mRNA_H-canaliculatus_F_contig11944.1702.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11944.1702.1
Unique NamemRNA_H-canaliculatus_F_contig11944.1702.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11944.1702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11944contigH-canaliculatus_F_contig11944:2956..3692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size679
Cds size576
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11944.1702.1prot_H-canaliculatus_F_contig11944.1702.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11944 2956..3590 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928898.4037864-CDS-H-canaliculatus_F_contig11944:2955..34681622928898.4037864-CDS-H-canaliculatus_F_contig11944:2955..3468Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11944 2956..3468 -
1696845605.7434814-CDS-H-canaliculatus_F_contig11944:2955..34681696845605.7434814-CDS-H-canaliculatus_F_contig11944:2955..3468Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11944 2956..3468 -
1622928898.415479-CDS-H-canaliculatus_F_contig11944:3527..35901622928898.415479-CDS-H-canaliculatus_F_contig11944:3527..3590Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11944 3528..3590 -
1696845605.7527575-CDS-H-canaliculatus_F_contig11944:3527..35901696845605.7527575-CDS-H-canaliculatus_F_contig11944:3527..3590Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11944 3528..3590 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928898.426586-UTR-H-canaliculatus_F_contig11944:3590..36921622928898.426586-UTR-H-canaliculatus_F_contig11944:3590..3692Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11944 3591..3692 -
1696845605.761459-UTR-H-canaliculatus_F_contig11944:3590..36921696845605.761459-UTR-H-canaliculatus_F_contig11944:3590..3692Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11944 3591..3692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11944.1702.1

>prot_H-canaliculatus_F_contig11944.1702.1 ID=prot_H-canaliculatus_F_contig11944.1702.1|Name=mRNA_H-canaliculatus_F_contig11944.1702.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=192bp
MTPLGRYRKAIALTAVPPAAVQQQRQQQQRHHQRVSGDGSGGGADVVARN
PRASSASPSSISGLTRRRFNPIHTASMVPGRHSGGGNESTASVGESVRGG
GGDGDVSIERQRPAARAWKSERFSRSGSPRLRPPASASAATAAGAAATAA
GDEMGEGDDENTSLAAAVSGGRRGIDLSPTSIWDHGTGGSAW
back to top

mRNA from alignment at H-canaliculatus_F_contig11944:2956..3692-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11944.1702.1 ID=mRNA_H-canaliculatus_F_contig11944.1702.1|Name=mRNA_H-canaliculatus_F_contig11944.1702.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=737bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11944:2956..3692- (Hapterophycus canaliculatus Oshoro5f female)
GCAGGGGTGGCGGGTTGATGTTGCTGGGGAGTGACCAAGGGGAGACGACG
GCGACCCCAACTACGGCGAGGGGGTCAACCCCGGCGGCCATGAGAGCACG
AGATGACTCCGCTCGGGAGATATCGAAAAGCGATCGCGTTGACGGCGGTC
CCGCCTGCGGCGGTAGTGATGATGGTGGTGGCGACCTCCGCCCGCCTCCG
CCACAGCCGCCGCCACCTCCGCAGCAGCAGCAGCGGCAGCAGCAGCAGCG
TCATCACCAAAGGGTGTCAGGGGATGGCAGCGGCGGAGGAGCTGATGTCG
TTGCCCGCAATCCGCGGGCATCGTCAGCATCCCCCTCGTCGATCTCTGGC
TTGACCCGACGCCGCTTCAACCCGATTCACACCGCCTCGATGGTTCCGGG
GAGGCATAGCGGCGGCGGCAACGAGAGTACCGCCAGTGTCGGCGAAAGCG
TTCGCGGTGGCGGTGGCGATGGCGATGTGAGCATAGAACGGCAACGGCCT
GCGGCAAGGGCCTGGAAGAGCGAGCGATTTTCGCGGTCGGGGTCGCCGCG
GCTGCGACCTCCGGCGTCGGCGTCGGCAGCAACAGCAGCAGGAGCGGCAG
CAACAGCAGCCGGGGATGAGATGGGCGAGGGAGACGATGAGAACACCTCC
CTCGCCGCCGCTGTTAGTGGCGGCCGTCGCGGCATTGATTTGTCGCCAAC
CTCGATCTGGGACCACGGCACAGGGGGTTCCGCATGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11944:2956..3692-

>mRNA_H-canaliculatus_F_contig11944.1702.1 ID=mRNA_H-canaliculatus_F_contig11944.1702.1|Name=mRNA_H-canaliculatus_F_contig11944.1702.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1152bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11944:2956..3692- (Hapterophycus canaliculatus Oshoro5f female)
ATGACTCCGCTCGGGAGATATCGAAAAGCGATCGCGTTGACGGCGGTCCC
GCCTGCGGCGGTAATGACTCCGCTCGGGAGATATCGAAAAGCGATCGCGT
TGACGGCGGTCCCGCCTGCGGCGGTACAGCAGCAGCGGCAGCAGCAGCAG
CGTCATCACCAAAGGGTGTCAGGGGATGGCAGCGGCGGAGGAGCTGATGT
CGTTGCCCGCAATCCGCGGGCATCGTCAGCATCCCCCTCGTCGATCTCTG
GCTTGACCCGACGCCGCTTCAACCCGATTCACACCGCCTCGATGGTTCCG
GGGAGGCATAGCGGCGGCGGCAACGAGAGTACCGCCAGTGTCGGCGAAAG
CGTTCGCGGTGGCGGTGGCGATGGCGATGTGAGCATAGAACGGCAACGGC
CTGCGGCAAGGGCCTGGAAGAGCGAGCGATTTTCGCGGTCGGGGTCGCCG
CGGCTGCGACCTCCGGCGTCGGCGTCGGCAGCAACAGCAGCAGGAGCGGC
AGCAACAGCAGCCGGGGATGAGATGGGCGAGGGAGACGATGAGAACACCT
CCCTCGCCGCCGCTGTTAGTGGCGGCCGTCGCGGCATTGATTTGTCGCCA
ACCTCGATCTGGGACCACGGCACAGGGGGTTCCGCATGGCAGCAGCAGCG
GCAGCAGCAGCAGCGTCATCACCAAAGGGTGTCAGGGGATGGCAGCGGCG
GAGGAGCTGATGTCGTTGCCCGCAATCCGCGGGCATCGTCAGCATCCCCC
TCGTCGATCTCTGGCTTGACCCGACGCCGCTTCAACCCGATTCACACCGC
CTCGATGGTTCCGGGGAGGCATAGCGGCGGCGGCAACGAGAGTACCGCCA
GTGTCGGCGAAAGCGTTCGCGGTGGCGGTGGCGATGGCGATGTGAGCATA
GAACGGCAACGGCCTGCGGCAAGGGCCTGGAAGAGCGAGCGATTTTCGCG
GTCGGGGTCGCCGCGGCTGCGACCTCCGGCGTCGGCGTCGGCAGCAACAG
CAGCAGGAGCGGCAGCAACAGCAGCCGGGGATGAGATGGGCGAGGGAGAC
GATGAGAACACCTCCCTCGCCGCCGCTGTTAGTGGCGGCCGTCGCGGCAT
TGATTTGTCGCCAACCTCGATCTGGGACCACGGCACAGGGGGTTCCGCAT
GG
back to top