mRNA_H-canaliculatus_F_contig1195.1705.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1195.1705.1
Unique NamemRNA_H-canaliculatus_F_contig1195.1705.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1195.1705.1 vs. uniprot
Match: A0A6H5JSA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA3_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 4.040e-41
Identity = 76/118 (64.41%), Postives = 97/118 (82.20%), Query Frame = 2 
Query:  779 VVEKVNLDVDVPLATEGMERSFIEKLVNKVVPQMELSLQAFMPEAYVELIKVGLHESLSAAERKEAMSELLRGQLSDPLSKQLNERVDCSFIPEPIEGKVLKIVANKLVDEFVESAVQ 1132
            V++ VN+D D+PL +EG ER  IEK V++ VP ME SL A MP AY++L+KV L E+L+AAERKE MSELLRG+L+ PLSKQLNERVDCS+IPE +EGKVLK+VA K+V+E V +AV+
Sbjct:   10 VIDAVNVDFDIPLISEGRERGIIEKFVDQAVPAMEPSLSALMPPAYMDLVKVALDETLTAAERKERMSELLRGELAVPLSKQLNERVDCSYIPESMEGKVLKVVAEKMVNEIVAAAVK 127
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BLAST of mRNA_H-canaliculatus_F_contig1195.1705.1 vs. uniprot
Match: D7G7I3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I3_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 3.400e-40
Identity = 76/118 (64.41%), Postives = 98/118 (83.05%), Query Frame = 2 
Query:  779 VVEKVNLDVDVPLATEGMERSFIEKLVNKVVPQMELSLQAFMPEAYVELIKVGLHESLSAAERKEAMSELLRGQLSDPLSKQLNERVDCSFIPEPIEGKVLKIVANKLVDEFVESAVQ 1132
            V++ VN+D+D+PL +EG ER  IEK V++ VP ME SL A MP AYV+L+KV L E+L+AAERKE M+ELLRG+L+ PLS+QLNERVDCS+IPE +EGKVLKIVA K+V+E V +AV+
Sbjct:   47 VIDAVNVDIDIPLVSEGRERRAIEKFVDQAVPAMEPSLSALMPPAYVDLVKVVLDETLAAAERKERMAELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNEIVAAAVK 164
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BLAST of mRNA_H-canaliculatus_F_contig1195.1705.1 vs. uniprot
Match: A0A6H5JD72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD72_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 5.740e-39
Identity = 75/118 (63.56%), Postives = 96/118 (81.36%), Query Frame = 2 
Query:  779 VVEKVNLDVDVPLATEGMERSFIEKLVNKVVPQMELSLQAFMPEAYVELIKVGLHESLSAAERKEAMSELLRGQLSDPLSKQLNERVDCSFIPEPIEGKVLKIVANKLVDEFVESAVQ 1132
            V++ VN+D D+PL +EG+ER FIE  V++ VP ME SL A MP AYV+L+KV L E+L+AAERKE MS LLRG+L+ PLSKQLNERVD S+IPE +EGKVLK+VA K+V+E V +AV+
Sbjct:   65 VIDAVNVDFDIPLLSEGIERRFIENFVDQAVPAMEPSLSALMPPAYVDLVKVALDETLTAAERKECMSALLRGELAVPLSKQLNERVDVSYIPESMEGKVLKVVAEKMVNEIVAAAVK 182
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BLAST of mRNA_H-canaliculatus_F_contig1195.1705.1 vs. uniprot
Match: D7G7I4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7I4_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 3.810e-33
Identity = 66/117 (56.41%), Postives = 90/117 (76.92%), Query Frame = 2 
Query:  779 VVEKVNLDVDVPLATEGMERSFIEKLVNKVVPQMELSLQAFMPEAYVELIKVGLHESLSAAERKEAMSELLRGQLSDPLSKQLNERVDCSFIPEPIEGKVLKIVANKLVDEFVESAV 1129
            +V KVN D+D+PL +E  ER  IEK V+K++P++E S+QA MP+ YV  IK  L E+ +   R++ +S LLRG+LS+PL++QLNERVDCS IPE  EGKVLK+V+NK++DEFVE  V
Sbjct:   10 MVRKVNDDLDIPLLSESRERRLIEKFVDKIMPKVEPSMQAIMPDVYVRCIKKALDETETIKNRRKHISTLLRGELSEPLTRQLNERVDCSGIPEKWEGKVLKLVSNKVIDEFVEWTV 126
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BLAST of mRNA_H-canaliculatus_F_contig1195.1705.1 vs. uniprot
Match: A0A1X6P3R0_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3R0_PORUM)

HSP 1 Score: 89.7 bits (221), Expect = 2.140e-17
Identity = 45/113 (39.82%), Postives = 73/113 (64.60%), Query Frame = 2 
Query:  773 QAVVEKVNLDVDVPLATEGMERSFIEKLVNKVVPQMELSLQAFMPEAYVELIKVGLHESLSAAERKEAMSELLRGQLSDPLSKQLNERVDCSFIPEPIEGKVLKIVANKLVDE 1111
            + VV K N ++D+P  +E  E   IEK+V ++ P++E +L  FMP+  VE+I++ L E  S  ER+E + +L+  Q ++PL+  LNERVD +F+PE  E  VL+ V  +++ E
Sbjct:    8 EVVVRKANEEIDLPFVSERRESRAIEKVVERLNPELEPALLQFMPKINVEMIRLLLDERKSVKERRERLVDLVLEQAAEPLTAALNERVDVAFLPERAESVVLRKVVERMLKE 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1195.1705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JSA3_9PHAE4.040e-4164.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7I3_ECTSI3.400e-4064.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD72_9PHAE5.740e-3963.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7I4_ECTSI3.810e-3356.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1X6P3R0_PORUM2.140e-1739.82Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1195contigH-canaliculatus_F_contig1195:6247..9346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_000390.1
Exons4
Model size1811
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1195.1705.1prot_H-canaliculatus_F_contig1195.1705.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1195 6851..8654 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928898.9316978-UTR-H-canaliculatus_F_contig1195:6246..68501622928898.9316978-UTR-H-canaliculatus_F_contig1195:6246..6850Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1195 6247..6850 +
1696845605.8895004-UTR-H-canaliculatus_F_contig1195:6246..68501696845605.8895004-UTR-H-canaliculatus_F_contig1195:6246..6850Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1195 6247..6850 +
1622928898.9996924-UTR-H-canaliculatus_F_contig1195:8691..93461622928898.9996924-UTR-H-canaliculatus_F_contig1195:8691..9346Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1195 8692..9346 +
1696845605.9392092-UTR-H-canaliculatus_F_contig1195:8691..93461696845605.9392092-UTR-H-canaliculatus_F_contig1195:8691..9346Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1195 8692..9346 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928898.9512496-CDS-H-canaliculatus_F_contig1195:6850..71111622928898.9512496-CDS-H-canaliculatus_F_contig1195:6850..7111Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1195 6851..7111 +
1696845605.8999119-CDS-H-canaliculatus_F_contig1195:6850..71111696845605.8999119-CDS-H-canaliculatus_F_contig1195:6850..7111Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1195 6851..7111 +
1622928898.968667-CDS-H-canaliculatus_F_contig1195:7410..75111622928898.968667-CDS-H-canaliculatus_F_contig1195:7410..7511Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1195 7411..7511 +
1696845605.9100466-CDS-H-canaliculatus_F_contig1195:7410..75111696845605.9100466-CDS-H-canaliculatus_F_contig1195:7410..7511Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1195 7411..7511 +
1622928898.980964-CDS-H-canaliculatus_F_contig1195:8464..86541622928898.980964-CDS-H-canaliculatus_F_contig1195:8464..8654Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1195 8465..8654 +
1696845605.926252-CDS-H-canaliculatus_F_contig1195:8464..86541696845605.926252-CDS-H-canaliculatus_F_contig1195:8464..8654Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1195 8465..8654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1195.1705.1

>prot_H-canaliculatus_F_contig1195.1705.1 ID=prot_H-canaliculatus_F_contig1195.1705.1|Name=mRNA_H-canaliculatus_F_contig1195.1705.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=184bp
MWSEQTGMLRHVSGQDPAKEPGQKSQHFVIPPWLPYNLRHLLGIDFPAQR
RSFVACQAVVEKVNLDVDVPLATEGMERSFIEKLVNKVVPQMELSLQAFM
PEAYVELIKVGLHESLSAAERKEAMSELLRGQLSDPLSKQLNERVDCSFI
PEPIEGKVLKIVANKLVDEFVESAVQGGDGEPK*
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mRNA from alignment at H-canaliculatus_F_contig1195:6247..9346+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1195.1705.1 ID=mRNA_H-canaliculatus_F_contig1195.1705.1|Name=mRNA_H-canaliculatus_F_contig1195.1705.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3100bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1195:6247..9346+ (Hapterophycus canaliculatus Oshoro5f female)
AAAAAACGTACCAGGTAAATATTCCGGGGTAGGCCACCTAGCATGGGCGA
TGCGAAAAAATCATGTTCGCCGGCGAGTGCCACACGACCAACGCCTGTCA
CTTTTCGGGACCCTCGAAGCTGCCAGCCCGGGAGACTAACCTCTGCTTGC
TTCCGGCCGGCCAGTATTCCTTCACGACTTGACGACACCAATTTTCACTT
CGGCTTATTCCTCTCCTATGTGCCGGTGTACACCTTATCTTGCAACCCAC
GAGAACAGATAACTCAGTACGGTCGGCACGATGTTGAACGAGAGGCAGGC
CCAGGTAAGTGTTGGCCGCAGATCCGGACCGCAAGGCCGGGGTGCTGTGG
TACGTCGTCTAAGGAGTAAAGGGTTTCACTCTCTGCGAACACTGTGTTTG
ATTTGAAATTATGTCCGCGATGCGTAACTTCAACGACGCGCATGGGCTTT
TGAGCTCCGTGCACCGTCTCTAATGCCCCAATTTGTGCATGCGGTGCTTT
CGTCTTCAAAGATTGCGTTTAAGCTATGACTTAAAAACGGAGTTCGGGCG
TTTTGCCGAAGGCCTCCTGCGGCCGCGAGGTGGGATGTATGCAGGGGATT
GGCCATGTGGAGCGAACAGACCGGCATGCTCCGGCATGTTTCGGGGCAAG
ACCCCGCCAAGGAGCCTGGGCAAAAAAGCCAGCATTTTGTTATCCCGCCA
TGGCTTCCCTACAATCTGCGTCATTTGCTTGGTATTGATTTTCCCGCTCA
GCGTCGTTCATTCGTTGCTTGTCAGGCGGTGGTCGAGAAGGTGAACCTGG
ACGTGGATGTTCCTCTCGCTACGGAGGGGATGGAAAGGAGCTTCATCGAA
AAGCTTGTCAACAAGGTGCCGGGGTCTGTTGGACGCGTGAGATTGTGATG
GCCTAGGCCAATCTTTGTGTTCGTCCTCGATGCCGGAACAACCACTCGGA
GATGGCTGAACGGTCATGCAGACAAAGAGAAGCGGTAGTTTACAACAAAA
AGGGATGCGATGACATCTCCGCGGGTGGGCTCAAAGCTCTTTCCAGCTTT
CCAGCATATTCTCATGAGTGGCCATGAATGTTCGTTGTTGACTATCAGCC
ACGACTCATTTTTCAACTTTCACGCGCGCTGCTTCCTGCTGCATATAACA
CGATGCGTGTCCAGGTCGTTCCCCAGATGGAGCTGTCCCTCCAAGCGTTC
ATGCCGGAAGCGTACGTGGAGTTGATCAAGGTCGGGCTACACGAAAGCTT
GTCCGCAGCTGAAAGGTCAGTTAAGATGTACACCGGGTCAAAATGTAAGG
GCATCGAATCAGTCGAAATTGGCGGTCAAAGAGGAGGGGTGCCCTGCCAG
AAGGCATGAATAGAGATTCATCGATGCTAGCCTGGAGTACAGATACTGCG
TTCCCTCTGCCACGTGAATGACAGCGTGGGAGGATTTCGAAAGATAAAAA
TCCGAGGATCGAATGATATTCCCATTACGACCAGCACCAGTGCGACGTTT
GGATTTCAATCCTGATAGATACCAGTACATGACCGATATTTCTTCATTTC
ATGCTGGCGGATACTAGCGTAAGTCTTTCTCCTCTTGCATGCTGGCAGAT
AGGCGACACTAGGTATTCCTCTCTCTTGTACTGTTGGATAATAGCGTTAT
TTACCGGGTAAAACCGGACGTGCGCATACTGGCACTGTCCGGTGCACGGA
ATGCTGGTGACATTACCCTGGATGCCGATGGTACGTGTGGAATCCTAGTC
CTCCTCCTTCATGGAAGCTCGATATCCACCCTTGTCCACACACGTTCCGT
TCAAGTTCCTGCGATTTGTGAATGCAATCTTTATTTCGACAAGCCTACGT
GACTTGATAGTGACCACGCGTATTTTCCGAGCTTGGCGCGAAGCACCTAC
CAACTGCACCAAGAGGAGCGGCGTTGAGTGACCGCGGGCAGGATAGTAGA
ACAGAGTCTTGAGGACCATGCGCGATAGCCCACCCGAATATTATCACCTG
CAAATCGCGAACTTGGGGCATGCTCCTTTGCGCGGATTCGTCAAATGTGG
AACGCTCTAAATTCGATTGCCAGGCGAAAGGCTTCGTGTGAGTATATCGA
GCGAAGCCCCTTCAGCATCGTAGACAAAAGTCAAATACCTCCAAGTAGAT
AACTACCGGTACACACTCCAGCGCCCCTTTATCGTTCTGCCTTTCTTTTT
CCCGAACTTGCCTCCCAGGAAGGAGGCCATGTCCGAGCTCCTGCGAGGCC
AGCTCTCGGACCCGCTCTCGAAGCAGCTCAACGAGCGCGTGGACTGCTCG
TTCATCCCGGAGCCTATCGAGGGGAAGGTGCTCAAGATCGTAGCCAATAA
GCTCGTCGACGAGTTCGTCGAGTCGGCCGTTCAGGGTGGAGACGGGGAGC
CCAAGTAGGCGTCATCGACCAGGCGGGCGAAAGGACCGTCCGCAGTGTTG
ATGACCCTCCTGAGAGCGGTCGAAGGCGCATTCATTTTGCCGAACGGTGG
GATGGCACAGGTGTGGCACTGGGCCTTGCGTTTGTATCCAGGGCGCGGCC
TTTCGTTTTTCCGCCCCGGGATGGCGTTCAAGTAAACGTCTGAGCTTGAT
TGCTGCTCTGGTCTACGGGGATGGGTACGCATGTTTTCGAGGTAAGATCG
GGAAAGTAGGTGGAGTGACCGTCGTGCGTGGCGGCGCCCCTCGGCAAGCC
TCCCTCTCGATTCGGAAGGTCCAGCAGAGAGCATATGTGCGTGTTGGCGG
GCTCAGAGCTTCCAACTTTCATGGGTAGCCGTAATCCTTTGTCGTCGTCG
CAGATACTCTTGGTCCAGGTGGTCTAGATTCAAGATTTACATATCAATCT
CTTTATTAACACGACAAGGAAAGGGTAAAAAACATTTGCCGAGCAAGATG
CCTGGAACGTGAAGCTGATTGGAGAGGAACCAATGGAATCCGAGGGACTG
GCTCATCTTCCTGCAAAGGTTCAACAAAGCGGCCGAACCTGAAGCAATAA
AAAGCCGAGAGCGGACACGAAAGTGCTGACTGTTCACGCTTGGTCGCAGG
TAATCAGGACTGACCCCCAAATTCAGCAGCAGCAGCGCGAGGGAGAGAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1195:6247..9346+

>mRNA_H-canaliculatus_F_contig1195.1705.1 ID=mRNA_H-canaliculatus_F_contig1195.1705.1|Name=mRNA_H-canaliculatus_F_contig1195.1705.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1104bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1195:6247..9346+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGGAGCGAACAGACCGGCATGCTCCGGCATGTTTCGGGGCAAGACCC
CGCCAAGGAGCCTGGGCAAAAAAGCCAGCATTTTGTTATCCCGCCATGGC
TTCCCTACAATCTGCGTCATTTGCTTGGTATTGATTTTCCCGCTCAGCGT
CGTTCATTCGTTGCTTGTCAGGCGGTGGTCGAGAAGGTGAACCTGGACGT
GGATGTTCCTCTCGCTACGGAGGGGATGGAAAGGAGCTTCATCGAAAAGC
TTGTCAACAAGATGTGGAGCGAACAGACCGGCATGCTCCGGCATGTTTCG
GGGCAAGACCCCGCCAAGGAGCCTGGGCAAAAAAGCCAGCATTTTGTTAT
CCCGCCATGGCTTCCCTACAATCTGCGTCATTTGCTTGGTATTGATTTTC
CCGCTCAGCGTCGTTCATTCGTTGCTTGTCAGGCGGTGGTCGAGAAGGTG
AACCTGGACGTGGATGTTCCTCTCGCTACGGAGGGGATGGAAAGGAGCTT
CATCGAAAAGCTTGTCAACAAGGTCGTTCCCCAGATGGAGCTGTCCCTCC
AAGCGTTCATGCCGGAAGCGTACGTGGAGTTGATCAAGGTCGGGCTACAC
GAAAGCTTGTCCGCAGCTGAAAGGTCGTTCCCCAGATGGAGCTGTCCCTC
CAAGCGTTCATGCCGGAAGCGTACGTGGAGTTGATCAAGGTCGGGCTACA
CGAAAGCTTGTCCGCAGCTGAAAGGAAGGAGGCCATGTCCGAGCTCCTGC
GAGGCCAGCTCTCGGACCCGCTCTCGAAGCAGCTCAACGAGCGCGTGGAC
TGCTCGTTCATCCCGGAGCCTATCGAGGGGAAGGTGCTCAAGATCGTAGC
CAATAAGCTCGTCGACGAGTTCGTCGAGTCGGCCGTTCAGGGTGGAGACG
GGGAGCCCAAGTAGGAAGGAGGCCATGTCCGAGCTCCTGCGAGGCCAGCT
CTCGGACCCGCTCTCGAAGCAGCTCAACGAGCGCGTGGACTGCTCGTTCA
TCCCGGAGCCTATCGAGGGGAAGGTGCTCAAGATCGTAGCCAATAAGCTC
GTCGACGAGTTCGTCGAGTCGGCCGTTCAGGGTGGAGACGGGGAGCCCAA
GTAG
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