mRNA_H-canaliculatus_F_contig1015.169.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1015.169.1 vs. uniprot
Match: D8LBT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT9_ECTSI) HSP 1 Score: 630 bits (1626), Expect = 5.160e-183 Identity = 523/1214 (43.08%), Postives = 658/1214 (54.20%), Query Frame = 1 Query: 544 ILSSRERSPSTQRYASAWLPPRVTRLERETHDLLTACRKAGRDTGYAARLNDEDCRHGCTPEGQSPGRSGECRRISGQSNSYGGSFRSDEKIEDLGRGAVIRLIGNLGMGRYAHRFRAFAVTGSDLASCTEEDLVQIGVSFRPHRIRLLKEIAIRKDQRHGSGIRGREKSTYNATETWATSE--INTTSTAPDQHDSFNTLVAPGQIDPSAPDQRGNPKAITATSTKDERSASKKPSDAGRTNEATDSTSTSTACTTYERAVPPTVEPTSFAQDCVPTARVEGDKSHGSSGGKYDRGGKETLLMSAKVAGSR--RIVGEDNSSRACGTGQNSSEGTGLTRRQVQMPGSGEFHGQRTVVPFAQAHDKSAK-QGLTTSELKGTLQMCGVRTADMKLALVGRDPFLQVKACDQLRRINVAAGAGAEASWDDAVVSFSVTDQTLPSDGVQIELCCGNIGAQDLFASGCIPGDVTLQLLCRLQSDGLESVRPSADESAGGNSAVSHASGSLAVLVRLFAEAGGEEAGVCTLNLKFKPDNGAVLASEAEDRRS---SEQTEARREPETAAVEEMEV------------EALATAP-EGVEHRRSSSTLLKGTAKHIEAIEEVCQHAYRQQEHSDQSDRGEAQQD---LASRTEIQSSAASI--------TSNREAKAVGGVPPSLEKVENVLAPHDAAVILQSHTRRRAAKRVAKRRVKERTAANRVQAFARQRMDVSKVRQARERELATMHQERCDAVVRLQGTARRRIAAKAVQXXXXXEAELAKRDAEAAQTLQGFARHQLRKRARRRQVAATKMQGISSIRAAKAEVRRRKAEKQLEAKRKSDEEAAALQIQTAVRRQRAAHEQHLVQSRQRNXXXXXXXXXARSRSAQSKACRQRGRQALLKTAARITVQDALKQALENCVARVMEMRRRAASDCLRQALGNQRDVATGATYSTAPVKKDAKTTVASACILHAFDKKQRPTNEAADESYTSLPEAGLSLKGSTKIESDAAVTLATADDAPTEKENSELARLMDEAESFRQLEMAAAAEEQRTAARRIQGLCRKRRARRKTDRRDTLSH-SPPVVSAGCTTRFTQELMDSRKSEEAATHIQRAFRTWCLVRQARGLSARKTTAVICIQQATRSRTAFHRVADLRAKQRDLVQIKLRTEADQAVIRGEAAECIQRGVRTRRALILIDRLRRKK------KMQETGQR 4068
+++SR RS S ASAWLPPRVTRLERETHDLLTACRKAGR G AAR G +G P RSGE +R QS +Y F SDEKIEDLGRGAV+RLIGNLGMGRYAHRFRAFAVTGSDLASCTEEDLVQIGVSFRPHR+RLLKEIA RK R + RGREK + + ++ I T ST+ +HD P A + + +A++ + TK + +A TNE DS+STSTACT YE AVP TV DC T RV G+ + S+ D G+ + SA V S ++ G D+S+ G G S+ G + R Q+ S G ++V F + D SA +G T LKGTLQM GVR MKLA+ DPFLQVKACDQLRR NV G GAEASWDDAV+SFSVTDQ L SDGV IELCCGN+G+QDL ASG IPGDVT++L+CRL+S + R AD + G+SA ++ SLAV VRLFAE GG++AGVCTLNL F+ D G +A+ ED + + Q EA+R+ ET E++ + + A AP +G E R+SS LL+ TA+HIEAIEEVCQ +Q E +D + + E D LAS+T+ + A++I +SNR+ P + E++L KRRVKERTAA RVQAFARQRM QGIS IR AKAEVRRRKA+KQL AKR+ +++ AALQIQ+ XXXXXXXXX SAQS R+R R LLKT AR+ V++ LKQ LE CVA VME + R+A + Q L N + TG +A + A+ +ASA IL+A+D++ ++ D S++ L L+G T E+ AAV+ +D T E S EAES R+ EM A RR R + SH SP VV++GCT+R TQEL SRK EEAAT IQ+AFR WCL RQAR L RKT A I IQ + +++ EA + + RG+AA IQR VR R+A L+ L++++ K++E QR
Sbjct: 2 VVASRARSSSRPLNASAWLPPRVTRLERETHDLLTACRKAGRCKGDAARGYSATSHSGRMADGTPPPRSGERQRNVEQSEAYE-LFWSDEKIEDLGRGAVVRLIGNLGMGRYAHRFRAFAVTGSDLASCTEEDLVQIGVSFRPHRLRLLKEIARRKGTRDSTSSRGREKRRRSTVVDASVTDGVIRTNSTSQQEHDRRPEKAIP------ALELQKPMEAVSTSHTKGKTNALHDVPPTAPTNEVVDSSSTSTACTPYEDAVPSTVGSAPIGPDCTTTPRVAGNNTRPSTANMGD--GEREVSPSALVEMSEPLQLNGRDDSAGVDGDGHPSARGE-IVSRPHQVEDSDMPPGGGSLVDFVRFPDASAAARGGNTPGLKGTLQMSGVRAGGMKLAIGNNDPFLQVKACDQLRRTNVVMGTGAEASWDDAVLSFSVTDQALTSDGVLIELCCGNVGSQDLVASGTIPGDVTMRLICRLRSKSVGRGRACADNNVAGDSASANGGSSLAVEVRLFAEPGGKDAGVCTLNLNFRQDEGEEVANGVEDAQLPGYAMQDEAQRKLETTEEEQIPLAIAAPGVAVTADQTRAGAPTDGAERRQSSLVLLQETARHIEAIEEVCQLVRQQHELADGAGQPEGGDDTPVLASQTQSEPPASTIGQRESEVDSSNRQETQAAEEAPRPQD-EDILTXXXXXXXXXXXXXXXXXXXXXKRRVKERTAAKRVQAFARQRM-----------------------------------------------------------------------------------QGISGIREAKAEVRRRKAQKQLRAKREKEKDDAALQIQSFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQSHVRRKRARLRLLKTVARVAVKEVLKQGLELCVAIVMEEKGRSAPNVRGQGLTNAEEGETGDGSWSASREPSAEAMIASALILNAYDQQHTKSDGIRDASHSPLS-GETELEGGTNPEAIAAVSRRASDGNHTHDEISASGLQEIEAESLRKAEMLAXXXXXXXXXXXXXXXXXXXIVRR---RNNPSSHASPAVVASGCTSRITQELTASRKYEEAATRIQQAFRGWCLARQARTLIERKTQAAIAIQ----------------------LVLEIEAEAGE-IARGKAAVRIQRAVRMRQARDLVGALKQQRDAESQLKLREEEQR 1094
BLAST of mRNA_H-canaliculatus_F_contig1015.169.1 vs. uniprot
Match: A0A6H5KXH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXH9_9PHAE) HSP 1 Score: 497 bits (1279), Expect = 3.630e-139 Identity = 434/1017 (42.67%), Postives = 558/1017 (54.87%), Query Frame = 1 Query: 979 IRLLKEIAIRKDQRHGSGIRGREKSTYNATETWATSE--INTTSTAPDQHDSFNTLVAPGQIDPSAPDQRGNPKAITATSTKDERSASKKPSDAGRTNEATDSTSTSTACTTYERAVPPTVEPTSFAQDCVPTARVEGDKSHGSSGGKYDRGGKETLLMSAKVAGSRRIVGEDNSSRACGTGQNSSEGTGLTRRQVQMPGSGEFHGQRTVVPFAQAHDKSAKQGL-TTSELKGTLQMCGVRTADMKLALVGRDPFLQVKACDQLRRINVAAGAGAEASWDDAVVSFSVTDQTLPSDGVQIELCCGNIGAQDLFASGCIPGDVTLQLLCRLQSDGLESVRPSADESAGGNSAVSHASGSLAVLVRLFAEAGGEEAGVCTLNLKFKPDNGAVLASEAEDRRS---SEQTEARREPETAAVEEMEV------------EALATAP-EGVEHRRSSSTLLKGTAKHIEAIEEVCQHAYRQQEHSDQSDRGEAQQD---LASRTEIQSSAASI--------TSNREAKAVGGVPPSLEKVENVLAPHDAAVILQSHTRRRAAKRVAKRRVKERTAANRVQAFARQRMDVSKVRQARERELATMHQERCDAVVRLQGTARRRIAAKAVQXXXXXEAEL----AKRDAEAAQTLQGFARHQLRKRARRRQV-AATKMQGISSIRAAKAEVRRRKAEKQLEAKRKSDEEAAALQIQTAVRRQRAAHEQHLVQSRQRNXXXXXXXXXARSRSAQSKACRQRGRQALLKTAARITVQDALKQALENCVARVMEMRRRAASDCLRQALGNQRDVATGATYSTAPVKKDAKTTVASACILHAFDKKQRPTNEAADESYTSL---PEAGLSLKGSTKIESDAAVTLATADDAPTEKENSELARLMD-EAESFRQLEMAAAAEEQRTAARRIQGLCRKRRARRKTDRRDTLSHSPPVVSAGCTTRFTQELMDSRKSEEAATHIQRAFRTWCLVRQARGLSARKTTAVICIQQATRSRTAFHRVADLRAKQR 3912
+RLL+EIA RK R + RG EK + + ++ I T STA +HD P + P+ Q+ +A++ + TK + A TNE + +STSTACT YE A+ +V+ DC T R G+ S+ + + L +++ ++ G D+S+ G S+ G + RQ Q S G +V F + D SA + T LKGTLQM GVR M+LA+ DPFLQVKACDQLRR NV G GAEASWDDAV+SFSVTDQ L SDGV IELCCGN+G++DL ASG IPGDVT+QL+CRL+S + R AD++ G+SA + SLAV VRLFAE GG++AG+CTLNL F+ G +A+ +D + Q EA+RE ET E++ + + A AP +G E R+SS LL+ TA+HIEAIEEVCQ +Q + +D + + E D LAS+T+ + A++I +SNR+ P L+ KRRV ERTAA RVQAFARQRM VSKVR+AREREL M QER +AVVR+Q TARRRIA VQ A+ AKR AA LQGFAR +L +++RRR+ AAT +QGIS IR AKAE RRRKA+K E AALQIQ+ XXX ARSRSAQS R+R R L+KT AR+ V + LKQ LE CVA VM + R A Q L N + ATG +A + A+ +ASA IL+A+D++ + S+ L PE L+G T E AAV+ + T E S +RL + EAES R+ EM AAA RRIQ LCRKR R+ + SP VV++GCT+R T+EL SRK EEAAT IQ+A R C RQAR L RKT A I IQ R R A RVA L AK++
Sbjct: 13 LRLLREIARRKGTRDSTSSRGGEKRRRSTVVDASATDGIIRTNSTAQQKHDR-----RPDKAIPALELQKPM-EAVSTSHTKGKTDALHDVPPTAPTNEVVELSSTSTACTPYEDALLSSVDSAPIVPDCASTPRAAGNNIRPSTANMEGGEREVSPLAVVEMSEPLQLKGRDDSADVDGDDHPSARGE-IVHRQHQAQDSSMPPGGGGLVDFVRFPDASAAARVGKTPGLKGTLQMSGVRAGGMQLAIGDNDPFLQVKACDQLRRTNVVTGTGAEASWDDAVLSFSVTDQALTSDGVLIELCCGNVGSKDLVASGTIPGDVTMQLVCRLRSKNVGRGRACADDNVAGDSASASGGSSLAVEVRLFAEPGGKDAGLCTLNLDFRQSQGEEVANGVDDVHLPGYAMQDEAQREIETTEEEQIPLAIAAPGVTVTAGQTRAGAPTDGAERRQSSLVLLQETARHIEAIEEVCQLVRQQHKLADGAGQPEGGDDTPVLASQTQSEPPASTIGQQESEVDSSNRQETQAAEEAPRLQDEXXXXXXXXXXXXXXXXXXX-----XXKRRVIERTAAKRVQAFARQRMQVSKVRKARERELMMMEQERNNAVVRIQSTARRRIATNDVQRRRSEVADRRKTQAKRSEGAACVLQGFARRRLSEKSRRRKHRAATTLQGISGIREAKAEARRRKAQKXXXXXXXXXXEDAALQIQSFAXXXXXXXXXXXXXXXXXXXXXVKLQRMARSRSAQSHVRRKRSRLTLVKTVARVAVNEVLKQGLELCVAIVMGEKGRPAPTVHGQGLTNAEEGATGDGSWSATREPSAEAMIASARILNAYDQQHTKADGIRGASHPPLSGEPE----LEGGTNPEDIAAVSRRASGGNHTHNEIS-ASRLQEIEAESLRKAEMLAAAXXXXXXXRRIQRLCRKRIVHRRNN--PLPQASPAVVASGCTSRITEELTASRKCEEAATCIQQALRGCCRARQARTLIERKTQAAIAIQLVVRRRVAVRRVAYLTAKRK 1010
BLAST of mRNA_H-canaliculatus_F_contig1015.169.1 vs. uniprot
Match: A0A7S0HJK8_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HJK8_9EUKA) HSP 1 Score: 62.4 bits (150), Expect = 4.670e-6 Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 1 Query: 802 RSDEKIEDLGRGAVIRLIGNLGMGRYAHRFRAFAVTGSDLASCTEEDLVQIGVSFRPHRIRLLKEIA 1002
R+ + +L G V ++ +LG+GRYA + G DLA CT++DL +IG+ FRPHR+ LL+E+A
Sbjct: 38 RATTPLVELNEGDVACVLHSLGLGRYADVCMVVPLRGRDLAHCTDDDLKEIGIRFRPHRLSLLEEVA 104
BLAST of mRNA_H-canaliculatus_F_contig1015.169.1 vs. uniprot
Match: A0A836CN96_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN96_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 4.550e-5 Identity = 47/147 (31.97%), Postives = 62/147 (42.18%), Query Frame = 1 Query: 592 AWLPPRVTRLERETHDLLTACRKAGR-------DTGYAAR---LNDEDCRHGCTPEGQSPGRSGECRRISGQSNSYGGSFRSDEKIEDLGRGAVIRLIGNLGMGRYAHRFRAFAVTGSDLASCTEEDLVQIGVSFRPHRIRLLKEIA 1002
+W V R+ ++ DLL +C + R DT AA D CTP +G + + G G V + LG+G YA F V G DL +C +EDL GV FRPHR+RLL+EIA
Sbjct: 121 SWKVDAVHRVHAQSADLLRSCSPSRRRHKRPLCDTNKAAADGGSGRSDVAQQCTPHDDVSLTAG--------------------NLLEAGPGQVCMFLRLLGLGAYAPGFAKRGVVGVDLLACEDEDLAACGVDFRPHRLRLLEEIA 247 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1015.169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1015.169.1 >prot_H-canaliculatus_F_contig1015.169.1 ID=prot_H-canaliculatus_F_contig1015.169.1|Name=mRNA_H-canaliculatus_F_contig1015.169.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=2374bp KNSDTAPPCSLLASGVPRIVILDENAVYDHYMRRLNRVWMRRMKASRNQAback to top mRNA from alignment at H-canaliculatus_F_contig1015:6618..15844- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1015.169.1 ID=mRNA_H-canaliculatus_F_contig1015.169.1|Name=mRNA_H-canaliculatus_F_contig1015.169.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=9227bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1015:6618..15844- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1015:6618..15844- >mRNA_H-canaliculatus_F_contig1015.169.1 ID=mRNA_H-canaliculatus_F_contig1015.169.1|Name=mRNA_H-canaliculatus_F_contig1015.169.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=14244bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1015:6618..15844- (Hapterophycus canaliculatus Oshoro5f female)back to top |