mRNA_H-canaliculatus_F_contig11927.1688.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11927.1688.1
Unique NamemRNA_H-canaliculatus_F_contig11927.1688.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11927.1688.1 vs. uniprot
Match: A0A6H5KHT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT2_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 6.430e-20
Identity = 112/209 (53.59%), Postives = 123/209 (58.85%), Query Frame = 2 
Query:    2 PMPGMF-PPAPQQMNPSTGLPLGMTQNGPPLMLPPGXXXXGGGPVINPPGPXXXXXXXSMMGGRXXXXXXXXXXXXXXXXXXXXXGG---LPQSRSFGSRFGRKPGGRG-QQGFRRSNSFGDQFMGPGGAVFGGGRAFDDMMQPGPLSPMMEDDGFDTQSTRSAPAFGATAVVGAAAREAEAAMAASTRVAAGINVEPMKGSGTEETKS 613
            PMP  F PP    +NPSTGLP+GMTQNGPP++LP G    GGGPV      XXXXXXX      XXX       XXXXXXXXXXX     L  SRSF SRFG K G  G QQGFRR++SFGD +MGP G     G+         PLSP ME D F+TQSTRSAP FGATA VG A   AE           G +V     +GTEETKS
Sbjct:  612 PMPPHFDPPQGPPVNPSTGLPIGMTQNGPPIVLPAGMVPRGGGPVXXXXXXXXXXXXXXXXXXXXXXPWGSTPQXXXXXXXXXXXXXXXXLSTSRSFTSRFGMKQGAAGRQQGFRRASSFGD-WMGPSGV----GQ---------PLSPTMEMDSFETQSTRSAPPFGATAAVGDATAAAE-----------GGHV-----TGTEETKS 790
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11927.1688.1 vs. uniprot
Match: D7FWV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV3_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.770e-18
Identity = 105/193 (54.40%), Postives = 116/193 (60.10%), Query Frame = 2 
Query:   38 MNPSTGLPLGMTQNGPPLMLPPGXXXXGGGPVINPPGPXXXXXXXSMMGGRXXXXXXXXXXXXXXXXXXXXXGGLPQSRSFGSRFGRKPGGRG-QQGFRRSNSFGDQFMGPGGAVFGGGRAFDDMMQPGPLSPMMEDDGFDTQSTRSAPAFGATAVVGAAAREAEAAMAASTRVAAGINVEPMKGSGTEETKS 613
            +NPSTGLP+GM QNGPP++LP G    GGG        XXXXXXX    G        XXXXXXXXXXXXXX  L  SRSF SRFG K G  G QQGFRRS+SFGD ++GP G     G+         PLSP ME D F+TQSTRSAP FGATA VG A   AE          AG +V     +GTEETKS
Sbjct:  573 VNPSTGLPVGMRQNGPPIVLPAGMVPRGGGXXXXX-XXXXXXXXXXXXXGPWGSTPQQXXXXXXXXXXXXXXXXLGTSRSFTSRFGMKQGAAGRQQGFRRSSSFGD-WLGPSGV----GQ---------PLSPTMEVDSFETQSTRSAPPFGATATVGDATAAAEXXXXXXXXXXAGGHV-----TGTEETKS 745
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11927.1688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHT2_9PHAE6.430e-2053.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWV3_ECTSI1.770e-1854.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11927contigH-canaliculatus_F_contig11927:1640..2733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size670
Cds size666
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11927.1688.1prot_H-canaliculatus_F_contig11927.1688.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11927 1644..2733 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928896.0103033-UTR-H-canaliculatus_F_contig11927:1639..16431622928896.0103033-UTR-H-canaliculatus_F_contig11927:1639..1643Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11927 1640..1643 +
1696845604.884818-UTR-H-canaliculatus_F_contig11927:1639..16431696845604.884818-UTR-H-canaliculatus_F_contig11927:1639..1643Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11927 1640..1643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928896.0279987-CDS-H-canaliculatus_F_contig11927:1643..21691622928896.0279987-CDS-H-canaliculatus_F_contig11927:1643..2169Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11927 1644..2169 +
1696845604.895885-CDS-H-canaliculatus_F_contig11927:1643..21691696845604.895885-CDS-H-canaliculatus_F_contig11927:1643..2169Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11927 1644..2169 +
1622928896.0401433-CDS-H-canaliculatus_F_contig11927:2593..27331622928896.0401433-CDS-H-canaliculatus_F_contig11927:2593..2733Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11927 2594..2733 +
1696845604.9132586-CDS-H-canaliculatus_F_contig11927:2593..27331696845604.9132586-CDS-H-canaliculatus_F_contig11927:2593..2733Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11927 2594..2733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11927.1688.1

>prot_H-canaliculatus_F_contig11927.1688.1 ID=prot_H-canaliculatus_F_contig11927.1688.1|Name=mRNA_H-canaliculatus_F_contig11927.1688.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=222bp
MPGMFPPAPQQMNPSTGLPLGMTQNGPPLMLPPGMVPPGGGPVINPPGPP
SMMDPSSMMGGRGPGPGSWGGPPPQAGNWGPGAGGLPQSRSFGSRFGRKP
GGRGQQGFRRSNSFGDQFMGPGGAVFGGGRAFDDMMQPGPLSPMMEDDGF
DTQSTRSAPAFGATAVVGAAAREAEAAMAASTRVAAGINVEPMKGSGTEE
TKSSSPKKKGGGGGKGGMNGGG
back to top

mRNA from alignment at H-canaliculatus_F_contig11927:1640..2733+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11927.1688.1 ID=mRNA_H-canaliculatus_F_contig11927.1688.1|Name=mRNA_H-canaliculatus_F_contig11927.1688.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1094bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11927:1640..2733+ (Hapterophycus canaliculatus Oshoro5f female)
CCCGATGCCGGGAATGTTCCCTCCTGCCCCGCAGCAGATGAACCCTTCGA
CCGGGCTCCCACTGGGTATGACGCAGAACGGCCCTCCTCTCATGTTGCCC
CCGGGCATGGTGCCGCCAGGTGGCGGGCCGGTGATCAACCCGCCTGGCCC
TCCGTCCATGATGGATCCGTCCTCGATGATGGGGGGTCGCGGGCCCGGCC
CAGGCAGTTGGGGAGGGCCACCTCCACAGGCTGGTAACTGGGGACCCGGC
GCCGGCGGGCTGCCCCAGAGCCGGTCATTCGGTTCGAGGTTCGGTCGGAA
GCCGGGCGGCCGCGGGCAGCAAGGTTTCCGCCGGTCCAATAGCTTCGGCG
ACCAGTTCATGGGCCCAGGGGGCGCCGTGTTCGGAGGCGGAAGGGCGTTC
GACGACATGATGCAGCCCGGCCCGCTGTCCCCCATGATGGAGGACGACGG
CTTCGACACGCAGTCCACGAGGAGCGCGCCGGCGTTCGGAGCGACAGCGG
TGGTGGGCGCGGCGGCGAGAGAGGCGGAAGGTGAGGCAACGCGCGCGCAC
GAGCACACACCGCGGGGAGGCGGCGTGCCGAGGCCTGTTTTCGAGCACGT
GGTCTGGCCCTGTTGACACGTCTCTGTGTATGTACCGTGGCTGCGGTTAG
TAGGAGTCCGGTGTCGACGGTTGGGCTTCGTCGTCCTGTGGTTCGATGTT
TCGTACTAGCGGTGCTGAAACCAGAGAACGTGCCGTCAGGTTCCTGATGG
TGATTGACGCACTCAGCTTGTACACCTTGAACCTCACCAGTCACCCGCCT
CCCCCGTTACCCCTTCCCGCGCTCGCGGCTGGCTGGCTGCCGCGGCGCTC
GTCGTTTGCCTCCCCACGTCCGCCGCGACGCCTCCGCTCTCTCTCTCCCC
CCCTCCCTTTTCAACCCGGCGATCTTCATCCGCACCGCCCCGCCGCACCC
GCAGCTGCGATGGCCGCCTCCACGAGAGTAGCCGCGGGCATCAACGTCGA
GCCCATGAAAGGATCTGGCACCGAAGAAACAAAGTCGTCGTCGCCGAAGA
AGAAGGGCGGAGGAGGAGGCAAGGGAGGGATGAACGGCGGCGGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11927:1640..2733+

>mRNA_H-canaliculatus_F_contig11927.1688.1 ID=mRNA_H-canaliculatus_F_contig11927.1688.1|Name=mRNA_H-canaliculatus_F_contig11927.1688.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1332bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11927:1640..2733+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCGGGAATGTTCCCTCCTGCCCCGCAGCAGATGAACCCTTCGACCGG
GCTCCCACTGGGTATGACGCAGAACGGCCCTCCTCTCATGTTGCCCCCGG
GCATGGTGCCGCCAGGTGGCGGGCCGGTGATCAACCCGCCTGGCCCTCCG
TCCATGATGGATCCGTCCTCGATGATGGGGGGTCGCGGGCCCGGCCCAGG
CAGTTGGGGAGGGCCACCTCCACAGGCTGGTAACTGGGGACCCGGCGCCG
GCGGGCTGCCCCAGAGCCGGTCATTCGGTTCGAGGTTCGGTCGGAAGCCG
GGCGGCCGCGGGCAGCAAGGTTTCCGCCGGTCCAATAGCTTCGGCGACCA
GTTCATGGGCCCAGGGGGCGCCGTGTTCGGAGGCGGAAGGGCGTTCGACG
ACATGATGCAGCCCGGCCCGCTGTCCCCCATGATGGAGGACGACGGCTTC
GACACGCAGTCCACGAGGAGCGCGCCGGCGTTCGGAGCGACAGCGGTGGT
GGGCGCGGCGGCGAGAGAGGCGGAAGATGCCGGGAATGTTCCCTCCTGCC
CCGCAGCAGATGAACCCTTCGACCGGGCTCCCACTGGGTATGACGCAGAA
CGGCCCTCCTCTCATGTTGCCCCCGGGCATGGTGCCGCCAGGTGGCGGGC
CGGTGATCAACCCGCCTGGCCCTCCGTCCATGATGGATCCGTCCTCGATG
ATGGGGGGTCGCGGGCCCGGCCCAGGCAGTTGGGGAGGGCCACCTCCACA
GGCTGGTAACTGGGGACCCGGCGCCGGCGGGCTGCCCCAGAGCCGGTCAT
TCGGTTCGAGGTTCGGTCGGAAGCCGGGCGGCCGCGGGCAGCAAGGTTTC
CGCCGGTCCAATAGCTTCGGCGACCAGTTCATGGGCCCAGGGGGCGCCGT
GTTCGGAGGCGGAAGGGCGTTCGACGACATGATGCAGCCCGGCCCGCTGT
CCCCCATGATGGAGGACGACGGCTTCGACACGCAGTCCACGAGGAGCGCG
CCGGCGTTCGGAGCGACAGCGGTGGTGGGCGCGGCGGCGAGAGAGGCGGA
AGCTGCGATGGCCGCCTCCACGAGAGTAGCCGCGGGCATCAACGTCGAGC
CCATGAAAGGATCTGGCACCGAAGAAACAAAGTCGTCGTCGCCGAAGAAG
AAGGGCGGAGGAGGAGGCAAGGGAGGGATGAACGGCGGCGGCCTGCGATG
GCCGCCTCCACGAGAGTAGCCGCGGGCATCAACGTCGAGCCCATGAAAGG
ATCTGGCACCGAAGAAACAAAGTCGTCGTCGCCGAAGAAGAAGGGCGGAG
GAGGAGGCAAGGGAGGGATGAACGGCGGCGGC
back to top