mRNA_H-canaliculatus_F_contig11949.1704.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11949.1704.1
Unique NamemRNA_H-canaliculatus_F_contig11949.1704.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11949.1704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11949contigH-canaliculatus_F_contig11949:610..947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size340
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928898.5668347-CDS-H-canaliculatus_F_contig11949:609..9451622928898.5668347-CDS-H-canaliculatus_F_contig11949:609..945Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11949 610..945 +
1696845605.7801178-CDS-H-canaliculatus_F_contig11949:609..9451696845605.7801178-CDS-H-canaliculatus_F_contig11949:609..945Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11949 610..945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11949.1704.1prot_H-canaliculatus_F_contig11949.1704.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11949 610..945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11949.1704.1

>prot_H-canaliculatus_F_contig11949.1704.1 ID=prot_H-canaliculatus_F_contig11949.1704.1|Name=mRNA_H-canaliculatus_F_contig11949.1704.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=112bp
RRGRGQAYLYGGPIHVVCLTEVQLDKVEGTGNIICGTFCCTYRYTPPRSA
ASTKRQLPQPTLRVVWTHRTYSSTLAVSPAAAAVFDPLCGSHRGSLLRHL
LPFSRLLHLGIS
back to top

mRNA from alignment at H-canaliculatus_F_contig11949:610..947+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11949.1704.1 ID=mRNA_H-canaliculatus_F_contig11949.1704.1|Name=mRNA_H-canaliculatus_F_contig11949.1704.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=338bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11949:610..947+ (Hapterophycus canaliculatus Oshoro5f female)
CGAAGGGGCAGAGGGCAAGCTTACTTGTATGGTGGACCGATTCACGTTGT
GTGCTTGACAGAAGTTCAATTGGACAAGGTCGAGGGAACGGGGAATATTA
TATGTGGCACTTTCTGCTGTACATACCGGTATACCCCGCCGAGGTCTGCC
GCTTCGACAAAACGTCAACTGCCGCAGCCCACCTTACGAGTAGTCTGGAC
CCACAGAACTTACAGCAGTACGCTCGCCGTGAGTCCAGCTGCGGCGGCGG
TATTTGACCCCCTCTGTGGCTCACATCGCGGCTCTCTCTTGCGGCACTTA
CTTCCATTTTCGCGCTTACTGCACCTTGGTATTTCAAC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11949:610..947+

>mRNA_H-canaliculatus_F_contig11949.1704.1 ID=mRNA_H-canaliculatus_F_contig11949.1704.1|Name=mRNA_H-canaliculatus_F_contig11949.1704.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=672bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11949:610..947+ (Hapterophycus canaliculatus Oshoro5f female)
CGAAGGGGCAGAGGGCAAGCTTACTTGTATGGTGGACCGATTCACGTTGT
GTGCTTGACAGAAGTTCAATTGGACAAGGTCGAGGGAACGGGGAATATTA
TATGTGGCACTTTCTGCTGTACATACCGGTATACCCCGCCGAGGTCTGCC
GCTTCGACAAAACGTCAACTGCCGCAGCCCACCTTACGAGTAGTCTGGAC
CCACAGAACTTACAGCAGTACGCTCGCCGTGAGTCCAGCTGCGGCGGCGG
TATTTGACCCCCTCTGTGGCTCACATCGCGGCTCTCTCTTGCGGCACTTA
CTTCCATTTTCGCGCTTACTGCACCTTGGTATTTCACGAAGGGGCAGAGG
GCAAGCTTACTTGTATGGTGGACCGATTCACGTTGTGTGCTTGACAGAAG
TTCAATTGGACAAGGTCGAGGGAACGGGGAATATTATATGTGGCACTTTC
TGCTGTACATACCGGTATACCCCGCCGAGGTCTGCCGCTTCGACAAAACG
TCAACTGCCGCAGCCCACCTTACGAGTAGTCTGGACCCACAGAACTTACA
GCAGTACGCTCGCCGTGAGTCCAGCTGCGGCGGCGGTATTTGACCCCCTC
TGTGGCTCACATCGCGGCTCTCTCTTGCGGCACTTACTTCCATTTTCGCG
CTTACTGCACCTTGGTATTTCA
back to top