mRNA_H-canaliculatus_F_contig11987.1736.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11987.1736.1
Unique NamemRNA_H-canaliculatus_F_contig11987.1736.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11987.1736.1 vs. uniprot
Match: D7G278_ECTSI (Tafazzin family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G278_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 6.410e-55
Identity = 89/98 (90.82%), Postives = 94/98 (95.92%), Query Frame = 1 
Query:  190 MTPVAVLSRAVLFGLNTTRLIEDERHAHLVDLVRKRPEGEPLLTVSNHASTLDDPAVMAVLLPWDVVLRPRLMRWSVCSQEICFETPAIASFFGAGKV 483
            MTPVAVLSRAVLFGLN TRL++DERHA LVDLVR RPEGEPLLTV+NHASTLDDPAVMAVLLPWD+V+RPRLMRWSVCSQEICFET AIASFFGAGKV
Sbjct:    1 MTPVAVLSRAVLFGLNNTRLVKDERHARLVDLVRDRPEGEPLLTVANHASTLDDPAVMAVLLPWDIVVRPRLMRWSVCSQEICFETRAIASFFGAGKV 98
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11987.1736.1 vs. uniprot
Match: A0A835ZF50_9STRA (Tafazzin family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF50_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.560e-29
Identity = 55/98 (56.12%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:  190 MTPVAVLSRAVLFGLNTTRLIEDERHAHLVDLVRKRPEGEPLLTVSNHASTLDDPAVMAVLLPWDVVLRPRLMRWSVCSQEICFETPAIASFFGAGKV 483
            ++ V  LS+AVLFG N  ++ +DER+ HL+  ++ RPEG+PLLTV NH STLDDPA+     PW V L PR MRW++CSQEICF     A+FFG+GKV
Sbjct:    3 ISSVTTLSKAVLFGANDMKIKDDERYKHLIRCIKYRPEGKPLLTVGNHNSTLDDPALFGAFAPWSVDLTPRQMRWTICSQEICFMN---AAFFGSGKV 97
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11987.1736.1 vs. uniprot
Match: A0A7S2S0C2_9STRA (Tafazzin family protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0C2_9STRA)

HSP 1 Score: 116 bits (291), Expect = 6.830e-28
Identity = 70/177 (39.55%), Postives = 97/177 (54.80%), Query Frame = 1 
Query:   13 RSLAGVGAASAALSGTAYYYRPDPS---GELLKSR----RTKSPRDRCDDATEAE-------------PVLLQAARSAVMTPVAVLSRAVLFGLNTTRLIEDERHAHLVDLVRKRPEGEPLLTVSNHASTLDDPAVMAVLLPWDVVLRPRLMRWSVCSQEICFETPAIASFFGAGKV 483
            R +AG+    A    T YYYRP P    G  +++R    R  + +   DD    E             PVLL A R+ V T +  LS+  L  +N  R+  +     LV+ V  RPE  PL+TV+NHAS LDDPA++A +LPW +VL+P   RW++C+QE+CF+   IA+F G GKV
Sbjct:    4 RGIAGLVTVGATACATGYYYRPAPDVEDGVWVQTRLMHIRGPAAQPAVDDGFRGERPPVGDVDVASPPPVLLAATRAVVTTAIGALSKIWLTWMN--RMSVEGELGTLVEAVEGRPEDTPLITVANHASVLDDPALLAAMLPWRIVLQPSKHRWAICTQEVCFKDDLIAAFVGCGKV 178
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11987.1736.1 vs. uniprot
Match: A0A6H5JZ81_9PHAE (Tafazzin family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ81_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.300e-23
Identity = 60/154 (38.96%), Postives = 82/154 (53.25%), Query Frame = 1 
Query:   28 VGAASAALSGTAYYYRPDPSGELLKSRRTKSPRDRCDDAT--EAEPVLLQAARSAVMTPVAVLSRAVLFGLNTTRLIEDERHAHLVDLVRKRPEGEPLLTVSNHASTLDDPAVMAVLLPWDVVLRPRLMRWSVCSQEICFETPAIASFFGAGKV 483
             GA   A  GTA+ YRP+P         +  P D   +    E E  L++ +R             ++  LNT  L EDE +   + LV +RP G PLLTV NH S +DDP V+  +LP  V +RP LMRW++C+QEICF+  A  + FG+ KV
Sbjct:   12 AGALGLATVGTAFVYRPNPW--------SNPPSDPLSERAGQEEESFLMKTSRLFTFVTGTAAFSILMHVLNTFELKEDEHYRKFLSLVEERPSGVPLLTVCNHCSPVDDPGVLVGMLPARVTVRPELMRWTICAQEICFKWTAAGTGFGSAKV 157
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11987.1736.1 vs. uniprot
Match: A0A7S1G2E3_9STRA (Tafazzin family protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G2E3_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.200e-22
Identity = 56/142 (39.44%), Postives = 82/142 (57.75%), Query Frame = 1 
Query:   58 TAYYYRPDPSGELLKSRRTKSPRDRCDDATEAEPVLLQAARSAVMTPVAVLSRAVLFGLNTTRLIEDERHAHLVDLVRKRPEGEPLLTVSNHASTLDDPAVMAVLLPWDVVLRPRLMRWSVCSQEICFETPAIASFFGAGKV 483
            TAY YRP  S E+   +  +          + E  L+  AR   + PV +  RA++  LN + +I+ E+    VD   +  +G  ++TV+NH STLDDP ++  LLP  V + PRL+RWSVCS+E+CF   AI +FFG G+V
Sbjct:   23 TAYKYRPRGSWEVDYHKAVEE-NPELAQPNKVEAKLIDLARYFAVWPVGIAERALMRILNRSEIIDHEKLTRFVDPAAR--DGRAMVTVANHVSTLDDPFLVTRLLPPSVFINPRLLRWSVCSEELCFFNDAIGTFFGVGRV 161
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11987.1736.1 vs. uniprot
Match: A0A835ZCU4_9STRA (Tafazzin family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU4_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.020e-21
Identity = 56/139 (40.29%), Postives = 79/139 (56.83%), Query Frame = 1 
Query:   70 YRPDPSGELLKSRRTKSPRDRCDDATEAEPVLLQAARSAVMTPVAVLSRAVLFGLNTTRLIEDERHAHLVDLVRKRPEGEPLLTVSNHASTLDDPAVMAVLLPWDVV-LRPRLMRWSVCSQEICFETPAIASFFGAGKV 483
            YRP P  +  K    +        A E EP+L+   R  +     V  +A+L   NT R+ +DE +A  +  V  R  G PL+TVSNHA  LDDP ++A L+P+ +  L+P LMR+++CSQ+ICF    + SFFGA KV
Sbjct:   85 YRPTPYSDPPKDALAER-------AHEVEPLLMALTRRLLFLVGTVGCKALLQVANTCRITKDEHYAAFLRAVEARGNGTPLITVSNHACPLDDPCMLAALMPFRLAALKPELMRFTICSQDICFNNGVLESFFGAAKV 216
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11987.1736.1 vs. uniprot
Match: A0A7S0F2K9_9CRYP (Tafazzin family protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F2K9_9CRYP)

HSP 1 Score: 99.0 bits (245), Expect = 1.630e-21
Identity = 57/144 (39.58%), Postives = 86/144 (59.72%), Query Frame = 1 
Query:   61 AYYYRPDPS--GELLKSRRTKSPRDRCDDATEAEPVLLQAARSAVMTPVAVLSRAVLFGLNTTRLIEDERHAHLVDLVRKRPEGEPLLTVSNHASTLDDPAVMAVLLPWDVVLRPRLMRWSVCSQEICFET-PAIASFFGAGKV 483
            A+YYRP P    + +K+  TK      D   E  P  L  AR  +   V  + + ++   NT  +++DE +A+L+  +R R +G  LLT SNHAS+LDDP +++ L+P+DV L P+ MRWS+ +QEI F   P + +F GAG+V
Sbjct:   39 AFYYRPLPDYRNKGIKAGFTKLR----DLPAEYVPFGLLVARGIIQFLVVSIFKFIVGFRNTVEVVQDENYAYLLRQMRSREDGVSLLTASNHASSLDDPGLISCLIPYDVALSPKRMRWSLATQEIAFPNIPVVQAFMGAGQV 178
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11987.1736.1 vs. uniprot
Match: A0A7S2NY36_9STRA (Tafazzin family protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NY36_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 8.850e-21
Identity = 43/87 (49.43%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:  235 NTTRLIEDERHAHLVDLVRKRPEG----EPLLTVSNHASTLDDPAVMAVLLPWDVVLRPRLMRWSVCSQEICFETPAIASFFGAGKV 483
            NT  L++D+ +  L+  +R+        + ++TVSNH ST+DDP +  +LLPWD+ LRP  +RW++CSQEICF+ PAIA+ FGAGKV
Sbjct:  124 NTFTLLKDDHYDFLIQTIRQETNNPGSNKAVITVSNHNSTIDDPVLFGLLLPWDLKLRPMKIRWTLCSQEICFKNPAIAAMFGAGKV 210
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11987.1736.1 vs. uniprot
Match: A0A7S0XWS2_HEMAN (Tafazzin family protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XWS2_HEMAN)

HSP 1 Score: 96.7 bits (239), Expect = 1.410e-20
Identity = 61/147 (41.50%), Postives = 87/147 (59.18%), Query Frame = 1 
Query:   58 TAYYYR--PDPS--GELLKSRRTKSPRDRCDDATEAEPVLLQAARSAVMTPVAVLSRAVLFGLNTTRLIEDERHAHLVDLVRKRPEGEPLLTVSNHASTLDDPAVMAVLLPWDVVLRPRLMRWSVCSQEICF-ETPAIASFFGAGKV 483
            +AYYYR  PD S  GEL        P+ R  DA    P+ L  ARS V+     L + ++  LN  + ++DE +  L   +R RP G PLLTVSNH S+LDDP +M+ L+PWDV++ P  +RW++ +Q+I F + P + SF   G+V
Sbjct:   50 SAYYYRALPDYSHAGELAPQ-----PKLRELDARRV-PLGLSIARSIVVFLTTSLCKLLMNILNKVQWVDDECYRFLQSSIRHRPAGVPLLTVSNHQSSLDDPGLMSSLIPWDVIMTPSRVRWAIATQDIVFPKKPFVQSFMTCGQV 190
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11987.1736.1 vs. uniprot
Match: A0A7S4NET4_GUITH (Tafazzin family protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NET4_GUITH)

HSP 1 Score: 95.5 bits (236), Expect = 3.270e-20
Identity = 54/143 (37.76%), Postives = 85/143 (59.44%), Query Frame = 1 
Query:   61 AYYYRPDPSGELLKSRRTKSPRDRCDDA-TEAEPVLLQAARSAVMTPVAVLSRAVLFGLNTTRLIEDERHAHLVDLVRKRPEGEPLLTVSNHASTLDDPAVMAVLLPWDVVLRPRLMRWSVCSQEICFET-PAIASFFGAGKV 483
            A+YYRP P     +S+  K    +  +   E  P+ L  AR  +   V  + + ++   NT  +++DE +++L+  +R R EG  LLT SNHAS+LDDP +++ L+P DV + P+ MRWS+ +QEI F   P + +F GAG+V
Sbjct:   39 AFYYRPLPD---YRSKGMKVGITKLRELPAEYVPLGLLVARGIIQFLVVSIFKFIVGVRNTVEVVKDENYSYLMQQMRSRQEGVSLLTASNHASSLDDPGLLSCLIPMDVAMSPKRMRWSLATQEIAFPNIPLVQAFMGAGQV 178
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11987.1736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G278_ECTSI6.410e-5590.82Tafazzin family protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZF50_9STRA1.560e-2956.12Tafazzin family protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2S0C2_9STRA6.830e-2839.55Tafazzin family protein n=1 Tax=Rhizochromulina ma... [more]
A0A6H5JZ81_9PHAE3.300e-2338.96Tafazzin family protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1G2E3_9STRA3.200e-2239.44Tafazzin family protein n=1 Tax=Bicosoecida sp. CB... [more]
A0A835ZCU4_9STRA1.020e-2140.29Tafazzin family protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0F2K9_9CRYP1.630e-2139.58Tafazzin family protein (Fragment) n=1 Tax=Hanusia... [more]
A0A7S2NY36_9STRA8.850e-2149.43Tafazzin family protein n=1 Tax=Leptocylindrus dan... [more]
A0A7S0XWS2_HEMAN1.410e-2041.50Tafazzin family protein (Fragment) n=2 Tax=Hemisel... [more]
A0A7S4NET4_GUITH3.270e-2037.76Tafazzin family protein n=1 Tax=Guillardia theta T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11987contigH-canaliculatus_F_contig11987:239..3827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.0
Seed ortholog evalue1.3e-44
Seed eggNOG ortholog2880.D7G278
KEGG rclassRC00004,RC00037
KEGG koko:K13511
KEGG ReactionR09037
KEGG Pathwayko00564,map00564
EggNOG free text desc.cardiolipin acyl-chain remodeling
EggNOG OGsKOG2847@1,KOG2847@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Hectar predicted targeting categorymitochondrion
Exons3
Model size483
Cds size483
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11987.1736.1prot_H-canaliculatus_F_contig11987.1736.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11987 239..3827 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928906.326984-CDS-H-canaliculatus_F_contig11987:238..3641622928906.326984-CDS-H-canaliculatus_F_contig11987:238..364Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11987 239..364 +
1696845607.4155369-CDS-H-canaliculatus_F_contig11987:238..3641696845607.4155369-CDS-H-canaliculatus_F_contig11987:238..364Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11987 239..364 +
1622928906.791476-CDS-H-canaliculatus_F_contig11987:2805..29751622928906.791476-CDS-H-canaliculatus_F_contig11987:2805..2975Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11987 2806..2975 +
1696845607.4332197-CDS-H-canaliculatus_F_contig11987:2805..29751696845607.4332197-CDS-H-canaliculatus_F_contig11987:2805..2975Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11987 2806..2975 +
1622928906.802711-CDS-H-canaliculatus_F_contig11987:3640..38271622928906.802711-CDS-H-canaliculatus_F_contig11987:3640..3827Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11987 3641..3827 +
1696845607.4458025-CDS-H-canaliculatus_F_contig11987:3640..38271696845607.4458025-CDS-H-canaliculatus_F_contig11987:3640..3827Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11987 3641..3827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11987.1736.1

>prot_H-canaliculatus_F_contig11987.1736.1 ID=prot_H-canaliculatus_F_contig11987.1736.1|Name=mRNA_H-canaliculatus_F_contig11987.1736.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=161bp
MAWRRSLAGVGAASAALSGTAYYYRPDPSGELLKSRRTKSPRDRCDDATE
AEPVLLQAARSAVMTPVAVLSRAVLFGLNTTRLIEDERHAHLVDLVRKRP
EGEPLLTVSNHASTLDDPAVMAVLLPWDVVLRPRLMRWSVCSQEICFETP
AIASFFGAGKV
back to top

mRNA from alignment at H-canaliculatus_F_contig11987:239..3827+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11987.1736.1 ID=mRNA_H-canaliculatus_F_contig11987.1736.1|Name=mRNA_H-canaliculatus_F_contig11987.1736.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3589bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11987:239..3827+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCATGGAGAAGGAGCTTGGCTGGGGTAGGTGCTGCATCTGCGGCTCT
TTCGGGGACAGCGTACTACTATCGTCCCGATCCGAGCGGCGAGCTTCTGA
AGAGCAGACGCACGAAATCGCCAAGGGTACGTGGCAAGTTGGGCGGTTGC
GAGGTTGTGACGCGTAGTGGAGTTGCTCTGTCCTGCCGCTCGAGCTCGAG
CTGTTTTGAGCGCGCGTCTGTCTCACCTTGTTGGGGAAGCAGCAGTCTCC
GCAATGGTGCATTCACACTTTAGGCGAGGAAGTTGATCGTATATGTCCGT
GCGCGCGTTGTTGTGTTTGTCACGCACGGGCCGACGGCCCCGACACAGCC
AGTGCACATATTCCGCGAAGCTGATGACGTTCTACCCGTACCACCAAAAG
GCCAACCGATTTTTTGTGGTGTAACTTTGTCGACTGTTCCTCCAGATGTA
GAACTAAAATAGGATTTAACACCGAGCCAATATCTGCTCTGCCGCTACTG
TCCAAATCGGATGCATCTGAAAGGCTACATAATAACAAACGTCGCACGCT
CGAGAATGTGGGGAGATGCGAGGAAAGCAAGATCGTTTCACGACGGCCAC
GACGTCGACGGCCATGACCTTCACTACCACCCTAGGGTGTGGGCAGGACT
ACGGAGTTTCGCTCCCCTCTTTCGCCTCCTAGCCGTCCACGCTTTCTCCA
CCTTGAGTGCCAGCGATCGGTGCAAATATAGGTCACTACGCTGCAGTCAC
GTCACGAGGCACCCCTGAAGCCGTGTAACAGAACTCGTCCTTATTTCTAT
GTTGGGCTGTGCCCCCGAACCATCACGCAGCCCTTAATGGCACGTCAGTT
TGCGCCATTCCTTCCCGACTTCCCAACCGCGCAATGTGTACGAGGAAGGG
AGCCCAACCCATAATTTTTTCGCACAGCTCGTGCATCGATTGGTGCGCAG
CAGAAGAGACATCCTTTTCACTTCTGCAAGTACTCGTTTTGAATTCCCGT
TGTCAACTTGCTCTTCATGCGCACGCACACACGGACGCAACCAACGTGAA
GTGTTTCAAGGGCAGAGGCTATCCTGCCGCGCGTGCCAAGGCATGACAAT
TGCTCTGCCCAAGTGCCTGTAGCCGAACAGCACCCCAAATAGCTCCATCG
GCGTGGGATTCCCTTTCCCGGCCTCTGACATGCACTGATCCATCGGACCC
TGTCGTGGACCCGCGAGGTGCAATGGACCCGGATTGTGTTGGAGAGGCAT
GACGAAAAGATCAGCAAACTTGACAACATGTGCATCGTGTACACCAAGAA
GCGCCCGATGCGTTTTAGATCACGTCCCCGCCAAAGGCGGAGGGCCAGAT
AGCGAAGAAAGTCCCGCTAGTTGTCGGCAATGTACCTCTCGCCCCTCCCC
GCAATGGCACCGGAGTCGCTTCCAGAGGTGTGTACTCTTGTAAAGTGGGC
GACGGATCCACCCACACGACTGTCTTTCAAACGCGGACAAGCGTATTTTA
AGAGGAAAAGTACAATCGGAAAAGCAGCAGTTGATGTAGAGCCTCTGCCC
TGGGTTGCCTTTGAATGCCCATGTGATTTCCATCGTTTTTTTGGGCCTGT
GAGTTTGTGGGGCTGCGAGTTGGCTGTGTTCAACCATGTTTGAAGCATTG
ACGATTGGCCTGAGCCCACGTGCCTCTTATTTCCTGATTTGTCGGCGAAC
CACACCGTCAAAACAAGCTGTTAGTTACCAAACGAAATATGGGAGGAACA
TGTTGCATCATATGCCTCTTCGGGCTTTCAAGTAATGTTTTATTTGTTGT
ACCAGGGCGTGGGTGGTACTGGAACGACATCCCGGCGTCGGTACCCAACA
CGAGCACGGGTTGCGAACACAAACCCACGAACGCCGAAAACTCTCCTGTA
CAACTTTGCATCTTCCTTACAGTCTTACTCGCGCCCTAAGGTCTGCCGCC
GGGTCACGCGTATGTCAGCTCTCTGGCTCCGTAAGGGTAATGTCAAAACA
GCTCGGAGGTGATGGTGGAGGACATTATGCGCTGGCGGTCGGCGATGTGT
TCCGTCCGTACGTCGCTTGTATTTTTAGAGAACACGATTAAAAATGATTA
AAAAAGAACACCACCCCATCCACTTGCACCTCGTGGTGTGTTTGTGCATG
CTTCACACCGCTCTCTCTCTCGCTCCCTGAAGCCCCTCTGCACTGAAGTG
ATACTCGGCCTACGTTGAGCTTGACGAGTTTTTGGTCGTGTTCTCCATGC
ACCCGTTCGACTCGACCGACAAGCCCTTACTATATCGTATCGTGCAAACA
TCCGCGACGCAACAACGACGAAGTCAACGACTACAACAACAAGATATACA
AAGACAAGATGTGGATAAAACGTGCAGGCAAGGAAGCAGGCAGGCAAATA
GACGAAGAAGTAAACGAACAAGCGAACAAGCAAGCGAACAGACAATCCAG
GAAGCAAGCCAGCAAGCAGACAGACAAGCTTACAGGCAACAGGGCAAGAC
ACAAACAAGCAGGCAGGCAAGCCTACAAACAACAGATATGAACTTGACCA
ACTCACGAACAACGCAGGACCGGTGCGATGACGCGACAGAGGCGGAACCC
GTGCTGCTGCAGGCGGCGAGGTCGGCGGTCATGACCCCCGTGGCCGTCTT
GAGCCGCGCCGTGCTCTTCGGGCTCAATACCACTCGCCTAATCGAGGACG
AGCGCCACGCCCATCTCGTAGATCTCGTGCGTAAGAGGTGAGTGACACTT
GCGTACTCATCTCTGCCTTGCATTTCAGGTTGTGACTTTGTTTTCTCTTT
TTCTTCGGGGAGGCGAGGGGGGCGGGCAAGGGCGGAGGGTCCTCGATAGT
GGGAACTGTCGGGTGAGGGTGGCAACCGTATTTTTGGCGGCGGAAACGGG
GCGTGCGCATCGGTCGGTCGCCCTCGTCGTCTTCCCGTTGGCCACGACGC
ATCTCGAGGCGCGGAGGCGCACCTTTTCTGTAATCGTAGCAAAGTGGCCA
CTTTGGGCGGGCCTTTATTTTGTACGGTTCATCCACGGCCTGGTCTGATG
CACGATGATGGCAAAATGGCATCACGGCGTGTTTAGCGTTTCCCTTGCTT
CCTGTCCCCCGCCAATTGCCCGACGACTCCGAAGTACCCTCGTCTCTCGT
AGCATCAATAAATATAGAACGTGGTCCGCCTCCTCTCTACATTCGGCGCC
TGCTCTGGGCCGATAAAACACTTCCCGGAAACTCCGCGCACGGTTTAGTA
CCTTGCATTCACACATCGTCCACGCGCAGCTATCGCCAAAAGCGTTTGTT
CACCTCTTTACGAAACCACAGACCGCCATGCCAGCCATACCCGCAAAGCA
TGGTCCGACCCCCCCCCGCGCACCCTCTCGCCTGTTCCTCGCACCGATTC
AGGCCGGAGGGAGAACCTCTCTTGACTGTCTCCAACCACGCCTCAACCCT
GGACGACCCGGCGGTAATGGCTGTCCTGCTGCCGTGGGACGTTGTTCTGA
GGCCGAGGCTGATGCGCTGGTCGGTTTGCAGCCAGGAAATCTGCTTCGAG
ACGCCCGCGATCGCGTCCTTCTTCGGGGCGGGGAAGGTT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11987:239..3827+

>mRNA_H-canaliculatus_F_contig11987.1736.1 ID=mRNA_H-canaliculatus_F_contig11987.1736.1|Name=mRNA_H-canaliculatus_F_contig11987.1736.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=966bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11987:239..3827+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCATGGAGAAGGAGCTTGGCTGGGGTAGGTGCTGCATCTGCGGCTCT
TTCGGGGACAGCGTACTACTATCGTCCCGATCCGAGCGGCGAGCTTCTGA
AGAGCAGACGCACGAAATCGCCAAGGATGGCATGGAGAAGGAGCTTGGCT
GGGGTAGGTGCTGCATCTGCGGCTCTTTCGGGGACAGCGTACTACTATCG
TCCCGATCCGAGCGGCGAGCTTCTGAAGAGCAGACGCACGAAATCGCCAA
GGGACCGGTGCGATGACGCGACAGAGGCGGAACCCGTGCTGCTGCAGGCG
GCGAGGTCGGCGGTCATGACCCCCGTGGCCGTCTTGAGCCGCGCCGTGCT
CTTCGGGCTCAATACCACTCGCCTAATCGAGGACGAGCGCCACGCCCATC
TCGTAGATCTCGTGCGTAAGAGGACCGGTGCGATGACGCGACAGAGGCGG
AACCCGTGCTGCTGCAGGCGGCGAGGTCGGCGGTCATGACCCCCGTGGCC
GTCTTGAGCCGCGCCGTGCTCTTCGGGCTCAATACCACTCGCCTAATCGA
GGACGAGCGCCACGCCCATCTCGTAGATCTCGTGCGTAAGAGGCCGGAGG
GAGAACCTCTCTTGACTGTCTCCAACCACGCCTCAACCCTGGACGACCCG
GCGGTAATGGCTGTCCTGCTGCCGTGGGACGTTGTTCTGAGGCCGAGGCT
GATGCGCTGGTCGGTTTGCAGCCAGGAAATCTGCTTCGAGACGCCCGCGA
TCGCGTCCTTCTTCGGGGCGGGGAAGGTTGCCGGAGGGAGAACCTCTCTT
GACTGTCTCCAACCACGCCTCAACCCTGGACGACCCGGCGGTAATGGCTG
TCCTGCTGCCGTGGGACGTTGTTCTGAGGCCGAGGCTGATGCGCTGGTCG
GTTTGCAGCCAGGAAATCTGCTTCGAGACGCCCGCGATCGCGTCCTTCTT
CGGGGCGGGGAAGGTT
back to top