mRNA_H-canaliculatus_F_contig11978.1728.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11978.1728.1
Unique NamemRNA_H-canaliculatus_F_contig11978.1728.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11978.1728.1 vs. uniprot
Match: D8LIR0_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIR0_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 1.240e-78
Identity = 135/162 (83.33%), Postives = 148/162 (91.36%), Query Frame = 3 
Query:    3 LAAADKERMKSELAAAGLTRLPAKNSNASVSVPGGPTSLVLPLARVRKTVRLDPAVGNISKEGLLLVTKATEVFMAFMADHAWKIGRQTGRKSVRPCDVADFVFASPEMYWLKDEFRDERSSVKKR-SKPEASGTRLAGAEKAGVTAVPKAANPITSFFKKA 485
            LAA DKER+K+ELAAAGLT+LP KNS+ S +V GGPTSLVLPLARVRKTVRLDP+VGNISKEGLLLVTKATEVFMA +ADHAW IGRQTGRKSVRPCDVADFVFA+PEMYWLKDEFR+ERSSVKK+ S+PEA G + AGA KAGVTAVPK A PITSFF+KA
Sbjct:  233 LAAEDKERVKNELAAAGLTKLPTKNSS-SAAVAGGPTSLVLPLARVRKTVRLDPSVGNISKEGLLLVTKATEVFMAVLADHAWNIGRQTGRKSVRPCDVADFVFAAPEMYWLKDEFREERSSVKKKQSRPEAGGAKAAGATKAGVTAVPKGAKPITSFFQKA 393
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BLAST of mRNA_H-canaliculatus_F_contig11978.1728.1 vs. uniprot
Match: A0A6H5KCQ8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCQ8_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 9.160e-17
Identity = 54/88 (61.36%), Postives = 58/88 (65.91%), Query Frame = 3 
Query:    3 LAAADKERMKSELAAAGLTRLPAKNSNASVSVPGGPTSLVLPLARVRKTVRLDPAVGNISKEGLLLVTKATEVFMAFMADHAWKIGRQ 266
            LAA DKER+K+ELAAAGL +LP KN                         RLDP+VGNISKEGLLLVTKATEVFMA M DHAWKIGRQ
Sbjct:  704 LAAEDKERVKNELAAAGLPKLPTKN-------------------------RLDPSVGNISKEGLLLVTKATEVFMAVMTDHAWKIGRQ 766
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BLAST of mRNA_H-canaliculatus_F_contig11978.1728.1 vs. uniprot
Match: A0A7S2FZW8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZW8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.090e-12
Identity = 35/78 (44.87%), Postives = 55/78 (70.51%), Query Frame = 3 
Query:  117 LVLPLARVRKTVRLDPAVGNISKEGLLLVTKATEVFMAFMADHAWKIGRQTGRKSVRPCDVADFVFASPEMYWLKDEF 350
            +V+P+ RVR+T +LDP V NI+KE   LV KATE F+A +A+ ++KI   +GR++++  D+ D V   P+  WL+D+F
Sbjct:   90 MVIPVGRVRRTCKLDPDVKNITKEATALVAKATERFLAQIAEESFKISSLSGRRTLKTDDIRDCVNRLPQYEWLRDDF 167
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BLAST of mRNA_H-canaliculatus_F_contig11978.1728.1 vs. uniprot
Match: A0A835ZK76_9STRA (Histone-like transcription factor (CBF/NF-Y) and archaeal histone-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK76_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 7.420e-10
Identity = 32/83 (38.55%), Postives = 54/83 (65.06%), Query Frame = 3 
Query:  108 PTSL--VLPLARVRKTVRLDPAVGNISKEGLLLVTKATEVFMAFMADHAWKIGRQTGRKSVRPCDVADFVFASPEMYWLKDEF 350
            P SL  V P+ R+R+ ++LDP VGN++KE   LV KA ++F+  +A  +W++  + GR++++  D+A  V A  E +W K +F
Sbjct:  271 PVSLEAVCPMGRIRRIIKLDPEVGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADF 353
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BLAST of mRNA_H-canaliculatus_F_contig11978.1728.1 vs. uniprot
Match: W4H0Q5_9STRA (HMG box domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H0Q5_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 7.560e-10
Identity = 57/166 (34.34%), Postives = 88/166 (53.01%), Query Frame = 3 
Query:    3 LAAADKERM---KSELAAAGLTRLPAKNSNASVSVPGGPTSLV-LPLARVRKTVRLDPAVGNISKEGLLLVTKATEVFMAFMADHAWKIGRQTGRKSVRPCDVADFVFASPEMYWLKDEFRDERSS--VKKRSKPEASGTRLAGAEKAGVTAVPKAANPITSFFKK 482
            +AAADKER    K  L   G+      +  A+  VP    SL+ LP ARV++ +  DP V  +SK+ +L VTKATE+F+ F+A         + RK+V+  DV   + +   + WL+D+F + +      K SK  A+ + +A  E A  ++   A + ITSFF +
Sbjct:  121 MAAADKERYLNDKQSLMDQGI------DIEAAPRVPRNDESLLTLPSARVKRIMLTDPDVNKLSKDSVLAVTKATELFIHFLATKGHDSATISKRKTVKDSDVLTAIHSHAVLDWLRDDFPESKKVPVAAKLSKKSAAHSNVAATE-ASPSSSSSAKSKITSFFSR 279
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BLAST of mRNA_H-canaliculatus_F_contig11978.1728.1 vs. uniprot
Match: A0A1V9ZFH9_9STRA (HMG box domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZFH9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.540e-9
Identity = 53/166 (31.93%), Postives = 86/166 (51.81%), Query Frame = 3 
Query:    3 LAAADKERM---KSELAAAGLTRLPAKNSNASVSVPGGPTSLVLPLARVRKTVRLDPAVGNISKEGLLLVTKATEVFMAFMADHAWKIGRQTGRKSVRPCDVADFVFASPEMYWLKDEF--RDERSSVKKRSKPEASGTRLAGAEKAGVTAVPKAANPITSFFKKA 485
            LA  DKER    K+EL A G+   P K + AS  V      L LP ARV++ +  D  V  +SK+ L+ +TKATE+F+ ++A   +     + RK+++  D+   +     + WL+D+F     RS+V+ ++   +S T  +G            A  I+SFF++A
Sbjct:  113 LALDDKERYAKEKAELLARGIDIEPEKTTVASEDV------LSLPCARVKRIINADQDVSKVSKDALIAITKATELFIKYLAAKGYDSAMISKRKTIKDSDLIQVIHGHGALDWLRDDFPQTSSRSAVEPKAAKVSSRTEPSGN-----------APSISSFFQRA 261
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BLAST of mRNA_H-canaliculatus_F_contig11978.1728.1 vs. uniprot
Match: A0A1V9ZYX4_9STRA (HMG box domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYX4_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 8.430e-9
Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = 3 
Query:   15 DKERM---KSELAAAGLTRLPAKNSNASVSVPGGPTSLVLPLARVRKTVRLDPAVGNISKEGLLLVTKATEVFMAFMADHAWKIGRQTGRKSVRPCDVADFVFASPEMYWLKDEF 350
            DKER    K  L   G+   P K   AS  +      L+LPLARV++ ++ DP VG ISK+ L+++TKATE F+ ++A         + RK+++  D+   +     + WL+D+F
Sbjct:  104 DKERYAKAKERLLERGIDIEPEKPEVASEDI------LLLPLARVKRIIQADPDVGKISKDALIVITKATEQFIQYLAAKGQDSAMISKRKTIKDSDLLQVIHGHGSLDWLRDDF 212
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BLAST of mRNA_H-canaliculatus_F_contig11978.1728.1 vs. uniprot
Match: A0A2D4BV20_PYTIN (HMG box domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BV20_PYTIN)

HSP 1 Score: 64.7 bits (156), Expect = 1.990e-8
Identity = 53/186 (28.49%), Postives = 92/186 (49.46%), Query Frame = 3 
Query:    3 LAAADKERMKSELAAAGLTRL--PAKNSNASVSVPGGPTSLVL-PLARVRKTVRLDPAVGNISKEGLLLVTKATEVFMAFMADHAWKIGRQTGRKSVRPCDVADFVFASPEMYWLKDEFRD-ERSSVKKRSKPEASGTRLAGAEKAGVTAVPKAANPITSFFKKA*SCVGASMTIDLDGHVTVGVN 548
            LAA DKER + E       RL  P  ++ A V  P       L PL RV++ ++ DP V  +S+E L+ ++KA+E+F  ++A  +++      ++ V+  DVA  +  +P + WL+D+F D ++S+  +++KP           K      P+ +  +++FFK      GA    +  GH     N
Sbjct:   56 LAAKDKERYERE-------RLENPVXDAPADVVAPVEVEHACLYPLGRVKRXIQSDPDVNKVSREALVAISKASELFAQYLATKSYEQTLFNNKRQVKASDVARAIHTTPVLDWLRDDFPDMKQSAATQKTKP----------SKPQAPVEPRTS--VSTFFKPGTDREGALEVSEPQGHAAAEQN 222
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BLAST of mRNA_H-canaliculatus_F_contig11978.1728.1 vs. uniprot
Match: A0A8K1FA27_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FA27_PYTOL)

HSP 1 Score: 62.8 bits (151), Expect = 7.540e-8
Identity = 48/162 (29.63%), Postives = 85/162 (52.47%), Query Frame = 3 
Query:    3 LAAADKERMKSELAAAGLTRLPAKNSNASVSVPGGPTS--LVLPLARVRKTVRLDPAVGNISKEGLLLVTKATEVFMAFMADHAWKIGRQTGRKSVRPCDVADFVFASPEMYWLKDEFRDERSSVKKRSKPEASGTRLAGAEKAGVTAVPKAANPITSFFKK 482
            LA  DKER + E        LP   +NA   V   PT    + PL RV++ ++ DP V  +S+E L+ ++KA+E+F  ++A  +++      ++ ++  DVA  +  +  + WL+++F D + +   RS    S +  A + KA  T   KA   ++SFF++
Sbjct:   56 LAVQDKERYEREKLE-NPVELP--EANAQDGVEDEPTGNVCIYPLGRVKRIIQSDPDVNKVSREALIAISKASELFAQYLATKSYEQTLYNNKRQIKASDVARAIQTTSVLDWLREDFPDVKPAAATRSNGSKSTSDTATSRKAKAT---KAG--VSSFFQQ 209
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BLAST of mRNA_H-canaliculatus_F_contig11978.1728.1 vs. uniprot
Match: H3GZX8_PHYRM (HMG box domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GZX8_PHYRM)

HSP 1 Score: 62.4 bits (150), Expect = 7.560e-8
Identity = 38/122 (31.15%), Postives = 64/122 (52.46%), Query Frame = 3 
Query:    3 LAAADKERMKSELAAAGLTRLPAKNSNASVSVPGGPTSLVLPLARVRKTVRLDPAVGNISKEGLLLVTKATEVFMAFMADHAWKIGRQTGRKSVRPCDVADFVFASPEMYWLKDEFRDERSS 368
            +AA DK R + EL        P  N   SV       + + PL RVRK V+ DP VG +S++ LL ++KA+E+F  F+   +++      ++ ++  DV   +  +  + WL+++F D R S
Sbjct:   56 IAAKDKARYEQEL-----LDNPQVNDEPSVEQKDS-NACIYPLGRVRKMVQCDPDVGKVSRDALLAISKASELFAQFLGTKSYEQALYRNKRQLKASDVTRTIQTTASLDWLREDFPDVRPS 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11978.1728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIR0_ECTSI1.240e-7883.33HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KCQ8_9PHAE9.160e-1761.36Reverse transcriptase domain-containing protein n=... [more]
A0A7S2FZW8_9STRA3.090e-1244.87Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835ZK76_9STRA7.420e-1038.55Histone-like transcription factor (CBF/NF-Y) and a... [more]
W4H0Q5_9STRA7.560e-1034.34HMG box domain-containing protein n=2 Tax=Aphanomy... [more]
A0A1V9ZFH9_9STRA1.540e-931.93HMG box domain-containing protein n=1 Tax=Achlya h... [more]
A0A1V9ZYX4_9STRA8.430e-934.78HMG box domain-containing protein n=1 Tax=Thrausto... [more]
A0A2D4BV20_PYTIN1.990e-828.49HMG box domain-containing protein n=1 Tax=Pythium ... [more]
A0A8K1FA27_PYTOL7.540e-829.63Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GZX8_PHYRM7.560e-831.15HMG box domain-containing protein n=1 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11978contigH-canaliculatus_F_contig11978:749..3418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue4.6e-10
Seed eggNOG ortholog157072.XP_008876230.1
Preferred nameHMGB2
KEGG rclassRC02795
KEGG koko:K03004,ko:K03506,ko:K08066,ko:K10802,ko:K11295,ko:K11296,ko:K11297,ko:K11656,ko:K15413
KEGG ReactionR00375,R00376,R00377,R00378,R00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko03030,ko03410,ko03420,ko04140,ko04217,ko04612,ko05152,ko05166,ko05168,ko05203,map00230,map00240,map01100,map03020,map03030,map03410,map03420,map04140,map04217,map04612,map05152,map05166,map05168,map05203
KEGG ModuleM00182,M00263
GOsGO:0000003,GO:0000122,GO:0000217,GO:0000228,GO:0000400,GO:0000401,GO:0000402,GO:0000405,GO:0000723,GO:0000737,GO:0000785,GO:0000790,GO:0000793,GO:0000902,GO:0000976,GO:0001067,GO:0001158,GO:0001530,GO:0001654,GO:0001667,GO:0001708,GO:0001773,GO:0001775,GO:0001776,GO:0001780,GO:0001786,GO:0001816,GO:0001817,GO:0001818,GO:0001819,GO:0001932,GO:0001934,GO:0001935,GO:0001936,GO:0001938,GO:0002053,GO:0002119,GO:0002164,GO:0002200,GO:0002218,GO:0002221,GO:0002224,GO:0002237,GO:0002250,GO:0002252,GO:0002253,GO:0002262,GO:0002263,GO:0002270,GO:0002274,GO:0002275,GO:0002281,GO:0002283,GO:0002285,GO:0002286,GO:0002287,GO:0002292,GO:0002293,GO:0002294,GO:0002312,GO:0002322,GO:0002366,GO:0002376,GO:0002407,GO:0002437,GO:0002443,GO:0002444,GO:0002446,GO:0002460,GO:0002520,GO:0002521,GO:0002562,GO:0002643,GO:0002682,GO:0002683,GO:0002684,GO:0002685,GO:0002687,GO:0002688,GO:0002690,GO:0002694,GO:0002695,GO:0002696,GO:0002697,GO:0002703,GO:0002706,GO:0002709,GO:0002755,GO:0002757,GO:0002758,GO:0002759,GO:0002764,GO:0002790,GO:0002791,GO:0002793,GO:0002819,GO:0002822,GO:0002831,GO:0002832,GO:0002834,GO:0002837,GO:0002840,GO:0002920,GO:0002921,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003681,GO:0003682,GO:0003684,GO:0003690,GO:0003697,GO:0003700,GO:0003723,GO:0003725,GO:0003727,GO:0003824,GO:0003887,GO:0005102,GO:0005125,GO:0005178,GO:0005488,GO:0005515,GO:0005539,GO:0005543,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005730,GO:0005737,GO:0005768,GO:0005769,GO:0005829,GO:0005886,GO:0005981,GO:0006109,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006266,GO:0006268,GO:0006275,GO:0006281,GO:0006282,GO:0006284,GO:0006308,GO:0006309,GO:0006310,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006338,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006810,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006897,GO:0006909,GO:0006915,GO:0006921,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006954,GO:0006955,GO:0006974,GO:0006996,GO:0006997,GO:0007010,GO:0007154,GO:0007162,GO:0007165,GO:0007166,GO:0007204,GO:0007267,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007346,GO:0007379,GO:0007389,GO:0007399,GO:0007423,GO:0007444,GO:0007548,GO:0007623,GO:0008047,GO:0008097,GO:0008104,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008156,GO:0008201,GO:0008219,GO:0008283,GO:0008284,GO:0008289,GO:0008301,GO:0008348,GO:0008406,GO:0008584,GO:0008622,GO:0008623,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009266,GO:0009306,GO:0009408,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009791,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009968,GO:0009986,GO:0009987,GO:0010033,GO:0010243,GO:0010464,GO:0010468,GO:0010469,GO:0010506,GO:0010508,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010594,GO:0010595,GO:0010596,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010631,GO:0010632,GO:0010633,GO:0010634,GO:0010646,GO:0010647,GO:0010648,GO:0010675,GO:0010676,GO:0010720,GO:0010858,GO:0010906,GO:0010907,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0010975,GO:0010976,GO:0012501,GO:0012505,GO:0014070,GO:0014910,GO:0014911,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016055,GO:0016192,GO:0016444,GO:0016477,GO:0016604,GO:0016605,GO:0016740,GO:0016772,GO:0016779,GO:0016829,GO:0017025,GO:0017055,GO:0018130,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019439,GO:0019725,GO:0019843,GO:0019887,GO:0019899,GO:0019904,GO:0019953,GO:0019955,GO:0019956,GO:0019958,GO:0022008,GO:0022407,GO:0022408,GO:0022409,GO:0022411,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030003,GO:0030029,GO:0030030,GO:0030036,GO:0030097,GO:0030098,GO:0030100,GO:0030141,GO:0030154,GO:0030155,GO:0030162,GO:0030182,GO:0030217,GO:0030234,GO:0030262,GO:0030295,GO:0030323,GO:0030324,GO:0030334,GO:0030335,GO:0030336,GO:0030545,GO:0030595,GO:0031010,GO:0031099,GO:0031100,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031333,GO:0031344,GO:0031346,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031410,GO:0031491,GO:0031493,GO:0031497,GO:0031532,GO:0031960,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032069,GO:0032070,GO:0032071,GO:0032072,GO:0032075,GO:0032101,GO:0032102,GO:0032103,GO:0032147,GO:0032200,GO:0032268,GO:0032270,GO:0032386,GO:0032387,GO:0032392,GO:0032423,GO:0032425,GO:0032479,GO:0032481,GO:0032496,GO:0032501,GO:0032502,GO:0032504,GO:0032507,GO:0032508,GO:0032640,GO:0032642,GO:0032647,GO:0032648,GO:0032649,GO:0032651,GO:0032652,GO:0032653,GO:0032655,GO:0032675,GO:0032677,GO:0032680,GO:0032689,GO:0032722,GO:0032727,GO:0032728,GO:0032731,GO:0032732,GO:0032733,GO:0032735,GO:0032755,GO:0032757,GO:0032760,GO:0032868,GO:0032872,GO:0032874,GO:0032879,GO:0032880,GO:0032881,GO:0032940,GO:0032943,GO:0032944,GO:0032946,GO:0032989,GO:0032991,GO:0033032,GO:0033034,GO:0033036,GO:0033151,GO:0033157,GO:0033218,GO:0033365,GO:0033554,GO:0033674,GO:0033993,GO:0034061,GO:0034097,GO:0034121,GO:0034123,GO:0034134,GO:0034135,GO:0034137,GO:0034142,GO:0034143,GO:0034145,GO:0034162,GO:0034163,GO:0034165,GO:0034284,GO:0034341,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034728,GO:0034774,GO:0035218,GO:0035282,GO:0035295,GO:0035326,GO:0035710,GO:0035711,GO:0035767,GO:0035868,GO:0036230,GO:0036336,GO:0040011,GO:0040012,GO:0040013,GO:0040017,GO:0040025,GO:0042056,GO:0042088,GO:0042093,GO:0042100,GO:0042102,GO:0042104,GO:0042110,GO:0042113,GO:0042116,GO:0042119,GO:0042127,GO:0042129,GO:0042221,GO:0042277,GO:0042325,GO:0042327,GO:0042330,GO:0042393,GO:0042493,GO:0042575,GO:0042592,GO:0042742,GO:0042766,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043277,GO:0043280,GO:0043281,GO:0043299,GO:0043312,GO:0043367,GO:0043370,GO:0043371,GO:0043388,GO:0043408,GO:0043410,GO:0043434,GO:0043467,GO:0043470,GO:0043471,GO:0043535,GO:0043536,GO:0043537,GO:0043542,GO:0043549,GO:0043565,GO:0043900,GO:0043901,GO:0043933,GO:0044085,GO:0044087,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044378,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044459,GO:0044464,GO:0044703,GO:0044877,GO:0045055,GO:0045063,GO:0045087,GO:0045088,GO:0045089,GO:0045121,GO:0045137,GO:0045165,GO:0045184,GO:0045185,GO:0045321,GO:0045322,GO:0045577,GO:0045578,GO:0045580,GO:0045581,GO:0045595,GO:0045596,GO:0045597,GO:0045619,GO:0045620,GO:0045637,GO:0045638,GO:0045639,GO:0045646,GO:0045648,GO:0045652,GO:0045654,GO:0045661,GO:0045663,GO:0045664,GO:0045666,GO:0045739,GO:0045765,GO:0045766,GO:0045785,GO:0045787,GO:0045806,GO:0045819,GO:0045859,GO:0045860,GO:0045862,GO:0045892,GO:0045893,GO:0045898,GO:0045913,GO:0045931,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0046006,GO:0046328,GO:0046330,GO:0046483,GO:0046546,GO:0046631,GO:0046632,GO:0046634,GO:0046636,GO:0046637,GO:0046639,GO:0046649,GO:0046651,GO:0046661,GO:0046700,GO:0046822,GO:0046823,GO:0046825,GO:0046826,GO:0046903,GO:0046982,GO:0046983,GO:0048018,GO:0048232,GO:0048468,GO:0048471,GO:0048511,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048545,GO:0048569,GO:0048583,GO:0048584,GO:0048585,GO:0048608,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048771,GO:0048856,GO:0048869,GO:0048870,GO:0048872,GO:0048878,GO:0050663,GO:0050670,GO:0050671,GO:0050673,GO:0050678,GO:0050679,GO:0050704,GO:0050706,GO:0050707,GO:0050708,GO:0050714,GO:0050715,GO:0050716,GO:0050718,GO:0050727,GO:0050764,GO:0050765,GO:0050767,GO:0050769,GO:0050776,GO:0050777,GO:0050778,GO:0050786,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050829,GO:0050830,GO:0050831,GO:0050839,GO:0050863,GO:0050864,GO:0050865,GO:0050866,GO:0050867,GO:0050868,GO:0050869,GO:0050870,GO:0050896,GO:0050900,GO:0050918,GO:0050920,GO:0050921,GO:0050926,GO:0050927,GO:0050930,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051051,GO:0051052,GO:0051053,GO:0051054,GO:0051093,GO:0051094,GO:0051098,GO:0051099,GO:0051101,GO:0051103,GO:0051105,GO:0051106,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051222,GO:0051223,GO:0051224,GO:0051234,GO:0051235,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051249,GO:0051250,GO:0051251,GO:0051252,GO:0051253,GO:0051254,GO:0051270,GO:0051271,GO:0051272,GO:0051276,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051384,GO:0051450,GO:0051457,GO:0051480,GO:0051641,GO:0051651,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051861,GO:0051960,GO:0051962,GO:0052547,GO:0052548,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060205,GO:0060249,GO:0060255,GO:0060260,GO:0060284,GO:0060326,GO:0060341,GO:0060429,GO:0060541,GO:0060548,GO:0060627,GO:0060633,GO:0061041,GO:0061458,GO:0061695,GO:0062012,GO:0062013,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070182,GO:0070201,GO:0070302,GO:0070304,GO:0070372,GO:0070374,GO:0070491,GO:0070555,GO:0070603,GO:0070661,GO:0070663,GO:0070665,GO:0070727,GO:0070873,GO:0070875,GO:0070887,GO:0071103,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071345,GO:0071347,GO:0071396,GO:0071637,GO:0071639,GO:0071640,GO:0071642,GO:0071675,GO:0071677,GO:0071702,GO:0071704,GO:0071705,GO:0071706,GO:0071824,GO:0071840,GO:0071897,GO:0071944,GO:0072091,GO:0072341,GO:0072503,GO:0072507,GO:0072595,GO:0080090,GO:0080134,GO:0080135,GO:0090025,GO:0090026,GO:0090087,GO:0090130,GO:0090132,GO:0090303,GO:0090304,GO:0090305,GO:0090317,GO:0097100,GO:0097159,GO:0097194,GO:0097350,GO:0097367,GO:0097458,GO:0097708,GO:0098542,GO:0098589,GO:0098657,GO:0098771,GO:0098772,GO:0098796,GO:0098797,GO:0098805,GO:0098857,GO:0099503,GO:0101002,GO:0120025,GO:0120035,GO:0120036,GO:0140097,GO:0140110,GO:0198738,GO:1901222,GO:1901224,GO:1901342,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1901652,GO:1901681,GO:1901698,GO:1901700,GO:1901701,GO:1902041,GO:1902042,GO:1902044,GO:1902105,GO:1902106,GO:1902107,GO:1902494,GO:1902531,GO:1902533,GO:1902679,GO:1902680,GO:1902739,GO:1902741,GO:1903034,GO:1903036,GO:1903037,GO:1903038,GO:1903039,GO:1903506,GO:1903507,GO:1903508,GO:1903530,GO:1903532,GO:1903555,GO:1903557,GO:1903670,GO:1903672,GO:1903706,GO:1903707,GO:1903708,GO:1903827,GO:1903828,GO:1904018,GO:1904813,GO:1904949,GO:1904950,GO:1904951,GO:1905114,GO:1905562,GO:1905564,GO:1990234,GO:1990774,GO:1990837,GO:2000026,GO:2000112,GO:2000113,GO:2000116,GO:2000142,GO:2000143,GO:2000145,GO:2000146,GO:2000147,GO:2000425,GO:2000426,GO:2000514,GO:2000515,GO:2000778,GO:2000819,GO:2001020,GO:2001022,GO:2001056,GO:2001141,GO:2001198,GO:2001200,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG5208@1,COG5648@1,KOG0381@2759,KOG1657@2759
EC2.7.7.7
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03000,ko03021,ko03032,ko03036,ko03400,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDPB3 class protein with histone-like transcription factor (NF-YC subunit) and high mobility group domains
Ec32 orthologEc-03_001170.1
Exons4
Model size968
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11978.1728.1prot_H-canaliculatus_F_contig11978.1728.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11978 1229..3392 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928901.3539126-UTR-H-canaliculatus_F_contig11978:748..12281622928901.3539126-UTR-H-canaliculatus_F_contig11978:748..1228Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11978 749..1228 -
1696845606.9226615-UTR-H-canaliculatus_F_contig11978:748..12281696845606.9226615-UTR-H-canaliculatus_F_contig11978:748..1228Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11978 749..1228 -
1622928901.4603832-UTR-H-canaliculatus_F_contig11978:3392..34181622928901.4603832-UTR-H-canaliculatus_F_contig11978:3392..3418Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11978 3393..3418 -
1696845606.9912496-UTR-H-canaliculatus_F_contig11978:3392..34181696845606.9912496-UTR-H-canaliculatus_F_contig11978:3392..3418Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11978 3393..3418 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928901.3808148-CDS-H-canaliculatus_F_contig11978:1228..13521622928901.3808148-CDS-H-canaliculatus_F_contig11978:1228..1352Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11978 1229..1352 -
1696845606.9459023-CDS-H-canaliculatus_F_contig11978:1228..13521696845606.9459023-CDS-H-canaliculatus_F_contig11978:1228..1352Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11978 1229..1352 -
1622928901.4033947-CDS-H-canaliculatus_F_contig11978:1688..17861622928901.4033947-CDS-H-canaliculatus_F_contig11978:1688..1786Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11978 1689..1786 -
1696845606.9571292-CDS-H-canaliculatus_F_contig11978:1688..17861696845606.9571292-CDS-H-canaliculatus_F_contig11978:1688..1786Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11978 1689..1786 -
1622928901.4206843-CDS-H-canaliculatus_F_contig11978:2670..28571622928901.4206843-CDS-H-canaliculatus_F_contig11978:2670..2857Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11978 2671..2857 -
1696845606.9703944-CDS-H-canaliculatus_F_contig11978:2670..28571696845606.9703944-CDS-H-canaliculatus_F_contig11978:2670..2857Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11978 2671..2857 -
1622928901.4378014-CDS-H-canaliculatus_F_contig11978:3339..33921622928901.4378014-CDS-H-canaliculatus_F_contig11978:3339..3392Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11978 3340..3392 -
1696845606.980899-CDS-H-canaliculatus_F_contig11978:3339..33921696845606.980899-CDS-H-canaliculatus_F_contig11978:3339..3392Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11978 3340..3392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11978.1728.1

>prot_H-canaliculatus_F_contig11978.1728.1 ID=prot_H-canaliculatus_F_contig11978.1728.1|Name=mRNA_H-canaliculatus_F_contig11978.1728.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=154bp
MKSELAAAGLTRLPAKNSNASVSVPGGPTSLVLPLARVRKTVRLDPAVGN
ISKEGLLLVTKATEVFMAFMADHAWKIGRQTGRKSVRPCDVADFVFASPE
MYWLKDEFRDERSSVKKRSKPEASGTRLAGAEKAGVTAVPKAANPITSFF
KKA*
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mRNA from alignment at H-canaliculatus_F_contig11978:749..3418-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11978.1728.1 ID=mRNA_H-canaliculatus_F_contig11978.1728.1|Name=mRNA_H-canaliculatus_F_contig11978.1728.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2670bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11978:749..3418- (Hapterophycus canaliculatus Oshoro5f female)
AGCTGGCAGCGGCGGACAAGGAGCGGATGAAAAGCGAGCTAGCGGCGGCG
GGGCTGACCAGGCTGCCGGCCAAAAACAGGTGATTCATCTGCCACCTCTT
CTTTTCTTTCTCAGCAAGACTTGATGCAGATGTCCGTCTGGGTAACTCCG
CACCGTAAAAGGAGTGAGTCGCTTCCAGGGGCGGCCTAGTGTGCTGAGAG
ACTGTCCGACATACGAACTCAAGACCTTGCCCGTATGCGCGAAGTGAAGA
TGAGGTCGACGCTGATCACGCGTCCTTGCCTCGATGCTCGCCTCTGCACC
CGTCCTTTCGAGCCACGTTGTTATCTCAGCTCCTCGGGATATTTCACACC
TCGTACATGTCAAGCTCGTGGCGCACGGCCCAATCCTTCCTCGTAAGGGC
AAGAAAAGCGTCAGCGCTGCGTCCTCACCCGCCATCATCAAGCGGTTCCA
CCTCGGAACCTCGCTTCCACAAACAGCACCGCATTGTAGGTCCACGCCCC
AACCCCCCTCGGCACCGACGCCCCCCACGCCCTGCCCTCTTTCCCGCCCC
CCGTTTGGTAGTAACGCCTCCGTATCCGTGCCGGGGGGACCGACGAGCCT
GGTGCTGCCCCTTGCGAGAGTTCGCAAGACCGTCCGGCTGGACCCTGCGG
TGGGGAACATATCGAAGGAGGGGCTGCTACTGGTGACCAAGGCTACCGAG
GTGTTCATGGCCTTCATGGCCGACCACGCGTGGAAGATCGGGAGACAGGT
ACTTGTGTAAAGGTTTGTTGTAGTTGTTGTTGTTGTTGTTCTTGTTGTTG
TTGTTGTTGTTGTTGATCATGATGTTGTCGTTGTCGTTGTGGTTATGGTT
GTGGTTGTGGTTATGGTCATGGTTGTGGTTGTGGTTGTTGTGGCTCCTGC
TCTGGCTTTTGTTGTTGAGCCTGGCGTCGGGGTTCATGCTGCTGGTATCG
TCGGGACCAAGTATTGGACAGGGCGACATGGAAGACCGAAGACGTGCGAC
ACGGCACGGCCACAACCGATCCTTCGGCAAGCAAGCGCGCGCGTCCAGCA
GGATAAAGAGAATAAAAAAATACACCAGACAATCTGAAGGTCCACGAATT
GACACCTCTTAGGCTTTCAAAGCGACTTTTACGAAAGGCCTGTGTACTTG
GACTGCGTCGGAATGGGCGTTTCTGTCAGCTGCGAAGTCTTCCACAATGG
CTGCATCACAGGACGTTCAATCGGCGACCAACGAATGATTCCCCTGGGTA
GGGTTTCGGCAGCTCCTTGCTCGAGAGAGCTGTGCACTCAGGCCTTTCTG
AGTAGTTGGTGGAGAAAAGAGACCTTGCGCCCCCCTGCCCCTGTGGGCAT
CGACCGCTTTTCAACTTCTCCCGTCATTCGCTTTCCTCTTCCAAGAAGAG
ACGCAAGCCCGAGCGTCCCCCCTATTGCGACCAAAATCAAAACAACAACC
AAAAGTCCTATTTTGGCACCTCTCCCCTGCTCCATCCATACCTTACAAGT
CAACGGCGAAGACAAAGACTCCGCCCCTGCCCCTTCCACCCCCGACCGTC
TGGTCCATATCGAACCCTCGCCCTCCCCCTCCTCCCCCGTCCCCCCACTG
CGTTCCTCTCCCGCACTTTGATTGCTGCCTAGACGGGGAGAAAGTCCGTG
CGCCCGTGCGATGTGGCGGACTTCGTGTTCGCATCTCCGGAGATGTACTG
GCTCAAGGACGAGTTTCGCGACGAGCGCAGGTACGTCGCTCGTTTCATCT
TGGCGTCGGACGTGGACTTTGTCTTCCCTAAGGAATGGAAACGGATCGAT
GGCATCTTCCTGCCTTCGGGGGTCGTCCTTTATTTCTAGGAAAGGGGTCA
ACAATCCGGGCCACTAGACCTAACAATTTTTCTAGCGTCTTGGTCAACAT
GATTTTTTTAGGTGTTGTGTGTTTGAAGGCGATATTGCTACCGCAGCAGG
GTGGCCGGATCTGGTACCTCCGACGACAGTCACGTCAGCACCGAACAGGA
GCGTGCTTTCTGTTCGCGGTCTAACATCTGTGGCTGCCAAACCTACCTAT
CCGTTGCGCGTGCCAGCTCCGTGAAGAAGCGAAGCAAGCCTGAGGCCAGC
GGCACGAGGTTGGCGGGGGCTGAGAAAGCTGGCGTCACGGCCGTTCCCAA
GGCGGCGAATCCCATCACTTCTTTCTTCAAGAAGGCCTGATCGTGTGTTG
GGGCCTCGATGACGATCGATCTTGATGGTCATGTCACTGTGGGCGTAAAC
AGGCGATTAATCCTCTCACAGTATTACTCTGAGGAGGCTCGATCGTGTGA
TGGCTTCGGTGATGACGTGGACGGGCATCATGGGCATGACGGTGCTGGTC
ATTTTTAAGGAACTGGGTTTTGCTCCGCTGTTGATCTCGTTGTTCCCAAT
GGGGCGCCGGTGGTGGTAGTGCCGACGGTTCACTGCGGTGTTGTTTTTAC
GGCCGGATTTGCTCGCAAACCAGTGATTCGTGATGACCATGGAGGGTGCA
AATTCTTCATGCCGGGGCTGGGGCTCATCGCGATCGTGGAGGTATCTGTA
CAGGGGAAAGGCTGAAACGCTCTAGGAGATCCTCTTCGGAACCCGTTTTC
GGACACACGGTCGGAGGTTGTGGCAGGGGCTGTGACTGACAGCGCTGTTC
GCAGACACAGTAGTCGAGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11978:749..3418-

>mRNA_H-canaliculatus_F_contig11978.1728.1 ID=mRNA_H-canaliculatus_F_contig11978.1728.1|Name=mRNA_H-canaliculatus_F_contig11978.1728.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=924bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11978:749..3418- (Hapterophycus canaliculatus Oshoro5f female)
ATGAAAAGCGAGCTAGCGGCGGCGGGGCTGACCAGGCTGCCGGCCAAAAA
CAGATGAAAAGCGAGCTAGCGGCGGCGGGGCTGACCAGGCTGCCGGCCAA
AAACAGTAACGCCTCCGTATCCGTGCCGGGGGGACCGACGAGCCTGGTGC
TGCCCCTTGCGAGAGTTCGCAAGACCGTCCGGCTGGACCCTGCGGTGGGG
AACATATCGAAGGAGGGGCTGCTACTGGTGACCAAGGCTACCGAGGTGTT
CATGGCCTTCATGGCCGACCACGCGTGGAAGATCGGGAGACAGTAACGCC
TCCGTATCCGTGCCGGGGGGACCGACGAGCCTGGTGCTGCCCCTTGCGAG
AGTTCGCAAGACCGTCCGGCTGGACCCTGCGGTGGGGAACATATCGAAGG
AGGGGCTGCTACTGGTGACCAAGGCTACCGAGGTGTTCATGGCCTTCATG
GCCGACCACGCGTGGAAGATCGGGAGACAGACGGGGAGAAAGTCCGTGCG
CCCGTGCGATGTGGCGGACTTCGTGTTCGCATCTCCGGAGATGTACTGGC
TCAAGGACGAGTTTCGCGACGAGCGCAGACGGGGAGAAAGTCCGTGCGCC
CGTGCGATGTGGCGGACTTCGTGTTCGCATCTCCGGAGATGTACTGGCTC
AAGGACGAGTTTCGCGACGAGCGCAGCTCCGTGAAGAAGCGAAGCAAGCC
TGAGGCCAGCGGCACGAGGTTGGCGGGGGCTGAGAAAGCTGGCGTCACGG
CCGTTCCCAAGGCGGCGAATCCCATCACTTCTTTCTTCAAGAAGGCCTGA
CTCCGTGAAGAAGCGAAGCAAGCCTGAGGCCAGCGGCACGAGGTTGGCGG
GGGCTGAGAAAGCTGGCGTCACGGCCGTTCCCAAGGCGGCGAATCCCATC
ACTTCTTTCTTCAAGAAGGCCTGA
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