mRNA_H-canaliculatus_F_contig11962.1716.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11962.1716.1
Unique NamemRNA_H-canaliculatus_F_contig11962.1716.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11962.1716.1 vs. uniprot
Match: A0A7S4JAY9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JAY9_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.250e-25
Identity = 49/66 (74.24%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 VFFPGKLASKLSDQETRDGWWAELREEIRSHAMLLCCTHVIGYSETTTIHDDVVIMSATGTAAAVR 198
            V + GKLASKLSDQETRDGWW+ELR+EIRSHA  LCC+HV GY E +TIHDDV+++S TGTAA VR
Sbjct:  281 VKYLGKLASKLSDQETRDGWWSELRDEIRSHARTLCCSHVTGYVEASTIHDDVIVLSVTGTAATVR 346
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BLAST of mRNA_H-canaliculatus_F_contig11962.1716.1 vs. uniprot
Match: B8BXV2_THAPS (C2 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXV2_THAPS)

HSP 1 Score: 108 bits (269), Expect = 2.450e-25
Identity = 50/66 (75.76%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 VFFPGKLASKLSDQETRDGWWAELREEIRSHAMLLCCTHVIGYSETTTIHDDVVIMSATGTAAAVR 198
            V + GKLASKLSDQETRDGWW ELR+EIRSHA  LCC HVIGY+E++TIHDDV ++S TGTAA VR
Sbjct:  459 VKYLGKLASKLSDQETRDGWWTELRDEIRSHARTLCCWHVIGYNESSTIHDDVCVLSITGTAATVR 524
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BLAST of mRNA_H-canaliculatus_F_contig11962.1716.1 vs. uniprot
Match: A0A7S4N180_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N180_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.480e-25
Identity = 49/66 (74.24%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 VFFPGKLASKLSDQETRDGWWAELREEIRSHAMLLCCTHVIGYSETTTIHDDVVIMSATGTAAAVR 198
            V + GKLASKLSDQETRDGWW+ELR+EIRSHA  LCC+HV GY E +TIHDDV+++S TGTAA VR
Sbjct:  150 VKYLGKLASKLSDQETRDGWWSELRDEIRSHARTLCCSHVTGYVEASTIHDDVIVLSVTGTAATVR 215
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BLAST of mRNA_H-canaliculatus_F_contig11962.1716.1 vs. uniprot
Match: K0T113_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T113_THAOC)

HSP 1 Score: 106 bits (264), Expect = 1.170e-24
Identity = 47/66 (71.21%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 VFFPGKLASKLSDQETRDGWWAELREEIRSHAMLLCCTHVIGYSETTTIHDDVVIMSATGTAAAVR 198
            V + G LASKLSDQETRDGWW ELR+EI+SHA +LCC+HV+GY E++TIHDDV ++S TGTAA VR
Sbjct:  147 VKYLGNLASKLSDQETRDGWWTELRDEIKSHAKILCCSHVVGYVESSTIHDDVCVLSVTGTAATVR 212
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BLAST of mRNA_H-canaliculatus_F_contig11962.1716.1 vs. uniprot
Match: B7G5C6_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G5C6_PHATC)

HSP 1 Score: 105 bits (262), Expect = 2.190e-24
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 VFFPGKLASKLSDQETRDGWWAELREEIRSHAMLLCCTHVIGYSETTTIHDDVVIMSATGTAAAVR 198
            V + G LASKLSDQETRD WW ELR+EIRSHA +LCC+HVIGY E +TIHDDV I+S TGTAA VR
Sbjct:  405 VKYLGNLASKLSDQETRDSWWTELRDEIRSHAKILCCSHVIGYLEASTIHDDVAILSITGTAATVR 470
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BLAST of mRNA_H-canaliculatus_F_contig11962.1716.1 vs. uniprot
Match: A0A1Z5KM14_FISSO (C2 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KM14_FISSO)

HSP 1 Score: 105 bits (261), Expect = 2.990e-24
Identity = 47/66 (71.21%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 VFFPGKLASKLSDQETRDGWWAELREEIRSHAMLLCCTHVIGYSETTTIHDDVVIMSATGTAAAVR 198
            V + G LASKLSDQETRD WW ELR+EIR+HA +LCCTH++GY E +TIHDDV I+S TGTAA VR
Sbjct:  418 VKYLGNLASKLSDQETRDSWWTELRDEIRAHAKILCCTHIVGYLEASTIHDDVAILSITGTAATVR 483
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BLAST of mRNA_H-canaliculatus_F_contig11962.1716.1 vs. uniprot
Match: A0A7S2E6P7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E6P7_9STRA)

HSP 1 Score: 101 bits (251), Expect = 5.100e-24
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 VFFPGKLASKLSDQETRDGWWAELREEIRSHAMLLCCTHVIGYSETTTIHDDVVIMSATGTAAAVR 198
            V +   +AS+LSDQETRDGWW+ELR+EIRSHA  LCC HVIGY+E TTI+DDV ++S TGTAA VR
Sbjct:   56 VKYLANIASRLSDQETRDGWWSELRDEIRSHARTLCCWHVIGYTEATTIYDDVCVLSITGTAATVR 121
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BLAST of mRNA_H-canaliculatus_F_contig11962.1716.1 vs. uniprot
Match: A0A836CKY6_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKY6_9STRA)

HSP 1 Score: 103 bits (258), Expect = 7.670e-24
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:   13 GKLASKLSDQETRDGWWAELREEIRSHAMLLCCTHVIGYSETTTIHDDVVIMSATGTA 186
            GKLASKLSDQETRDGWWAELREE+RSHA +L C+HV+GY E TTIHDDV I++ATGTA
Sbjct:  420 GKLASKLSDQETRDGWWAELREELRSHAKMLSCSHVVGYREATTIHDDVCILAATGTA 477
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BLAST of mRNA_H-canaliculatus_F_contig11962.1716.1 vs. uniprot
Match: A0A1W0A829_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A829_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.560e-23
Identity = 51/93 (54.84%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    1 VFFPGKLASKLSDQETRDGWWAELREEIRSHAMLLCCTHVIGYSETTTIHDDVVIMSATGTAAAVRDPHPRRPRRRR------TSLAGQFIPT 261
            V + G++A+KL DQETRD WW ELREE+RSHA  L C+HV+GY E+ TIHDDV ++SATGTAA V+ P    P RRR      T+++G+ +P+
Sbjct:  243 VKYLGRMATKLVDQETRDSWWMELREEVRSHAQSLQCSHVVGYIESCTIHDDVCVLSATGTAAVVKSP----PTRRRASKPLSTAVSGESLPS 331
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BLAST of mRNA_H-canaliculatus_F_contig11962.1716.1 vs. uniprot
Match: A0A7S4VGH9_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VGH9_9STRA)

HSP 1 Score: 101 bits (251), Expect = 6.680e-23
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 VFFPGKLASKLSDQETRDGWWAELREEIRSHAMLLCCTHVIGYSETTTIHDDVVIMSATGTAAAVR 198
            V +   +AS+LSDQETRDGWW+ELR+EIRSHA  LCC HVIGY+E TTI+DDV ++S TGTAA VR
Sbjct:   87 VKYLANIASRLSDQETRDGWWSELRDEIRSHARTLCCWHVIGYTEATTIYDDVCVLSITGTAATVR 152
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11962.1716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4JAY9_9STRA2.250e-2574.24Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
B8BXV2_THAPS2.450e-2575.76C2 domain-containing protein (Fragment) n=1 Tax=Th... [more]
A0A7S4N180_9STRA2.480e-2574.24Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
K0T113_THAOC1.170e-2471.21Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B7G5C6_PHATC2.190e-2474.24Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5KM14_FISSO2.990e-2471.21C2 domain-containing protein n=2 Tax=Fistulifera s... [more]
A0A7S2E6P7_9STRA5.100e-2469.70Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A836CKY6_9STRA7.670e-2481.03C2 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A1W0A829_9STRA3.560e-2354.84Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
A0A7S4VGH9_9STRA6.680e-2369.70Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11962contigH-canaliculatus_F_contig11962:2286..2929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue4.3e-22
Seed eggNOG ortholog35128.Thaps268475
Preferred nameC2CD5
KEGG koko:K20051
GOsGO:0000149,GO:0001505,GO:0001726,GO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005543,GO:0005544,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006906,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007267,GO:0007268,GO:0007269,GO:0008104,GO:0008150,GO:0008286,GO:0008289,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010638,GO:0010827,GO:0010828,GO:0012506,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016079,GO:0016192,GO:0017156,GO:0017157,GO:0017158,GO:0019905,GO:0023052,GO:0023061,GO:0030276,GO:0030659,GO:0031090,GO:0031252,GO:0031253,GO:0031256,GO:0031338,GO:0031340,GO:0031410,GO:0031982,GO:0032386,GO:0032388,GO:0032587,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0033043,GO:0033157,GO:0034613,GO:0034762,GO:0034764,GO:0038028,GO:0042221,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043434,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045055,GO:0045184,GO:0046324,GO:0046326,GO:0046872,GO:0046903,GO:0046907,GO:0048284,GO:0048489,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048791,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0055085,GO:0060341,GO:0060627,GO:0061024,GO:0061025,GO:0065002,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090087,GO:0090174,GO:0090313,GO:0090314,GO:0090316,GO:0097479,GO:0097480,GO:0097708,GO:0098590,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099568,GO:0099643,GO:0120025,GO:0120038,GO:1900076,GO:1900078,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903305,GO:1903530,GO:1903533,GO:1903827,GO:1903829,GO:1904951,GO:1905475,GO:1905477,GO:1990778,GO:2001273,GO:2001275
EggNOG free text desc.insulin receptor signaling pathway via phosphatidylinositol 3-kinase
EggNOG OGs2XB0J@2836,KOG1031@1,KOG1031@2759
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size289
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928899.9599617-CDS-H-canaliculatus_F_contig11962:2285..24101622928899.9599617-CDS-H-canaliculatus_F_contig11962:2285..2410Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11962 2286..2410 +
1696845606.2928708-CDS-H-canaliculatus_F_contig11962:2285..24101696845606.2928708-CDS-H-canaliculatus_F_contig11962:2285..2410Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11962 2286..2410 +
1622928899.9709492-CDS-H-canaliculatus_F_contig11962:2765..29281622928899.9709492-CDS-H-canaliculatus_F_contig11962:2765..2928Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11962 2766..2928 +
1696845606.3045018-CDS-H-canaliculatus_F_contig11962:2765..29281696845606.3045018-CDS-H-canaliculatus_F_contig11962:2765..2928Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11962 2766..2928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11962.1716.1prot_H-canaliculatus_F_contig11962.1716.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11962 2286..2928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11962.1716.1

>prot_H-canaliculatus_F_contig11962.1716.1 ID=prot_H-canaliculatus_F_contig11962.1716.1|Name=mRNA_H-canaliculatus_F_contig11962.1716.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=96bp
VFFPGKLASKLSDQETRDGWWAELREEIRSHAMLLCCTHVIGYSETTTIH
DDVVIMSATGTAAAVRDPHPRRPRRRRTSLAGQFIPTGSHHRQHNS
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mRNA from alignment at H-canaliculatus_F_contig11962:2286..2929+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11962.1716.1 ID=mRNA_H-canaliculatus_F_contig11962.1716.1|Name=mRNA_H-canaliculatus_F_contig11962.1716.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=644bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11962:2286..2929+ (Hapterophycus canaliculatus Oshoro5f female)
GTTTTCTTCCCAGGCAAGTTGGCGTCGAAGCTTTCGGACCAGGAAACGCG
CGACGGATGGTGGGCTGAGCTCCGGGAAGAGATCCGCTCGCACGCCATGC
TGCTGTGCTGTACCCACGTTATCGGGTAAGGCTCCGTAGCTCGCGTTGTT
GGTTGTGACGTGCCGAGTGATGGTGTCGGAGATGAGAAGTACATCCTCGA
TGTCGTTGGCGAGGCGGTCTTTGCCGCCGCGCGTGCGTTGCCTTCTGCCC
GGTCGAGCGAGCCACATGTATCGCCTCGTGTTGCTCAAGATTTTACACCC
CGAAGCTGCTTTCACGTCCCTCCACCCGCCCGTCACCTCCCTAACGTACA
TGCGCCATCACGTCAATCGATAGTCTCGGTTCAACCTGCCGAGATTATGG
TCAGCTTAGCAAGATACCCCGCCCCCCCTCCCACCCCCTGCCATTTTCTC
CTTGCTGTCCCCCTTCGCTCGTCCGCAAAGCTACTCCGAGACAACAACCA
TCCACGACGACGTGGTGATCATGTCAGCCACGGGGACGGCGGCGGCGGTG
CGCGACCCCCACCCCCGCCGACCTCGCCGCCGGCGCACCTCCCTGGCTGG
TCAGTTCATCCCCACCGGCTCCCATCACCGTCAGCACAACTCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11962:2286..2929+

>mRNA_H-canaliculatus_F_contig11962.1716.1 ID=mRNA_H-canaliculatus_F_contig11962.1716.1|Name=mRNA_H-canaliculatus_F_contig11962.1716.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=576bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11962:2286..2929+ (Hapterophycus canaliculatus Oshoro5f female)
GTTTTCTTCCCAGGCAAGTTGGCGTCGAAGCTTTCGGACCAGGAAACGCG
CGACGGATGGTGGGCTGAGCTCCGGGAAGAGATCCGCTCGCACGCCATGC
TGCTGTGCTGTACCCACGTTATCGGGTTTTCTTCCCAGGCAAGTTGGCGT
CGAAGCTTTCGGACCAGGAAACGCGCGACGGATGGTGGGCTGAGCTCCGG
GAAGAGATCCGCTCGCACGCCATGCTGCTGTGCTGTACCCACGTTATCGG
CTACTCCGAGACAACAACCATCCACGACGACGTGGTGATCATGTCAGCCA
CGGGGACGGCGGCGGCGGTGCGCGACCCCCACCCCCGCCGACCTCGCCGC
CGGCGCACCTCCCTGGCTGGTCAGTTCATCCCCACCGGCTCCCATCACCG
TCAGCACAACTCGCTACTCCGAGACAACAACCATCCACGACGACGTGGTG
ATCATGTCAGCCACGGGGACGGCGGCGGCGGTGCGCGACCCCCACCCCCG
CCGACCTCGCCGCCGGCGCACCTCCCTGGCTGGTCAGTTCATCCCCACCG
GCTCCCATCACCGTCAGCACAACTCG
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