prot_H-canaliculatus_F_contig1015.168.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-canaliculatus_F_contig1015.168.1
Unique Name	prot_H-canaliculatus_F_contig1015.168.1
Type	polypeptide
Organism	Hapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length	135

Homology

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BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Match: D8LBT8_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT8_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 5.350e-82
Identity = 118/134 (88.06%), Postives = 127/134 (94.78%), Query Frame = 0

Query:    1 MLATVGVLVQSFVHFPDPERSAFSNTRPIGALLQVWEERPVILFAIVAVMGLIELTVGREDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRLASLGITGILAQELVTHEGPVEQLLRGDINPFGKY 134
            MLATVGVLVQSFV FPDP+RSAFSNTRP+GAL QVW ERPVIL  IVA+MGLIELT+GREDYGSSEAEPGKLG+FWQ ARPEDPQ+WRRRQLQELKHGRLASLGITG+LAQELVTHEGPVEQLL+GDINPF +Y
Sbjct:   39 MLATVGVLVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGDFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPFHEY 172

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BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Match: A0A6H5KVZ6_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVZ6_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 9.600e-81
Identity = 118/134 (88.06%), Postives = 126/134 (94.03%), Query Frame = 0

Query:    1 MLATVGVLVQSFVHFPDPERSAFSNTRPIGALLQVWEERPVILFAIVAVMGLIELTVGREDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRLASLGITGILAQELVTHEGPVEQLLRGDINPFGKY 134
            MLATVGVLVQSFV FPDP+RSAFSNTRP+GAL QVW ERPVIL  IVA+MGLIELT+GREDYGSSEAEPGKLGE WQ ARPEDPQ+WRRRQLQELKHGRLASLGITG+LAQELVTHEGPVEQLL+GDINPF +Y
Sbjct:   94 MLATVGVLVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGELWQTARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPFHEY 227

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BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Match: A0A835ZAI4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI4_9STRA)

HSP 1 Score: 132 bits (332), Expect = 3.740e-36
Identity = 70/132 (53.03%), Postives = 90/132 (68.18%), Query Frame = 0

Query:    1 MLATVGVLVQSFVHFPDPERSAFSNTRPIGALLQVWEERPVILFAIVAVMGLIELTVGREDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRLASLGITGILAQELVTHEGPVEQLLRGDINPFG 132
            MLAT GVLVQ++VH PD   + FSN RPIGALLQV ++RPV    I+  +GL+ELT G +DY +    PG LG F    +P+D       QL+ELK+GRLA +GI G+L QE +T +GP+EQLL G  +PFG
Sbjct:   84 MLATFGVLVQTYVHLPD---AVFSNPRPIGALLQVLDQRPVAAIQILLAIGLLELTAGAQDYANKA--PGDLGRFGDAFKPDDAGELAELQLKELKNGRLAMMGIMGMLVQEGLTKQGPIEQLLVGHTSPFG 210

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BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Match: D5KBP8_ELYCH (Light harvesting complex protein 3 (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=D5KBP8_ELYCH)

HSP 1 Score: 128 bits (322), Expect = 1.720e-35
Identity = 64/122 (52.46%), Postives = 87/122 (71.31%), Query Frame = 0

Query:    1 MLATVGVLVQSFVHFPDPERSAFSNTRPIGALLQVWEERPVILFAIVAVMGLIELTVGREDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRLASLGITGILAQELVTHEGPVEQ 122
            MLAT+GV VQ+ +H PDP    FSN RPIGALLQV+ ERP+ ++ I+  +G IEL++G++DY +    PG LG F   A+P DP  W + QL+ELK+GRLA + I G+L QE +T +GP+EQ
Sbjct:   28 MLATLGVFVQNSIHLPDP---VFSNPRPIGALLQVFAERPIAIWQIILAIGAIELSIGKQDYENKA--PGDLGSFGDFAKPSDPIEWEKVQLRELKNGRLAMMAIMGMLVQEGLTKQGPLEQ 144

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BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA)

HSP 1 Score: 123 bits (308), Expect = 7.270e-33
Identity = 63/132 (47.73%), Postives = 84/132 (63.64%), Query Frame = 0

Query:    1 MLATVGVLVQSFVHFPDPERSAFSNTRPIGALLQVWEERPVILFAIVAVMGLIELTVGREDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRLASLGITGILAQELVTHEGPVEQLLRGDINPFG 132
            MLAT+GVLVQSF H PDP    FSN RP+ AL Q+  ERPV  + I   +G  EL++G++DY +    PG +  F    +P D   W + QL+ELK+GRLA +   G+  QE +T +GP+EQL  G I+PFG
Sbjct:   56 MLATLGVLVQSFNHLPDP---VFSNPRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKA--PGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPFG 182

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BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Match: A0A6H5JT49_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT49_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.370e-31
Identity = 70/134 (52.24%), Postives = 87/134 (64.93%), Query Frame = 0

Query:    1 MLATVGVLVQSFVHFPDPERSAFSN-TRPIGAL--LQVWEERPVILFAIVAVMGLIELTVGREDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRLASLGITGILAQELVTHEGPVEQLLRGDINPF 131
            MLA  G+LVQSFVHFP       SN  RP+  L  L   E   V+LF +    G++ELT+G++DY   +  PG+LGEF   A+P D + W + Q+ ELKHGRLA LG+ G L QELVT EGPVEQLL G+I PF
Sbjct:  104 MLAVTGILVQSFVHFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGT--GVVELTIGKQDY--VDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPF 233

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BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Match: W7TRI0_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRI0_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.750e-30
Identity = 63/132 (47.73%), Postives = 84/132 (63.64%), Query Frame = 0

Query:    1 MLATVGVLVQSFVHFPDPERSAFSNTRPIGALLQVWEERPVILFAIVAVMGLIELTVGREDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRLASLGITGILAQELVTHEGPVEQLLRGDINPFG 132
            MLA +G LVQS+ H PD     FSN RP+GAL Q+  ERP+ +  IV  + LIE+T G++D    E  PG+LG F +  +PE        QL+ELK+GRLA + I G   QEL+T +GP+EQ+  G I+PFG
Sbjct:   44 MLACLGTLVQSYTHLPD---DVFSNPRPLGALGQLLSERPLAILQIVIAITLIEVTSGKQD---PELAPGQLGRFGEAFKPEGEAEMAAVQLKELKNGRLAMVAIIGQWVQELLTGQGPIEQITSGHISPFG 169

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BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Match: A0A0G4FFG9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FFG9_VITBC)

HSP 1 Score: 109 bits (272), Expect = 3.800e-27
Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 0

Query:    1 MLATVGVLVQSFVHFPDPERSAFSNTRPIGALLQVWEERPVILFAIVAVMGLIELTVGREDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRLASLGITGILAQELVTHEGPVEQLLRGDINPFG 132
            M+A +GV+VQ++   PDP    F+N RP+ A++QVW++RP  +  I+  +G  EL   R+   S E  PG L  F    RP D   +   Q +ELK+GRLA +GI+G+L QE +T +GP+EQ+  G I+PFG
Sbjct:   84 MMAVLGVIVQTYFQLPDP---VFNNPRPLEAIVQVWQQRPEAIIQILLAIGATELYFLRQ---SPEDPPGSLQNFGAAFRPRDEAKFEELQRKELKNGRLAMIGISGMLVQEALTGQGPLEQIQVGHISPFG 209

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BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Match: A0A0G4GDB0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDB0_VITBC)

HSP 1 Score: 102 bits (255), Expect = 1.300e-24
Identity = 62/132 (46.97%), Postives = 81/132 (61.36%), Query Frame = 0

Query:    1 MLATVGVLVQSF-VHFPDPERSAFSNTRPIGALLQVWEERPVILFAIVAVMGLIELTVGREDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRLASLGITGILAQELVTHEGPVEQLLRGDINPF 131
            MLA +G  VQS  VH PDP    FS  RP+ AL +V  ERP     IVA +  IEL  GR+DY +    PG LG F    +  DP+ +R+ QL+ELK+GRLA +GI G++ QE +T +   EQ+  G+INPF
Sbjct:   87 MLACLGYFVQSAGVHLPDP---VFSEPRPLSALTKVLTERPWAAAQIVAAIAAIELGPGRQDYENKA--PGDLGYFGDSFKNSDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQSVWEQIGSGNINPF 213

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BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Match: A0A0G4F0S3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F0S3_VITBC)

HSP 1 Score: 97.4 bits (241), Expect = 1.860e-22
Identity = 53/136 (38.97%), Postives = 82/136 (60.29%), Query Frame = 0

Query:    1 MLATVGVLVQSFVHFPDPERSAFSNTRPIGALLQVWEERPVILFAIVAVMGLIELTVGR-----EDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRLASLGITGILAQELVTHEGPVEQLLRGDINPF 131
            MLA +G LVQ+    PD   S F    PI A+ ++W ERP+ +  I+  +  IE+   +     ED G  + +P  LG      +P DP+ +R+ QL+ELK+GRLA + + G+ AQE +T +GP++Q+L G++NPF
Sbjct:   96 MLAALGFLVQNIYQLPD---SPFQEANPINAVYKLWSERPLAIMQILTAIAAIEVLGNQVQLQTEDGGDLKWDP--LG-----IKPNDPEEFRKMQLRELKNGRLAMISVLGMTAQEALTDQGPIDQILTGNVNPF 221

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LBT8_ECTSI	5.350e-82	88.06	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5KVZ6_9PHAE	9.600e-81	88.06	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A835ZAI4_9STRA	3.740e-36	53.03	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
D5KBP8_ELYCH	1.720e-35	52.46	Light harvesting complex protein 3 (Fragment) n=4 ...	[more]
A0A835ZIK7_9STRA	7.270e-33	47.73	Chlorophyll a/b-binding protein domain-containing ...	[more]
A0A6H5JT49_9PHAE	1.370e-31	52.24	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
W7TRI0_9STRA	3.750e-30	47.73	Light-harvesting protein n=1 Tax=Nannochloropsis g...	[more]
A0A0G4FFG9_VITBC	3.800e-27	43.18	Uncharacterized protein n=2 Tax=Vitrella brassicaf...	[more]
A0A0G4GDB0_VITBC	1.300e-24	46.97	Uncharacterized protein n=2 Tax=Vitrella brassicaf...	[more]
A0A0G4F0S3_VITBC	1.860e-22	38.97	Uncharacterized protein n=2 Tax=Vitrella brassicaf...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 1..112 e-value: 2.4E-12 score: 47.7
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 1..134 e-value: 7.7E-19 score: 70.0
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 1..120
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 41..57
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..40
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 58..134
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 1..131
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..120

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig1015	contig	H-canaliculatus_F_contig1015:3757..5180 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90	2022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig1015.168.1	mRNA_H-canaliculatus_F_contig1015.168.1	Hapterophycus canaliculatus Oshoro5f female	mRNA	H-canaliculatus_F_contig1015 3447..6284 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-canaliculatus_F_contig1015.168.1 ID=prot_H-canaliculatus_F_contig1015.168.1|Name=mRNA_H-canaliculatus_F_contig1015.168.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=135bp
MLATVGVLVQSFVHFPDPERSAFSNTRPIGALLQVWEERPVILFAIVAVM
GLIELTVGREDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRL
ASLGITGILAQELVTHEGPVEQLLRGDINPFGKY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind