mRNA_H-canaliculatus_F_contig1194.1700.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1194.1700.1
Unique NamemRNA_H-canaliculatus_F_contig1194.1700.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Match: D7G710_ECTSI (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G710_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.020e-36
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 2 
Query:   50 MSTGYRSSKGVLITCDVPTKQFIMSLDSRLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPRS 259
            MSTGYRSSKGVLITCDVPTKQFIMSLD+RLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPR+
Sbjct:    1 MSTGYRSSKGVLITCDVPTKQFIMSLDARLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPRT 70
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BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Match: A0A835ZC95_9STRA (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC95_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.490e-14
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 2 
Query:   50 MSTGYRSSKGVLITCDVPTKQFIMSLDSRLA--CVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVR 250
            MS    S KGVLITCDVPTKQFI+ L+S+ A   +++DLD TH+FV+  +V EI+ +LE+L E NVYVR
Sbjct:    1 MSNVRTSRKGVLITCDVPTKQFILHLNSKQAQGFIINDLDETHLFVEASAVHEIREQLERLQEMNVYVR 69
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BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Match: A0A383WPN6_TETOB (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WPN6_TETOB)

HSP 1 Score: 57.8 bits (138), Expect = 2.630e-7
Identity = 26/67 (38.81%), Postives = 46/67 (68.66%), Query Frame = 2 
Query:   68 SSKGVLITCDVPTKQFIMSLDS-----RLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRP 253
            ++ G L+TCDVPTK+F++ L++     + A ++ +LD TH+ VK+D V+ +Q +++  + KNVY  P
Sbjct:    4 ATSGALLTCDVPTKEFLVWLNNQNKATKRAFIIKELDDTHLLVKEDMVEFVQEQVKAFNNKNVYTPP 70
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BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Match: A0A6T6HXU1_9STRA (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6HXU1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.840e-7
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 2 
Query:   68 SSKGVLITCDVPTKQFIMSLDSRLAC----VVSDLDATHVFVKKDSVKEIQRELEQLHEKNVY 244
            +S G LITCDVPTKQ+I  L+   A     ++ DLDATH+ VKK +  EI+R +E   ++NV+
Sbjct:   36 ASAGYLITCDVPTKQYIQYLNEMKAVDKKFIIEDLDATHLLVKKKARAEIERRVESWMDENVF 98
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BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Match: A0A2V3IN38_9FLOR (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN38_9FLOR)

HSP 1 Score: 58.2 bits (139), Expect = 5.200e-7
Identity = 26/62 (41.94%), Postives = 45/62 (72.58%), Query Frame = 2 
Query:   68 SSKGVLITCDVPTKQFIMSLDSRLA--CVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYV 247
            ++ GVLI+CD+P KQF++ +D +     ++SDLD THV VK+ ++  I+ +L++L+E+N Y 
Sbjct:   50 ATAGVLISCDIPVKQFLLHVDEKDTGKFIISDLDETHVLVKESALDYIKSQLDKLYEENQYT 111
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BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Match: M2VWH3_GALSU (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VWH3_GALSU)

HSP 1 Score: 56.6 bits (135), Expect = 5.940e-7
Identity = 27/60 (45.00%), Postives = 44/60 (73.33%), Query Frame = 2 
Query:   74 KGVLITCDVPTKQFIMSLDSRLA---CVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVY 244
            +GVLITCD+P KQFI+ LD   A    V+++LD T +F++  ++K +Q +LE+L+E+N +
Sbjct:    6 RGVLITCDIPMKQFILKLDEDQAPNRFVIANLDETSLFIQSWALKLVQEKLEELYEENYF 65
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BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Match: I0Z2U2_COCSC (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z2U2_COCSC)

HSP 1 Score: 53.5 bits (127), Expect = 7.670e-6
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 2 
Query:   74 KGVLITCDVPTKQFIMSLDSRLAC----VVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPR 256
            +GVL+ CDVPTK+FI+SL+         V+ DLD T +FV+   V+ +++ L++ +E+N Y  PR
Sbjct:    2 RGVLLQCDVPTKEFILSLNDSKPTNERFVILDLDDTRLFVQPTVVEWLEKRLKEFNEENTYQPPR 66
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BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Match: A0A1X6PEZ7_PORUM (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PEZ7_PORUM)

HSP 1 Score: 52.8 bits (125), Expect = 1.360e-5
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 2 
Query:   68 SSKGVLITCDVPTKQFIMSLDSRLA---CVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVY 244
            ++ GVL+TCDVP KQF++ LD+  A    +V+ LD TH+F+   +V  I+ +LE+L  +N Y
Sbjct:    4 ATHGVLVTCDVPVKQFLLKLDNDRAPDRFIVAKLDETHLFIHAWAVDMIKDQLERLFAENQY 65
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BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Match: A9RU41_PHYPA (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RU41_PHYPA)

HSP 1 Score: 50.4 bits (119), Expect = 9.890e-5
Identity = 22/64 (34.38%), Postives = 41/64 (64.06%), Query Frame = 2 
Query:   74 KGVLITCDVPTKQFIMSLDSRLA----CVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRP 253
            KG+L+TCD+P  Q ++S++  +      +V  LD TH++V+ D  K +Q +L++  ++N Y +P
Sbjct:    6 KGILVTCDIPMAQLLISINDSMPNAHKFIVYMLDDTHIYVQPDVGKMLQSKLQEFRDQNTYEKP 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G710_ECTSI1.020e-3697.14General transcription and DNA repair factor IIH su... [more]
A0A835ZC95_9STRA4.490e-1457.97General transcription and DNA repair factor IIH su... [more]
A0A383WPN6_TETOB2.630e-738.81General transcription and DNA repair factor IIH su... [more]
A0A6T6HXU1_9STRA4.840e-747.62General transcription and DNA repair factor IIH su... [more]
A0A2V3IN38_9FLOR5.200e-741.94General transcription and DNA repair factor IIH su... [more]
M2VWH3_GALSU5.940e-745.00General transcription and DNA repair factor IIH su... [more]
I0Z2U2_COCSC7.670e-641.54General transcription and DNA repair factor IIH su... [more]
A0A1X6PEZ7_PORUM1.360e-543.55General transcription and DNA repair factor IIH su... [more]
A9RU41_PHYPA9.890e-534.38General transcription and DNA repair factor IIH su... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1194contigH-canaliculatus_F_contig1194:13695..16873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTFIIH subunit TTDA/Tfb5
Ec32 orthologEc-01_011510.1
Exons3
Model size1139
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1194.1700.1prot_H-canaliculatus_F_contig1194.1700.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1194 14572..16824 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928898.0639327-UTR-H-canaliculatus_F_contig1194:13694..145711622928898.0639327-UTR-H-canaliculatus_F_contig1194:13694..14571Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1194 13695..14571 -
1696845605.5095565-UTR-H-canaliculatus_F_contig1194:13694..145711696845605.5095565-UTR-H-canaliculatus_F_contig1194:13694..14571Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1194 13695..14571 -
1622928898.112288-UTR-H-canaliculatus_F_contig1194:16824..168731622928898.112288-UTR-H-canaliculatus_F_contig1194:16824..16873Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1194 16825..16873 -
1696845605.5578642-UTR-H-canaliculatus_F_contig1194:16824..168731696845605.5578642-UTR-H-canaliculatus_F_contig1194:16824..16873Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1194 16825..16873 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928898.0787303-CDS-H-canaliculatus_F_contig1194:14571..146261622928898.0787303-CDS-H-canaliculatus_F_contig1194:14571..14626Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1194 14572..14626 -
1696845605.5192611-CDS-H-canaliculatus_F_contig1194:14571..146261696845605.5192611-CDS-H-canaliculatus_F_contig1194:14571..14626Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1194 14572..14626 -
1622928898.0925913-CDS-H-canaliculatus_F_contig1194:14955..150691622928898.0925913-CDS-H-canaliculatus_F_contig1194:14955..15069Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1194 14956..15069 -
1696845605.5309775-CDS-H-canaliculatus_F_contig1194:14955..150691696845605.5309775-CDS-H-canaliculatus_F_contig1194:14955..15069Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1194 14956..15069 -
1622928898.1026976-CDS-H-canaliculatus_F_contig1194:16780..168241622928898.1026976-CDS-H-canaliculatus_F_contig1194:16780..16824Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1194 16781..16824 -
1696845605.5466309-CDS-H-canaliculatus_F_contig1194:16780..168241696845605.5466309-CDS-H-canaliculatus_F_contig1194:16780..16824Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1194 16781..16824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1194.1700.1

>prot_H-canaliculatus_F_contig1194.1700.1 ID=prot_H-canaliculatus_F_contig1194.1700.1|Name=mRNA_H-canaliculatus_F_contig1194.1700.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=71bp
MSTGYRSSKGVLITCDVPTKQFIMSLDSRLACVVSDLDATHVFVKKDSVK
EIQRELEQLHEKNVYVRPRS*
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mRNA from alignment at H-canaliculatus_F_contig1194:13695..16873-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1194.1700.1 ID=mRNA_H-canaliculatus_F_contig1194.1700.1|Name=mRNA_H-canaliculatus_F_contig1194.1700.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3179bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1194:13695..16873- (Hapterophycus canaliculatus Oshoro5f female)
CGTGAGTTTACAGCCCTACGCGCCGTCATCTTTGCACAAGTGGGTGGCGA
TGAGCACAGGATACCGAAGCAGCAAAGGCGTTCTTATCACCTGGTAGGGA
GATAGGTGGTAGCGGGAGAATCTTGTGCTTTGACCATGACGTACGTTCGA
TCGTTTTTTTCAGTCCGCTCTCTCAAGTCAACAAATTTGCGAACCTTTGT
TCAGTATCCAAAGTCTTGTTGCCTCGCATGGATGGTTATCGATGGGTCAA
GTTTGGAGCCCTGTTCAGCCTACAGGCAGTAAAACATGAGACCTCTGCAA
GCAATCAGAGCTCCGTTCAGCACCAACATCAGCACCAGCACTACTCCCAG
AACAGGCTGAATCGATTGTTTTCCGGTACGACAAGGGTACGATTCTCCTG
TCCAATAGACTTGACCGGACGAGGAGTACTGAGGCTGTCCAAGGACATCT
ACAAGTGGACCCGTACGGTTTGGAGAGATAGTTCTACCACCGAGGGGCCA
CGTTCCTTTATCGATGGCCTCAAGCTTCTTCTGAGCGCTGGTTGTGTCTT
GGAGATCAGAAATGTCCGTACGCCCATCATTGGCATTTGAACACACATCG
CCAAACCAAAGTTGAACAGGGGGAAGCTTCAGCAACACTTGTCACAATTG
TACACACGCACGATTCTAACGAACTGAAGGTTCGCGAAGGCACTGTTTTT
GTCTCTTACCAATTTATTCTCTCGAGCGCAACAAAACAAGTAAACAAGGG
CCCTGGAACTAAATGAGAGGAAATGTCATGCCGAACTGCTTGAAAATACT
AGTGGCTTGCCTCCGCGACATGGTATACAGAGCACAGGATGTTGGTTTGC
AACACCAAAAGGAATTTATTGCCACCAGCCCATTTGGATGCACAGCATCA
TACCTTGAACGCGAGCAGCTCACGTTTCGCAGCTATATTGAGAGAGAGGA
GAGTGGCAGAAACCGAGAGGTCCCAATAGGCCACTTGCCTTGTAGACCGA
GCGGGTCTTCTGGGGTATCATGCCGTTCCATCTTCGTGGACCAAGAGATA
ACACTTCAACATCCCCGGGGCGAGGGAGGTATCGAGGTTCCATCCCTAAG
GTCCCACTGATATCGTCTCCCTGTATAGTTCCCAAGATAATTTAGACCTC
ACGGGGATGTGGGAGCAAGAAGGCAATAAGGAAATGGAAAAGGGTAGCGG
TTGGTTGTCGACAGCATACACCTGATTTCTTCAGATGCCGTGCCGGGGAT
TCCCGTGGTATACTGCGGGCACCACGATTGCTATCAACCAGGTGACGTCA
AAGGATCCCACTTTTAATCCACCACGAGGCGTCAATTCCGGTGTAGATAC
AAGCCTACCATGCGGGAACAATCATTACATGAATTTAGACAAACCTGTTG
CTTCTGTTGCTGAGCCCGAACAAAAACTTATCCCGCCTCACAGGCTGATC
TTCCTCGCACGTGTGCCCTTCACACCGGGTGAATCCGATTTTCGACAAAT
CTCCGCGTTCTCTACCAACAAAATCTAGCCTCACAGTTCTATACCAGGGC
ACCGCCACCATTATGAACAGCCATCGTGACTGGTCTCACTACCCTGCCTA
CCACCCTTGAACCCCTCGGTTCCACGTGCCTAGTGTTGCCGCACTCGTTG
TTCTAACCTACTTGCTGTGGGCTTTGAGGAACTAGTGCTCTTGCTGGTCG
CGGGGCTTTGACGTGCTGATTCGACGTTGCTGCTCCGTGCTCTAATCTTT
TTCGGCTCACTCACGGTGTTTTTGTGTTTTGTCCGCCTTATCGTTGTCGT
CCAGCGATGTGCCTACCAAGCAGTTCATCATGAGCCTCGACTCGCGCCTG
GCGTGCGTGGTGTCCGATCTTGACGCCACCCATGTGTTCGTCAAGAAAGA
CAGCGTGAAGGAGATACAGTGAGTGCAAAGTGTGTTTTCCTACATATGTG
GCAGTGGCGGCGCTTCGGAGGCATGAGGAGTCTACGACTGCCCTCTCCAA
GGAAATTTACAGGCATCCCTTCTCCGAGAAACAGCAACGTGGTCTCGTTT
CGAACCGTCACCCCTGTAGAATAACGTGGGAGCATGACACAGAAAACAGC
TTGCAGCTTGTCAGGTTTCAAAATACTGAGCGATTTCGCTGCAGGGTGAC
CTACAGACCGAAACCAGAGGACGGATGCTTGATTCGATCGAACTTCGGAC
CACCTGTATCAGCACAATTTTTCCGTACCTGCGCAATTTGTTCTCAGGCG
TGAGCTGGAGCAGCTGCACGAGAAGAACGTCTACGTGCGGCCTCGGTCAT
GACAGCGGCCATGCAGCACCGCCGGGCACACTCGCGCGCGGCATCAAATG
CTCGAATTCTCCCGGAACTACTGGTACACCAACGCCACATGGGGTAGCTG
TGCAATCCGCTTTGCAAAGATCCGACATACATCGTCTCCCAAGAGTCACC
AGGGGAGCGGTCAGGGTTATGTGGTGGCCGCCCAGGAAAGAGTCGCGGCA
GATCCCATACTTCATGCTGCAAATGAGTGTTTTAGAGTGCGGAATAGTAA
AAAGTTGGTTGTTTCTGGTAAAACAACATGAGTCTGGTGCGCGTCAGAGT
TGGCAATCCTACCTCATTGCCATGCTGTTTGTGTTTTGTGTCATTTATGC
GTAGCCCCGGCGGAGTCAAACAGATGGGAAATTCCAAGGAAACAAAGTTT
GGGCAATAAACCCGACACCTACTGTAGGACCAAAACAAAATGGGGTGGGC
AGTTTTTGACTTGGATTTCGATGGCTATCGTCGTCGTTAGCCCCCACTAT
ATTACGAAGAAAGGATATTTGGTTGAGAAGACTTCGAGAGTGAAACAAGA
AAATTCTCCGACGTAGGGCACAGGAATAATAGTACACATCAGTAGTTGGA
GATGTAGCACCAAGAGGTGCAGGTACGCGCCGCTAGGCAAGAGCTTCGTT
ATTGAGAAATCCAGGTTTCATTTTATTTAAATGCTAGACCTGGGAGTAAT
TAAATAGGAACGAAAATCTAAACCGCTGCAGTTGCTTTTGATTGCCACAG
AGGAAATAAGAACCCATGTTCACGCTAGAGGAGGTTATTCCCAGGCAAGT
AAAGTGCCCTCCGTAGAGTCAGCGCATTGAGGAAGCTCTTCTTGTGCCTG
TGGCCAGCGCACACTAAATACCAGGTACA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1194:13695..16873-

>mRNA_H-canaliculatus_F_contig1194.1700.1 ID=mRNA_H-canaliculatus_F_contig1194.1700.1|Name=mRNA_H-canaliculatus_F_contig1194.1700.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=426bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1194:13695..16873- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCACAGGATACCGAAGCAGCAAAGGCGTTCTTATCACCTGATGAGC
ACAGGATACCGAAGCAGCAAAGGCGTTCTTATCACCTGCGATGTGCCTAC
CAAGCAGTTCATCATGAGCCTCGACTCGCGCCTGGCGTGCGTGGTGTCCG
ATCTTGACGCCACCCATGTGTTCGTCAAGAAAGACAGCGTGAAGGAGATA
CACGATGTGCCTACCAAGCAGTTCATCATGAGCCTCGACTCGCGCCTGGC
GTGCGTGGTGTCCGATCTTGACGCCACCCATGTGTTCGTCAAGAAAGACA
GCGTGAAGGAGATACAGCGTGAGCTGGAGCAGCTGCACGAGAAGAACGTC
TACGTGCGGCCTCGGTCATGAGCGTGAGCTGGAGCAGCTGCACGAGAAGA
ACGTCTACGTGCGGCCTCGGTCATGA
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