mRNA_H-canaliculatus_F_contig11976.1727.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11976.1727.1
Unique NamemRNA_H-canaliculatus_F_contig11976.1727.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11976.1727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11976contigH-canaliculatus_F_contig11976:144..731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size588
Cds size375
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928901.2795098-CDS-H-canaliculatus_F_contig11976:143..5181622928901.2795098-CDS-H-canaliculatus_F_contig11976:143..518Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11976 144..518 +
1696845606.8997707-CDS-H-canaliculatus_F_contig11976:143..5181696845606.8997707-CDS-H-canaliculatus_F_contig11976:143..518Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11976 144..518 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928901.3048477-UTR-H-canaliculatus_F_contig11976:518..7311622928901.3048477-UTR-H-canaliculatus_F_contig11976:518..731Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11976 519..731 +
1696845606.910162-UTR-H-canaliculatus_F_contig11976:518..7311696845606.910162-UTR-H-canaliculatus_F_contig11976:518..731Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11976 519..731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11976.1727.1prot_H-canaliculatus_F_contig11976.1727.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11976 144..518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11976.1727.1

>prot_H-canaliculatus_F_contig11976.1727.1 ID=prot_H-canaliculatus_F_contig11976.1727.1|Name=mRNA_H-canaliculatus_F_contig11976.1727.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=125bp
MRGRRAKKERLRTIEILSISPCGFAVKWDGPRSRTGRQGYAFRGRLERRL
VQHLVYHKSVFSRAFACNQGSSYGNVPRSSTQRKPFAVALLISDGFEFFQ
AYGDVANYCGRNRSAHVRDFRASA*
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mRNA from alignment at H-canaliculatus_F_contig11976:144..731+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11976.1727.1 ID=mRNA_H-canaliculatus_F_contig11976.1727.1|Name=mRNA_H-canaliculatus_F_contig11976.1727.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=588bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11976:144..731+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGGGGGCGCCGCGCAAAAAAGGAGAGGTTGCGGACAATTGAAATCCT
TTCGATATCCCCCTGCGGGTTTGCCGTAAAGTGGGACGGGCCACGTTCTC
GCACCGGCAGACAAGGGTATGCATTCAGGGGCCGGCTCGAGAGGCGTTTG
GTGCAGCACTTGGTGTACCACAAGTCCGTGTTCAGTCGTGCCTTCGCCTG
CAATCAGGGCTCTTCTTACGGGAACGTCCCCCGCTCCTCCACACAACGAA
AACCGTTTGCGGTGGCTCTGCTGATCAGCGATGGCTTCGAGTTTTTCCAA
GCGTACGGTGACGTCGCCAACTACTGTGGGAGAAACAGATCTGCACATGT
ACGTGATTTTCGCGCAAGTGCCTGAAAAGTTGGTTGACAAAGAGCAATCG
GTGGTGCTGTGTTTGCATGGAGCTCTCACAGGGGTTGGCAAGTAAGCGCA
CCGTGGCGTTACCGTTCTGTGTTGAGGCGACGTTTCCTGTTTCTGACGAC
GTGAAGCATTTTCCACAAGAATAGGGTCTGGTCACGTCGCCGTGCGAAGG
ACACGAACATCTCAACACACGAGCTGAGTTGATTCAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11976:144..731+

>mRNA_H-canaliculatus_F_contig11976.1727.1 ID=mRNA_H-canaliculatus_F_contig11976.1727.1|Name=mRNA_H-canaliculatus_F_contig11976.1727.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11976:144..731+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGGGGGCGCCGCGCAAAAAAGGAGAGGTTGCGGACAATTGAAATCCT
TTCGATATCCCCCTGCGGGTTTGCCGTAAAGTGGGACGGGCCACGTTCTC
GCACCGGCAGACAAGGGTATGCATTCAGGGGCCGGCTCGAGAGGCGTTTG
GTGCAGCACTTGGTGTACCACAAGTCCGTGTTCAGTCGTGCCTTCGCCTG
CAATCAGGGCTCTTCTTACGGGAACGTCCCCCGCTCCTCCACACAACGAA
AACCGTTTGCGGTGGCTCTGCTGATCAGCGATGGCTTCGAGTTTTTCCAA
GCGTACGGTGACGTCGCCAACTACTGTGGGAGAAACAGATCTGCACATGT
ACGTGATTTTCGCGCAAGTGCCTGAATGAGGGGGCGCCGCGCAAAAAAGG
AGAGGTTGCGGACAATTGAAATCCTTTCGATATCCCCCTGCGGGTTTGCC
GTAAAGTGGGACGGGCCACGTTCTCGCACCGGCAGACAAGGGTATGCATT
CAGGGGCCGGCTCGAGAGGCGTTTGGTGCAGCACTTGGTGTACCACAAGT
CCGTGTTCAGTCGTGCCTTCGCCTGCAATCAGGGCTCTTCTTACGGGAAC
GTCCCCCGCTCCTCCACACAACGAAAACCGTTTGCGGTGGCTCTGCTGAT
CAGCGATGGCTTCGAGTTTTTCCAAGCGTACGGTGACGTCGCCAACTACT
GTGGGAGAAACAGATCTGCACATGTACGTGATTTTCGCGCAAGTGCCTGA
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