mRNA_H-canaliculatus_F_contig1197.1723.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1197.1723.1
Unique NamemRNA_H-canaliculatus_F_contig1197.1723.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1197.1723.1 vs. uniprot
Match: A0A6H5KBX5_9PHAE (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBX5_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 8.640e-18
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    4 QGMRIDYFLVSKSLAPRIKEVKVFGRGADREGFLGSDHSPLMLTLSP 144
            +GMRIDYFL+S  LAPRIKEVKVFG GADR+GFLGSDH PLMLTL P
Sbjct:  346 KGMRIDYFLLSTVLAPRIKEVKVFGSGADRDGFLGSDHCPLMLTLLP 392
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BLAST of mRNA_H-canaliculatus_F_contig1197.1723.1 vs. uniprot
Match: A0A516AG33_LINPO (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Lingulodinium polyedra TaxID=160621 RepID=A0A516AG33_LINPO)

HSP 1 Score: 65.9 bits (159), Expect = 2.670e-11
Identity = 27/44 (61.36%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    7 GMRIDYFLVSKSLAPRIKEVKVFGRGADREGFLGSDHSPLMLTL 138
            G R+DYFL+S++LAPR+   ++ GRGA REGFLGSDH P++L L
Sbjct:  320 GQRLDYFLLSEALAPRLARCEILGRGAGREGFLGSDHCPVLLEL 363
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BLAST of mRNA_H-canaliculatus_F_contig1197.1723.1 vs. uniprot
Match: A0A7S1K4S8_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1K4S8_9ALVE)

HSP 1 Score: 59.7 bits (143), Expect = 2.580e-10
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 NQGMRIDYFLVSKSLAPRIKEVKVFGRGADR---EGFLGSDHSPLMLTLSPS 147
            N+GMRID+ LVS+SL  R++ V++ G+G  R   EGF+GSDH PL++ L P+
Sbjct:   14 NKGMRIDHILVSESLMGRVESVRITGKGTARGGMEGFMGSDHCPLVVQLRPT 65
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BLAST of mRNA_H-canaliculatus_F_contig1197.1723.1 vs. uniprot
Match: D8TDW8_SELML (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8TDW8_SELML)

HSP 1 Score: 62.8 bits (151), Expect = 3.230e-10
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   10 MRIDYFLVSKSLAPRIKEVKVFGRGADREGFLGSDHSPLMLTL 138
            MRIDYFL+SK+L PR+   K+ GRG + EGFLGSDH PL + L
Sbjct:  300 MRIDYFLISKALLPRLASSKIHGRGIELEGFLGSDHCPLTMEL 342
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BLAST of mRNA_H-canaliculatus_F_contig1197.1723.1 vs. uniprot
Match: A0A812QKL5_SYMPI (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812QKL5_SYMPI)

HSP 1 Score: 62.0 bits (149), Expect = 5.690e-10
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    4 QGMRIDYFLVSKSLAPRIKEVKVFGRGADREGFLGSDHSPLMLTLSPSP 150
            +GMRIDY LV++ +  R++   + G+GADR GFLGSDH PL LTL   P
Sbjct:  251 KGMRIDYALVAEEILSRLEACDILGQGADRNGFLGSDHCPLRLTLLGGP 299
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BLAST of mRNA_H-canaliculatus_F_contig1197.1723.1 vs. uniprot
Match: A0A0G4GSG3_VITBC (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GSG3_VITBC)

HSP 1 Score: 59.7 bits (143), Expect = 4.200e-9
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 NQGMRIDYFLVSKSLAPRIKEVKVFGRGADR---EGFLGSDHSPLMLTLSPS 147
            N+GMRID+ LVS+SL  R++ V++ G+G  R   EGF+GSDH PL++ L P+
Sbjct:  315 NKGMRIDHILVSESLMGRVESVRITGKGTARGGMEGFMGSDHCPLVVQLRPT 366
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BLAST of mRNA_H-canaliculatus_F_contig1197.1723.1 vs. uniprot
Match: A0A2V3IW92_9FLOR (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IW92_9FLOR)

HSP 1 Score: 59.3 bits (142), Expect = 5.700e-9
Identity = 24/45 (53.33%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    4 QGMRIDYFLVSKSLAPRIKEVKVFGRGADREGFLGSDHSPLMLTL 138
            +GMRID+ +VS++L P+I+ V + G G +R GF+GSDHSPL+++L
Sbjct:  322 RGMRIDHCIVSRNLLPKIESVNITGYGVERCGFMGSDHSPLVISL 366
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BLAST of mRNA_H-canaliculatus_F_contig1197.1723.1 vs. uniprot
Match: UPI0010A2EE4F (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A2EE4F)

HSP 1 Score: 58.9 bits (141), Expect = 7.680e-9
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   10 MRIDYFLVSKSLAPRIKEVKVFGRGADREGFLGSDHSPLMLTLSPSP 150
            MRIDYF+VS+ L  RI   ++ G+G + +GF+GSDH P+ L LSPSP
Sbjct:  305 MRIDYFIVSEKLKDRIVACEMRGQGIELDGFVGSDHCPVTLELSPSP 351
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BLAST of mRNA_H-canaliculatus_F_contig1197.1723.1 vs. uniprot
Match: A0A812IK21_9DINO (APE1L protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812IK21_9DINO)

HSP 1 Score: 58.9 bits (141), Expect = 7.870e-9
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    4 QGMRIDYFLVSKSLAPRIKEVKVFGRGADREGFLGSDHSPLMLTL 138
            +GMRIDY LV++ +  R++   + G+GADR GFLGSDH PL  TL
Sbjct:  329 KGMRIDYALVAEEMLTRLEACDILGQGADRNGFLGSDHCPLRCTL 373
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1197.1723.1 vs. uniprot
Match: A0A812K9S6_9DINO (DNA-(apurinic or apyrimidinic site) endonuclease n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812K9S6_9DINO)

HSP 1 Score: 58.9 bits (141), Expect = 7.890e-9
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    4 QGMRIDYFLVSKSLAPRIKEVKVFGRGADREGFLGSDHSPLMLTL 138
            +GMRIDY LV++ +  R++   + G+GADR GFLGSDH PL  TL
Sbjct:  331 KGMRIDYALVAEEMLTRLEACDILGQGADRNGFLGSDHCPLRCTL 375
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1197.1723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBX5_9PHAE8.640e-1882.98DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A516AG33_LINPO2.670e-1161.36DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A7S1K4S8_9ALVE2.580e-1051.92Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
D8TDW8_SELML3.230e-1062.79DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A812QKL5_SYMPI5.690e-1055.10DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A0G4GSG3_VITBC4.200e-951.92DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A2V3IW92_9FLOR5.700e-953.33DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
UPI0010A2EE4F7.680e-955.32DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]
A0A812IK21_9DINO7.870e-955.56APE1L protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta... [more]
A0A812K9S6_9DINO7.890e-955.56DNA-(apurinic or apyrimidinic site) endonuclease n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1197contigH-canaliculatus_F_contig1197:28938..29090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue8.2e-14
Seed eggNOG ortholog2880.D7FVZ7
GOsGO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009507,GO:0009536,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016889,GO:0016894,GO:0016895,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360
EggNOG free text desc.double-stranded DNA 3'-5' exodeoxyribonuclease activity
EggNOG OGsCOG0708@1,KOG1294@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size144
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928900.901283-CDS-H-canaliculatus_F_contig1197:28937..290811622928900.901283-CDS-H-canaliculatus_F_contig1197:28937..29081Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1197 28938..29081 -
1696845606.7210007-CDS-H-canaliculatus_F_contig1197:28937..290811696845606.7210007-CDS-H-canaliculatus_F_contig1197:28937..29081Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1197 28938..29081 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928900.9127164-UTR-H-canaliculatus_F_contig1197:29081..290901622928900.9127164-UTR-H-canaliculatus_F_contig1197:29081..29090Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1197 29082..29090 -
1696845606.735297-UTR-H-canaliculatus_F_contig1197:29081..290901696845606.735297-UTR-H-canaliculatus_F_contig1197:29081..29090Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1197 29082..29090 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1197.1723.1prot_H-canaliculatus_F_contig1197.1723.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1197 28938..29081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1197.1723.1

>prot_H-canaliculatus_F_contig1197.1723.1 ID=prot_H-canaliculatus_F_contig1197.1723.1|Name=mRNA_H-canaliculatus_F_contig1197.1723.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=48bp
MRIDYFLVSKSLAPRIKEVKVFGRGADREGFLGSDHSPLMLTLSPSP*
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mRNA from alignment at H-canaliculatus_F_contig1197:28938..29090-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1197.1723.1 ID=mRNA_H-canaliculatus_F_contig1197.1723.1|Name=mRNA_H-canaliculatus_F_contig1197.1723.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=153bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1197:28938..29090- (Hapterophycus canaliculatus Oshoro5f female)
AACCAGGGCATGCGGATCGACTATTTTCTGGTGTCGAAGTCACTCGCCCC
CCGCATCAAGGAGGTGAAGGTTTTCGGCAGGGGTGCCGACCGCGAGGGGT
TCCTGGGATCAGACCACTCCCCCCTCATGCTCACGCTATCCCCTTCGCCG
TAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1197:28938..29090-

>mRNA_H-canaliculatus_F_contig1197.1723.1 ID=mRNA_H-canaliculatus_F_contig1197.1723.1|Name=mRNA_H-canaliculatus_F_contig1197.1723.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=288bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1197:28938..29090- (Hapterophycus canaliculatus Oshoro5f female)
ATGCGGATCGACTATTTTCTGGTGTCGAAGTCACTCGCCCCCCGCATCAA
GGAGGTGAAGGTTTTCGGCAGGGGTGCCGACCGCGAGGGGTTCCTGGGAT
CAGACCACTCCCCCCTCATGCTCACGCTATCCCCTTCGCCGTAGATGCGG
ATCGACTATTTTCTGGTGTCGAAGTCACTCGCCCCCCGCATCAAGGAGGT
GAAGGTTTTCGGCAGGGGTGCCGACCGCGAGGGGTTCCTGGGATCAGACC
ACTCCCCCCTCATGCTCACGCTATCCCCTTCGCCGTAG
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