mRNA_H-canaliculatus_F_contig11972.1726.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11972.1726.1
Unique NamemRNA_H-canaliculatus_F_contig11972.1726.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11972.1726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11972contigH-canaliculatus_F_contig11972:1927..3322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size645
Cds size507
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11972.1726.1prot_H-canaliculatus_F_contig11972.1726.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11972 2064..3322 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928901.187758-UTR-H-canaliculatus_F_contig11972:1926..20631622928901.187758-UTR-H-canaliculatus_F_contig11972:1926..2063Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11972 1927..2063 +
1696845606.8494658-UTR-H-canaliculatus_F_contig11972:1926..20631696845606.8494658-UTR-H-canaliculatus_F_contig11972:1926..2063Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11972 1927..2063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928901.20189-CDS-H-canaliculatus_F_contig11972:2063..22851622928901.20189-CDS-H-canaliculatus_F_contig11972:2063..2285Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11972 2064..2285 +
1696845606.8589933-CDS-H-canaliculatus_F_contig11972:2063..22851696845606.8589933-CDS-H-canaliculatus_F_contig11972:2063..2285Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11972 2064..2285 +
1622928901.2221222-CDS-H-canaliculatus_F_contig11972:3037..33221622928901.2221222-CDS-H-canaliculatus_F_contig11972:3037..3322Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11972 3038..3322 +
1696845606.8691516-CDS-H-canaliculatus_F_contig11972:3037..33221696845606.8691516-CDS-H-canaliculatus_F_contig11972:3037..3322Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11972 3038..3322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11972.1726.1

>prot_H-canaliculatus_F_contig11972.1726.1 ID=prot_H-canaliculatus_F_contig11972.1726.1|Name=mRNA_H-canaliculatus_F_contig11972.1726.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=169bp
MAPDVGNTLTNKNQQSIGGGIENKDEPARFKGRRERPVVLRERRRPGGFR
PLGILLLVASLVQRSMAAGGGGFQGSGSRESGSAPPRPPSSYSNSPGTND
NESPAPSRGPRGALSPSMHARVSRPTAGAGEGGLRPGAGAGAEAARGRLA
RAAADASAGPLDRRAVLEH
back to top

mRNA from alignment at H-canaliculatus_F_contig11972:1927..3322+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11972.1726.1 ID=mRNA_H-canaliculatus_F_contig11972.1726.1|Name=mRNA_H-canaliculatus_F_contig11972.1726.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1396bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11972:1927..3322+ (Hapterophycus canaliculatus Oshoro5f female)
CAAAGGAGGGCAATATCAACTCCTGTAGAGCCGGCTCCGAGATTGCTCGC
GCCGCCGTGGACTCCATCATAGCCACAGCGTAGCGGAGATCCCTTCGATT
TTAACGCACATCTTGCCGTAGAGGATAGAACCCCAAAATGGCACCAGACG
TTGGAAACACCTTGACGAACAAAAATCAACAATCCATCGGCGGCGGTATC
GAAAACAAAGATGAGCCTGCCAGGTTCAAGGGCCGCAGGGAGAGGCCGGT
GGTGCTGCGGGAACGGAGGAGGCCTGGTGGCTTCAGACCATTAGGTATTC
TCCTGCTAGTGGCATCCTTGGTGCAGCGATCGATGGCTGCTGGCGGTGGT
GGCTTTCAGGTGACGCGGATTTTTTTTCAAAAATTGCGCTGTTCCCTCTG
GTGGACAGACCACAGACCCACCTGTCTTCCCTGCTCTCCTTCCCTCGCCT
GTCTGCCGCCGGACGCAGCCGGATAGTACCTGTCCAGACCCAAATCTGCG
TGTCTCCTCACTCCCCGCCGAGAGGCGCAGCGCAAAAAATACCAAGAAGC
ATCGCAGAACCCTGAGGCGTGGAGTACTTTTTATGGAAAGAGCACAGACG
AAAGATACGTGAGAGAGCTGCGCTGCGTTGGAACTCGCCTTCTCCGCCTG
CCGCGTGTCTCTCGTCCCGTTGCGGCAACGGAGCGAACGCGAAGCAACTC
GACAGCGTCATGTTCCAAACCCGAGTAGTGCCCTCGCTTCTTATCTTCAT
GTTGTTCCACACACAAGAGTGAAAAGGGAAGTGCCTGCCATGTCCATGAA
TACGCTGGCGGGCGGCCAAGGTAGGTTTGTGCATGTCCAATGGCGCACCC
ATTTTAGGGTTGGATCCCACCTTGGCGATGAATTTGCCCCGCATCAATCG
TACGCGATATCTGTGATACTCCGCAAATCGCCCTTTCTTGTTCCCAATAC
TTCAGGTGTTATTCCACGGTGTTGGTAGGATCAAAACGCACCAATGTATA
TTTTACGGCACTCTGCGGATGCACGCTGTTCGTCTCATCACGCCCCTGTT
GTTCGACCCAGGCCCTTGATTTTTCACCCCGTCCGCGCTCACCCCACCGT
GTTGACGGCAGGGAAGTGGCAGCCGCGAGAGCGGCAGCGCGCCACCTCGA
CCACCGTCATCTTATAGCAACAGCCCTGGCACGAACGACAACGAATCGCC
AGCACCATCGCGAGGGCCACGGGGGGCGCTGTCCCCATCGATGCACGCAA
GGGTCTCCAGGCCCACAGCGGGGGCGGGAGAAGGAGGGCTACGACCAGGA
GCAGGGGCGGGGGCAGAGGCGGCAAGGGGCAGGCTCGCGCGCGCGGCCGC
CGATGCGTCGGCCGGGCCGTTGGACAGGCGGGCGGTGCTGGAGCAC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11972:1927..3322+

>mRNA_H-canaliculatus_F_contig11972.1726.1 ID=mRNA_H-canaliculatus_F_contig11972.1726.1|Name=mRNA_H-canaliculatus_F_contig11972.1726.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1014bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11972:1927..3322+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCACCAGACGTTGGAAACACCTTGACGAACAAAAATCAACAATCCAT
CGGCGGCGGTATCGAAAACAAAGATGAGCCTGCCAGGTTCAAGGGCCGCA
GGGAGAGGCCGGTGGTGCTGCGGGAACGGAGGAGGCCTGGTGGCTTCAGA
CCATTAGGTATTCTCCTGCTAGTGGCATCCTTGGTGCAGCGATCGATGGC
TGCTGGCGGTGGTGGCTTTCAGATGGCACCAGACGTTGGAAACACCTTGA
CGAACAAAAATCAACAATCCATCGGCGGCGGTATCGAAAACAAAGATGAG
CCTGCCAGGTTCAAGGGCCGCAGGGAGAGGCCGGTGGTGCTGCGGGAACG
GAGGAGGCCTGGTGGCTTCAGACCATTAGGTATTCTCCTGCTAGTGGCAT
CCTTGGTGCAGCGATCGATGGCTGCTGGCGGTGGTGGCTTTCAGGGAAGT
GGCAGCCGCGAGAGCGGCAGCGCGCCACCTCGACCACCGTCATCTTATAG
CAACAGCCCTGGCACGAACGACAACGAATCGCCAGCACCATCGCGAGGGC
CACGGGGGGCGCTGTCCCCATCGATGCACGCAAGGGTCTCCAGGCCCACA
GCGGGGGCGGGAGAAGGAGGGCTACGACCAGGAGCAGGGGCGGGGGCAGA
GGCGGCAAGGGGCAGGCTCGCGCGCGCGGCCGCCGATGCGTCGGCCGGGC
CGTTGGACAGGCGGGCGGTGCTGGAGCACGGAAGTGGCAGCCGCGAGAGC
GGCAGCGCGCCACCTCGACCACCGTCATCTTATAGCAACAGCCCTGGCAC
GAACGACAACGAATCGCCAGCACCATCGCGAGGGCCACGGGGGGCGCTGT
CCCCATCGATGCACGCAAGGGTCTCCAGGCCCACAGCGGGGGCGGGAGAA
GGAGGGCTACGACCAGGAGCAGGGGCGGGGGCAGAGGCGGCAAGGGGCAG
GCTCGCGCGCGCGGCCGCCGATGCGTCGGCCGGGCCGTTGGACAGGCGGG
CGGTGCTGGAGCAC
back to top