mRNA_H-canaliculatus_F_contig11928.1689.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11928.1689.1
Unique NamemRNA_H-canaliculatus_F_contig11928.1689.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11928.1689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11928contigH-canaliculatus_F_contig11928:2615..3874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size483
Cds size375
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11928.1689.1prot_H-canaliculatus_F_contig11928.1689.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11928 2723..3874 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928896.0911682-UTR-H-canaliculatus_F_contig11928:2614..27221622928896.0911682-UTR-H-canaliculatus_F_contig11928:2614..2722Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11928 2615..2722 +
1696845604.9271984-UTR-H-canaliculatus_F_contig11928:2614..27221696845604.9271984-UTR-H-canaliculatus_F_contig11928:2614..2722Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11928 2615..2722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928896.1042523-CDS-H-canaliculatus_F_contig11928:2722..27591622928896.1042523-CDS-H-canaliculatus_F_contig11928:2722..2759Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11928 2723..2759 +
1696845604.9452028-CDS-H-canaliculatus_F_contig11928:2722..27591696845604.9452028-CDS-H-canaliculatus_F_contig11928:2722..2759Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11928 2723..2759 +
1622928896.1199539-CDS-H-canaliculatus_F_contig11928:3523..37551622928896.1199539-CDS-H-canaliculatus_F_contig11928:3523..3755Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11928 3524..3755 +
1696845604.9566631-CDS-H-canaliculatus_F_contig11928:3523..37551696845604.9566631-CDS-H-canaliculatus_F_contig11928:3523..3755Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11928 3524..3755 +
1622928896.1350234-CDS-H-canaliculatus_F_contig11928:3768..38741622928896.1350234-CDS-H-canaliculatus_F_contig11928:3768..3874Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11928 3769..3874 +
1696845604.9668381-CDS-H-canaliculatus_F_contig11928:3768..38741696845604.9668381-CDS-H-canaliculatus_F_contig11928:3768..3874Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11928 3769..3874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11928.1689.1

>prot_H-canaliculatus_F_contig11928.1689.1 ID=prot_H-canaliculatus_F_contig11928.1689.1|Name=mRNA_H-canaliculatus_F_contig11928.1689.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=125bp
MASTSGRAPSEEGEVPDASSGAVKNSGDPATPTHGSTSGGSGGNAPSSSL
THGDGIGALAGHGSNGADGGRGSSGGGMRDSDGGGGEQQHISISINTWKH
SSPHLGNEGVPVIATWTTTASSTSR
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mRNA from alignment at H-canaliculatus_F_contig11928:2615..3874+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11928.1689.1 ID=mRNA_H-canaliculatus_F_contig11928.1689.1|Name=mRNA_H-canaliculatus_F_contig11928.1689.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1260bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11928:2615..3874+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCATCCTCCCGGCACGCGGCAACTGGCACGGCTCTTGGCGACGGCCCT
CGGAGCGGAAGGAAAAGGGATTGTTGGACGAAGGGACGGGTTGTAGTCGG
GGCGGTGGATGGCTAGCACCAGCGGTCGGGCCCCGAGCGAGGAAGGTATG
TGGCCTGGGTGGTAACTCCTCGTGTTACTCGATCGCCTCGAACCATGGAT
CTGTCGTGTGTTATCCCAGGGGTTTGTTTGGATGGCAAGGCCCTGTCGTC
GCCCTGACGCGGGGTCACCCGATTTTTTTGTTCGAGGGCCTACCGTTTGT
CAAACTTGATATCCTCCCGCCGTAACCCTGCCCTTGACGACGCTTTCCTG
ATCACCCTTGACGGGTTGTCGGTGCCTTCTTTTTTGGTTTGGCTGTTGTT
TTGAACTCCGACGAAAATATGGGAGGCCCACAATATCGAAAAAAAGCTCT
TGAGAACGTAGCCGGAGCGGTAATAATGCTCTTTAAGTGCGTGTATATGC
CTTCGCATTCCAGCTGTGAGCGGGTTGTCGGCTTCATAGACATGATGCCC
CTAGAACCCCCCCCCCCGCCTCCTTATGATTTACCGTTTGGGTGAGATTG
TTTTTTCGCATTTCCCCCCGTTCCCCCGCCTCCGAGTGATGGCGGCGAGA
CACGGGGAGGAGACATGGCGCACAAGCAGGTCCGCATGTGCGGACGAAGA
GAAAAATCGCGCGAGTTTGACGAAAGACGCCTAGACTCCACCGGGATCCC
CATAAGCGGTCCTAGTTACGGAAGCAGCGGCGGCGGCGGCAGTGCCCCCT
CCGCCTCAACTCAAAGTGGAGGCGTTGTCGATGCCTTGTGATGACTCAAG
CGAGGCAAGCAGCAGACGTGTGCGCTCCCCCCTTGTTCCGCGCCGCCCGG
CGACGACAGGCGAGGTTCCAGATGCGTCATCAGGAGCAGTCAAGAACTCC
GGAGACCCGGCTACGCCAACCCATGGATCGACCTCCGGGGGCTCGGGGGG
GAACGCGCCGTCATCGTCGCTAACGCATGGAGATGGGATCGGTGCGCTCG
CTGGTCACGGCTCCAACGGGGCAGACGGCGGTCGAGGCAGCAGCGGCGGG
GGCATGAGAGATTCCGACGGCGGCGGTGGGGAACAGCAGCAGCATCAGCA
TCAGCATCAGCATCAGCATCAATACCTGGAAGCACAGCAGCCCCCATCTC
GGGAACGAGGGCGTTCCCGTGATCGCGACCTGGACTACTACAGCCAGCAG
CACTTCTCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11928:2615..3874+

>mRNA_H-canaliculatus_F_contig11928.1689.1 ID=mRNA_H-canaliculatus_F_contig11928.1689.1|Name=mRNA_H-canaliculatus_F_contig11928.1689.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11928:2615..3874+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCTAGCACCAGCGGTCGGGCCCCGAGCGAGGAAGATGGCTAGCACCA
GCGGTCGGGCCCCGAGCGAGGAAGGCGAGGTTCCAGATGCGTCATCAGGA
GCAGTCAAGAACTCCGGAGACCCGGCTACGCCAACCCATGGATCGACCTC
CGGGGGCTCGGGGGGGAACGCGCCGTCATCGTCGCTAACGCATGGAGATG
GGATCGGTGCGCTCGCTGGTCACGGCTCCAACGGGGCAGACGGCGGTCGA
GGCAGCAGCGGCGGGGGCATGAGAGATTCCGACGGCGGCGGTGGGGAACA
GCAGCAGCGAGGTTCCAGATGCGTCATCAGGAGCAGTCAAGAACTCCGGA
GACCCGGCTACGCCAACCCATGGATCGACCTCCGGGGGCTCGGGGGGGAA
CGCGCCGTCATCGTCGCTAACGCATGGAGATGGGATCGGTGCGCTCGCTG
GTCACGGCTCCAACGGGGCAGACGGCGGTCGAGGCAGCAGCGGCGGGGGC
ATGAGAGATTCCGACGGCGGCGGTGGGGAACAGCAGCACATCAGCATCAG
CATCAATACCTGGAAGCACAGCAGCCCCCATCTCGGGAACGAGGGCGTTC
CCGTGATCGCGACCTGGACTACTACAGCCAGCAGCACTTCTCGCCATCAG
CATCAGCATCAATACCTGGAAGCACAGCAGCCCCCATCTCGGGAACGAGG
GCGTTCCCGTGATCGCGACCTGGACTACTACAGCCAGCAGCACTTCTCGC
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