mRNA_H-canaliculatus_F_contig11971.1725.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11971.1725.1
Unique NamemRNA_H-canaliculatus_F_contig11971.1725.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11971.1725.1 vs. uniprot
Match: D7G1G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G0_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 1.400e-79
Identity = 141/200 (70.50%), Postives = 157/200 (78.50%), Query Frame = 1 
Query:   91 EEDGAEGKETEKLQGVVRVVFSGLQPGDRQAAASVVRSLSKRHRPSGSGVCSTDSEPFTHLVIPDVSRRTLKVLFALCAPLSPNGRPPVVVTVAWLYASLEKGFFVDSEAFRPSRYAAPVVRRGAKLARPRITAAEQTRAARETRSISSHLLAGERVMLGGVTDPPPQVAENLVRATGAQIAYSVEDATLLFVESETQLE 690
            +E   EG+ ++KLQGVVRVVFSGLQPGDRQAAASVVRSLSK HRP GSGVC +D+E +THLVIPDVSRRTLKVLFALCAPLSPNGRPPVVVTVAWLY SLEKGFFVDSEAFRP RY  P +  G+        +A    A +E+RSISS LL GERVMLGG+ DPPP V E L  ATG QI + + DATLL  E+ET LE
Sbjct: 1587 QEGAGEGERSDKLQGVVRVVFSGLQPGDRQAAASVVRSLSKTHRPHGSGVCMSDAEAYTHLVIPDVSRRTLKVLFALCAPLSPNGRPPVVVTVAWLYESLEKGFFVDSEAFRPDRYRGPALEGGSVEGPEEGGSATAAGATKESRSISSSLLQGERVMLGGIADPPPSVVETLALATGGQITHCLHDATLLLAETETALE 1786
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11971.1725.1 vs. uniprot
Match: A0A6H5JHC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC6_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 8.140e-76
Identity = 134/195 (68.72%), Postives = 153/195 (78.46%), Query Frame = 1 
Query:  106 EGKETEKLQGVVRVVFSGLQPGDRQAAASVVRSLSKRHRPSGSGVCSTDSEPFTHLVIPDVSRRTLKVLFALCAPLSPNGRPPVVVTVAWLYASLEKGFFVDSEAFRPSRYAAPVVRRGAKLARPRITAAEQTRAARETRSISSHLLAGERVMLGGVTDPPPQVAENLVRATGAQIAYSVEDATLLFVESETQLE 690
            +G+  +KLQGVVRV FSG+QPGDRQAAASVVRSLS+ HRP GSGVC++D+E +THLVIPDVSRRTLKVLFALCAPLSPNGRPPVVVTVAWLY SLEKGFFVDSEAFRP RY    +  G+        +A    A +E+RSISS+LL GERVMLGG+ DPPP V ENL  ATG  I + + DATLL  E+E  LE
Sbjct: 1842 QGERNDKLQGVVRVAFSGMQPGDRQAAASVVRSLSRTHRPHGSGVCTSDAEAYTHLVIPDVSRRTLKVLFALCAPLSPNGRPPVVVTVAWLYESLEKGFFVDSEAFRPDRYRGLALEGGSVEGPEEGVSATAAGATKESRSISSNLLQGERVMLGGIVDPPPSVVENLAVATGGLITHCIHDATLLLAETEIALE 2036
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11971.1725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1G0_ECTSI1.400e-7970.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHC6_9PHAE8.140e-7668.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11971contigH-canaliculatus_F_contig11971:789..3917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size690
Cds size690
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11971.1725.1prot_H-canaliculatus_F_contig11971.1725.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11971 789..3917 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928901.0532594-CDS-H-canaliculatus_F_contig11971:788..8481622928901.0532594-CDS-H-canaliculatus_F_contig11971:788..848Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11971 789..848 -
1696845606.792025-CDS-H-canaliculatus_F_contig11971:788..8481696845606.792025-CDS-H-canaliculatus_F_contig11971:788..848Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11971 789..848 -
1622928901.06944-CDS-H-canaliculatus_F_contig11971:1386..15301622928901.06944-CDS-H-canaliculatus_F_contig11971:1386..1530Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11971 1387..1530 -
1696845606.8065398-CDS-H-canaliculatus_F_contig11971:1386..15301696845606.8065398-CDS-H-canaliculatus_F_contig11971:1386..1530Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11971 1387..1530 -
1622928901.0827928-CDS-H-canaliculatus_F_contig11971:1958..21381622928901.0827928-CDS-H-canaliculatus_F_contig11971:1958..2138Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11971 1959..2138 -
1696845606.8177676-CDS-H-canaliculatus_F_contig11971:1958..21381696845606.8177676-CDS-H-canaliculatus_F_contig11971:1958..2138Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11971 1959..2138 -
1622928901.096013-CDS-H-canaliculatus_F_contig11971:2763..28891622928901.096013-CDS-H-canaliculatus_F_contig11971:2763..2889Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11971 2764..2889 -
1696845606.8289893-CDS-H-canaliculatus_F_contig11971:2763..28891696845606.8289893-CDS-H-canaliculatus_F_contig11971:2763..2889Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11971 2764..2889 -
1622928901.1103835-CDS-H-canaliculatus_F_contig11971:3737..39171622928901.1103835-CDS-H-canaliculatus_F_contig11971:3737..3917Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11971 3738..3917 -
1696845606.8393595-CDS-H-canaliculatus_F_contig11971:3737..39171696845606.8393595-CDS-H-canaliculatus_F_contig11971:3737..3917Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11971 3738..3917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11971.1725.1

>prot_H-canaliculatus_F_contig11971.1725.1 ID=prot_H-canaliculatus_F_contig11971.1725.1|Name=mRNA_H-canaliculatus_F_contig11971.1725.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=230bp
GGGGGAEGGGGGHGGGGRRRGWGGGGGAGKEEDGAEGKETEKLQGVVRVV
FSGLQPGDRQAAASVVRSLSKRHRPSGSGVCSTDSEPFTHLVIPDVSRRT
LKVLFALCAPLSPNGRPPVVVTVAWLYASLEKGFFVDSEAFRPSRYAAPV
VRRGAKLARPRITAAEQTRAARETRSISSHLLAGERVMLGGVTDPPPQVA
ENLVRATGAQIAYSVEDATLLFVESETQLE
back to top

mRNA from alignment at H-canaliculatus_F_contig11971:789..3917-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11971.1725.1 ID=mRNA_H-canaliculatus_F_contig11971.1725.1|Name=mRNA_H-canaliculatus_F_contig11971.1725.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3129bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11971:789..3917- (Hapterophycus canaliculatus Oshoro5f female)
GGGGGGGGGGGCGGGGCGGAGGGGGGGGGCGGGGGGCACGGAGGGGGGGG
GAGGAGGAGGGGGTGGGGGGGGGGAGGGGGGGCGGGGAAGGAGGAAGACG
GCGCGGAGGGGAAGGAGACGGAGAAGCTGCAGGGGGTGGTGCGGGTGGTG
TTCTCTGGCTTGCAGCCGGGGGACCGGCAGGTGCGATGGAGAACGGGGAC
GGTCGGACGCGTTGCGATGAGCGGACGGAAAATAAAAAAATGTGTTATTT
TGATCGGCAGCGGCCACCGCAGTCAGTCAGACTGAGGTACATGAACGTCG
ACCAGAGGCCGGTCAATGCCTGCTTCAGTGCGATAGCCTCGTCGGGCAAC
TCCAGTGCTGAGGTTATGGCGCTTTCGTGTACAAATGACTTCGGGTGTGG
AGCGCGTTTCTTGGGAATTTACTAGGCCACGAGCATTGACGGTACACGGG
GCCCCTTTTTTGATACAGGTATCTACGAAGATGTAATCGGGGCAACGTTC
GCCGCTTCGGGGGTTCTTCTTGCGCTCCACCCACCGCCATCACACTGCAC
TACCCAGCGGCTGGTTGCGGTTTCGATCAAAACCTAAAATTGTTGTCGGT
GCCCCTCCTTCGGCGATCCCTAGATACGTACCCTACTGCTGGACCCATCG
CACGATCCATTTCGATACCGTTGTCCGCAGCCTTTTCGTCGCCACGAGGG
TCGTGTGTGTCGTATGTGTCGTGTGTGACGAGTCGTCCTTCGCGCTCCGT
TCGGTAGACGCGGTCCGTTCGGTAGACGCGCGGAGCAGTCCGACGCGATG
GCTCCCTCGTCACATCAATTGTTCTCCTCCTTCTTCCTGCGTGCAGCGGC
TTCCGCGGCTTGCTGGGACGCCTTCCCGTCGGCGTCCCGCCGCGTTACGA
CAGATGTCGCTCTTGCCGGCGAGCGTTGCCGCGCACGCCAATCATCGCTC
CCCTCAACTCACAAACCCTTCTCCTGTTTCGCCCCCCCGCCCTCCCCTCC
CCCCTTATGCCAACCTCCCGCCTCGCAGGCGGCGGCGAGCGTGGTGCGAT
CTCTCTCCAAGAGGCATCGCCCCTCCGGCTCCGGAGTCTGTTCGACTGAC
TCCGAGCCTTTCACTCATCTCGTTATCCCCGATGTGTCCCGCAGGACTCT
CAAGGTGCGCGGTTTTCGCCTTTTCCGTTTTTTTGGGAGGCGTGTTTCGA
CGGCTGTTTCCGGCATTCGTTCCTTCGAGACGACGAGCGGGAAGAGTCCC
CGAATGAAAATGTTCCTGTTGTTCTTCGAAGGACATGCCTGGTGTTTTCA
TGTGACACAATCCGGAAAGGGAAAAAAGCTGCCTATTTGTAGGTCGGTGC
AGCACAGGAAAGTGGCCAGGACACCCTACCGCACTGGCCTGCGATGTAGT
ATTTTGCACCAGCGTGCGACTACCAGCAAGAAGGCACTCTTGTCGACCTT
TGCGTGTTCAAGGCCTACTGCTGTAGTTCTCAGTGGTGATGCGATACCAC
TTGAGAAGCGGCGTTGTGGACGCTATCGTATCCATCTGTTTTGGCGACGT
GCACGCTCGGCCCCTTGCCGACGATGGACTAGACCAGACCAGACTAGACC
AGACCGCGAAACCCACTGCAACTACAAGCCAATCACAGGCAGCTGTCTAA
TGTTGTTCGGGGCGAACACCACAGACACAGATTCGCGTCTCACCCGCTTG
AAACACCCACACCCTGCTTGCGTCGCCCCACGTTTGCCGTTCGTGTGTGT
GTGTGTGTGTCTGTGCTGCGGGCGTCCAGGTGCTGTTCGCGCTCTGTGCA
CCGCTGTCCCCGAACGGCCGCCCCCCTGTGGTGGTGACGGTGGCGTGGCT
GTACGCGTCCTTGGAGAAGGGTTTCTTCGTCGATTCGGAGGCGTTCCGAC
CCAGCAGGTACGCAGCGCCAGTGGTCCGACGAGGCGCGAAACTCGCGCGG
CCGAGGATCGTGTGTTTTGGGACGTGTTGGGGGTGTGTCCTGGGACTCCG
TCGTGGGACACACGGGTTTCATAGGAAGGATATACATAACACCTTGGGAA
CATCTCCTGAGGTACGTTGTGCGAGACATGTCTCGAGGTTTCTGTTGAGC
TCCAAACAACGAGGGTTCATCGCGGACGGTACGTTTTTCGCGAAGCTCTC
GCGCTGCTCCCCTGCCATCCGCGGTGTGTGCCAGCGTCTGCCTGGTGTGG
CGTTGCGCCCGTAATGCCTGGCTTGAGACCGGCTATCGACGTCCCAGAAC
AGCAACGAGGCGTCTTGTTCATTTTCTGAACACCTTTCTCCCTTCTTCCT
TGTCCGCTTAGTTCTCTCTCCCTCTCCCTCTTTCCGCCCTCCCCCCCCCC
TCTCCCTTCCAGATACCGCGGACCGCCTGTCGAAGAGACCGCCGCCGAAC
AAACGCGGGCGGCGAGGGAGACACGCTCCATCTCGTCTCACTTGCTCGCG
GGGGAGAGGGTCATGCTGGGCGGAGTCACGGACCCCCCTCCGCAGGTGGC
GGAAAACCTTGTGAGGGCTACGGGAGCTCAGGTGGGTGTCTGGGCTCGTG
TCTTGGCGTGCATCCGTTGTTTTGGGAGCTTTCTCGAGCCTGTGTCTCCT
CACACAGTACCCAGCGTTTGTTTCGCCATGGTGATCACCTACCATTATCT
GTGCTCATCATCCTCAGTCCTGACGAGAGATTATTTTTTCTTTCAATATG
CGTGATCACCCCCAGCCAATCCGGACATATGGTCTACGCGAAGGCCGTCG
CTCTTCCGTGTACCCGTTCTTCGTCGTGCTTGGAGTTCTAGTGTCACCGG
TGCCGGTGCTGCTGGCAAGTTCGTTCGTTTCGTCAGGGACTCATCGCGCG
GCGGCATCGCGTTTTCGCGCAGCCGCTTTTGTCGGCCGGTCTCCTCGTCG
CCGACGTTCCAAGAGCTCGTGACCATTCTGCCATTCTGCCATTCTGTCTT
GTGTTTTCGACCGCTGATGGCGTCCTAGGCTTGGCCACTACAGCATGCCG
TCACCTGCTCTGTTGTTCTCTGCCACTATTGCTGACCGTCTCACGTGGGT
GTTGATGTTCCTCTTCCAGATCGCTTATTCAGTGGAAGACGCAACGTTGC
TTTTCGTGGAGTCAGAGACTCAACTAGAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11971:789..3917-

>mRNA_H-canaliculatus_F_contig11971.1725.1 ID=mRNA_H-canaliculatus_F_contig11971.1725.1|Name=mRNA_H-canaliculatus_F_contig11971.1725.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1380bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11971:789..3917- (Hapterophycus canaliculatus Oshoro5f female)
GGGGGGGGGGGCGGGGCGGAGGGGGGGGGCGGGGGGCACGGAGGGGGGGG
GAGGAGGAGGGGGTGGGGGGGGGGAGGGGGGGCGGGGAAGGAGGAAGACG
GCGCGGAGGGGAAGGAGACGGAGAAGCTGCAGGGGGTGGTGCGGGTGGTG
TTCTCTGGCTTGCAGCCGGGGGACCGGCAGGGGGGGGGGGGCGGGGCGGA
GGGGGGGGGCGGGGGGCACGGAGGGGGGGGGAGGAGGAGGGGGTGGGGGG
GGGGAGGGGGGGCGGGGAAGGAGGAAGACGGCGCGGAGGGGAAGGAGACG
GAGAAGCTGCAGGGGGTGGTGCGGGTGGTGTTCTCTGGCTTGCAGCCGGG
GGACCGGCAGGCGGCGGCGAGCGTGGTGCGATCTCTCTCCAAGAGGCATC
GCCCCTCCGGCTCCGGAGTCTGTTCGACTGACTCCGAGCCTTTCACTCAT
CTCGTTATCCCCGATGTGTCCCGCAGGACTCTCAAGGCGGCGGCGAGCGT
GGTGCGATCTCTCTCCAAGAGGCATCGCCCCTCCGGCTCCGGAGTCTGTT
CGACTGACTCCGAGCCTTTCACTCATCTCGTTATCCCCGATGTGTCCCGC
AGGACTCTCAAGGTGCTGTTCGCGCTCTGTGCACCGCTGTCCCCGAACGG
CCGCCCCCCTGTGGTGGTGACGGTGGCGTGGCTGTACGCGTCCTTGGAGA
AGGGTTTCTTCGTCGATTCGGAGGCGTTCCGACCCAGCAGGTACGCAGCG
CCAGTGGTCCGACGAGGCGCGAAACTCGCGCGGCCGAGGATCGTGCTGTT
CGCGCTCTGTGCACCGCTGTCCCCGAACGGCCGCCCCCCTGTGGTGGTGA
CGGTGGCGTGGCTGTACGCGTCCTTGGAGAAGGGTTTCTTCGTCGATTCG
GAGGCGTTCCGACCCAGCAGGTACGCAGCGCCAGTGGTCCGACGAGGCGC
GAAACTCGCGCGGCCGAGGATCACCGCCGCCGAACAAACGCGGGCGGCGA
GGGAGACACGCTCCATCTCGTCTCACTTGCTCGCGGGGGAGAGGGTCATG
CTGGGCGGAGTCACGGACCCCCCTCCGCAGGTGGCGGAAAACCTTGTGAG
GGCTACGGGAGCTCAGACCGCCGCCGAACAAACGCGGGCGGCGAGGGAGA
CACGCTCCATCTCGTCTCACTTGCTCGCGGGGGAGAGGGTCATGCTGGGC
GGAGTCACGGACCCCCCTCCGCAGGTGGCGGAAAACCTTGTGAGGGCTAC
GGGAGCTCAGATCGCTTATTCAGTGGAAGACGCAACGTTGCTTTTCGTGG
AGTCAGAGACTCAACTAGAGATCGCTTATTCAGTGGAAGACGCAACGTTG
CTTTTCGTGGAGTCAGAGACTCAACTAGAG
back to top