXPLAGAGVTLLRRAPPAQPAIAGLEGAGSGTAELPDLLRAAQCEHHLDRFRREQLDGEVLLEMERRDFGRMGVTEAEQQRILSVLGQAGGDGSVDGXXXXXXXXXXXXXXXXXXXSDGLDPDHPDTCKICMDATVDILFLPCRHQCTCARCGVGFVGKPCILCRQRVERAQRVIKL 3123
A+ P+ + NIA Q++G+ G TV++LM ES A+IV+K Y DR+G+D+VI+G+PNAV+ ++ R+ E+ YR GC+PT LPPP A A A ARAR P + G XXX ++ +GA G EL LLR A CEHHL+RFR +QLDGEVLL M+RRDF RMGVT EQ RIL+ L + G G VD SDGLDPDHPDTCKIC+DA VDILFLPC H CTC+RCG + GKPCILCR+ V++ QRVIKL
Sbjct: 38 AVLAPSPSPLLRAQNIAPQLIGKQGQTVSKLMKESRAKIVVKPYPDRSGNDVVITGTPNAVKVSKSRVLGSTLDCCRGCVRVRCLAIPLYFQAVVVGRCDGVGAGCFVVVVNALSLRHPLQCTRRVTMRVEEEFYRSKGCQPTALPPPSSAVAAARKAEGARARPAQP-----------------VTGXXXXXXXXXXXXVVVE-----------DGAWGG--ELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDFERMGVTVGEQIRILNAL-KGSGAGGVD---------------DSDEDSDGLDPDHPDTCKICLDALVDILFLPCAHHCTCSRCGSAYEGKPCILCRRVVDKVQRVIKL 358
BLAST of mRNA_H-canaliculatus_F_contig1199.1737.1 vs. uniprot
Match: A0A6H5JGK6_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK6_9PHAE) HSP 1 Score: 102 bits (253), Expect = 5.650e-18 Identity = 65/181 (35.91%), Postives = 80/181 (44.20%), Query Frame = 1
Query: 175 GGNGLA--QRRGMEAAATAGRACALCGGRRSPTRGCADADCETSFCGRCEASLPECSNCLMPHCEGHSNDPDMDCLLRCQGEPECREGVCQLCKSSSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSIWIPSSXXXXXXXXXXXXLVRMRPCDRCGRAVGVERLREAMGSRAGFLERWS 711
GG+G++ + EA G A +C G TR C++ CET FC C SL ECS CLMPHC + DPD DCLL CQG PECREG C + C ++R RPCD CG V +R+RE M S GF+E+WS
Sbjct: 99 GGDGVSGDEMIAAEAVCCCGCARLVCSGPECSTR-CSNTSCETVFCSSCRLSLSECSGCLMPHCR-RAGDPDTDCLLPCQGHPECREG----CNADRCLLC----------------------------------------------VMRSRPCDMCGHPVSADRVREHMASTTGFIEKWS 227
BLAST of mRNA_H-canaliculatus_F_contig1199.1737.1 vs. uniprot
Match: A0A8B8ADR3_CRAVI (death-associated inhibitor of apoptosis 2-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8ADR3_CRAVI) HSP 1 Score: 62.8 bits (151), Expect = 2.120e-6 Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1
Query: 2974 CKICMDATVDILFLPCRHQCTCARCGVGFVGKPCILCRQRVERAQRVIK 3120
CKICMDA +DILFLPC H CTC C + + C +C++R++ QRV K
Sbjct: 305 CKICMDAEMDILFLPCGHLCTCRTCAIKL--RECPVCKERIQNQQRVYK 351 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1199.1737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1199.1737.1 >prot_H-canaliculatus_F_contig1199.1737.1 ID=prot_H-canaliculatus_F_contig1199.1737.1|Name=mRNA_H-canaliculatus_F_contig1199.1737.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1031bp MDRHHRQLQTAKRGAFDSDATVMEAIGTGAQAFAAARTFNTSWNSGGNGLback to top mRNA from alignment at H-canaliculatus_F_contig1199:2782..16415+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1199.1737.1 ID=mRNA_H-canaliculatus_F_contig1199.1737.1|Name=mRNA_H-canaliculatus_F_contig1199.1737.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=13634bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1199:2782..16415+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1199:2782..16415+ >mRNA_H-canaliculatus_F_contig1199.1737.1 ID=mRNA_H-canaliculatus_F_contig1199.1737.1|Name=mRNA_H-canaliculatus_F_contig1199.1737.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=6186bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1199:2782..16415+ (Hapterophycus canaliculatus Oshoro5f female)back to top |