mRNA_H-canaliculatus_F_contig11922.1685.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11922.1685.1
Unique NamemRNA_H-canaliculatus_F_contig11922.1685.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11922.1685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11922contigH-canaliculatus_F_contig11922:3182..3858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size677
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11922.1685.1prot_H-canaliculatus_F_contig11922.1685.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11922 3213..3722 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928895.5241828-UTR-H-canaliculatus_F_contig11922:3181..32121622928895.5241828-UTR-H-canaliculatus_F_contig11922:3181..3212Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11922 3182..3212 +
1696845604.6598003-UTR-H-canaliculatus_F_contig11922:3181..32121696845604.6598003-UTR-H-canaliculatus_F_contig11922:3181..3212Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11922 3182..3212 +
1622928895.5499697-UTR-H-canaliculatus_F_contig11922:3722..38581622928895.5499697-UTR-H-canaliculatus_F_contig11922:3722..3858Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11922 3723..3858 +
1696845604.680902-UTR-H-canaliculatus_F_contig11922:3722..38581696845604.680902-UTR-H-canaliculatus_F_contig11922:3722..3858Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11922 3723..3858 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928895.5397584-CDS-H-canaliculatus_F_contig11922:3212..37221622928895.5397584-CDS-H-canaliculatus_F_contig11922:3212..3722Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11922 3213..3722 +
1696845604.6705256-CDS-H-canaliculatus_F_contig11922:3212..37221696845604.6705256-CDS-H-canaliculatus_F_contig11922:3212..3722Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11922 3213..3722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11922.1685.1

>prot_H-canaliculatus_F_contig11922.1685.1 ID=prot_H-canaliculatus_F_contig11922.1685.1|Name=mRNA_H-canaliculatus_F_contig11922.1685.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=170bp
MATRTKDILFVQAACWLATSDCRVSGCLVGCCGSEEHRWQRHSSVPARAF
AMRFGVHSDSRMAPHPECYRVVLPSVSLGRRRFFVLPRIPASSLLRLTHK
GNTVCCPLRPAVCSSAVAALMTKSLPPSLWYTLELGTFKPLPKVTSVLGH
AASLSGLSELRLAFTRSAI*
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mRNA from alignment at H-canaliculatus_F_contig11922:3182..3858+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11922.1685.1 ID=mRNA_H-canaliculatus_F_contig11922.1685.1|Name=mRNA_H-canaliculatus_F_contig11922.1685.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=677bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11922:3182..3858+ (Hapterophycus canaliculatus Oshoro5f female)
GGTGTCTGGTGGGGGGGGGCACGAGGGATACATGGCAACAAGAACTAAAG
ATATTTTGTTCGTTCAAGCGGCGTGTTGGCTAGCTACAAGTGATTGTCGG
GTCTCGGGTTGTTTGGTTGGTTGCTGCGGCAGCGAAGAGCATCGTTGGCA
GAGGCATTCGAGTGTGCCCGCGCGCGCCTTTGCTATGCGCTTTGGCGTTC
ATTCTGACTCTCGCATGGCGCCTCACCCGGAGTGCTATCGTGTTGTTTTG
CCGTCTGTTTCTCTCGGTCGTCGGCGCTTCTTTGTCCTCCCGCGCATCCC
TGCGTCCAGTTTACTGCGCCTCACGCATAAAGGTAATACTGTCTGTTGTC
CACTTCGTCCCGCTGTGTGCTCGAGCGCTGTTGCTGCGCTCATGACCAAG
AGTCTTCCCCCCTCTCTTTGGTATACGCTTGAGTTAGGAACGTTCAAACC
CTTGCCCAAAGTGACTTCAGTCCTGGGCCATGCGGCAAGCTTGTCAGGTT
TGAGCGAGCTCCGCCTAGCTTTTACTCGCTCTGCGATTTAAGCTTAGAGC
GTCCACACCAGAGCGCAGATGCGTGTCTACAAACTCTGCCACACCCTTCA
CAGGCCCCATTTTGGTCACCATTCTGCTAATAAATCCATGCACTTTCGCC
CAGGCGTAATGCAAGACTTCCCTCCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11922:3182..3858+

>mRNA_H-canaliculatus_F_contig11922.1685.1 ID=mRNA_H-canaliculatus_F_contig11922.1685.1|Name=mRNA_H-canaliculatus_F_contig11922.1685.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1020bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11922:3182..3858+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCAACAAGAACTAAAGATATTTTGTTCGTTCAAGCGGCGTGTTGGCT
AGCTACAAGTGATTGTCGGGTCTCGGGTTGTTTGGTTGGTTGCTGCGGCA
GCGAAGAGCATCGTTGGCAGAGGCATTCGAGTGTGCCCGCGCGCGCCTTT
GCTATGCGCTTTGGCGTTCATTCTGACTCTCGCATGGCGCCTCACCCGGA
GTGCTATCGTGTTGTTTTGCCGTCTGTTTCTCTCGGTCGTCGGCGCTTCT
TTGTCCTCCCGCGCATCCCTGCGTCCAGTTTACTGCGCCTCACGCATAAA
GGTAATACTGTCTGTTGTCCACTTCGTCCCGCTGTGTGCTCGAGCGCTGT
TGCTGCGCTCATGACCAAGAGTCTTCCCCCCTCTCTTTGGTATACGCTTG
AGTTAGGAACGTTCAAACCCTTGCCCAAAGTGACTTCAGTCCTGGGCCAT
GCGGCAAGCTTGTCAGGTTTGAGCGAGCTCCGCCTAGCTTTTACTCGCTC
TGCGATTTAAATGGCAACAAGAACTAAAGATATTTTGTTCGTTCAAGCGG
CGTGTTGGCTAGCTACAAGTGATTGTCGGGTCTCGGGTTGTTTGGTTGGT
TGCTGCGGCAGCGAAGAGCATCGTTGGCAGAGGCATTCGAGTGTGCCCGC
GCGCGCCTTTGCTATGCGCTTTGGCGTTCATTCTGACTCTCGCATGGCGC
CTCACCCGGAGTGCTATCGTGTTGTTTTGCCGTCTGTTTCTCTCGGTCGT
CGGCGCTTCTTTGTCCTCCCGCGCATCCCTGCGTCCAGTTTACTGCGCCT
CACGCATAAAGGTAATACTGTCTGTTGTCCACTTCGTCCCGCTGTGTGCT
CGAGCGCTGTTGCTGCGCTCATGACCAAGAGTCTTCCCCCCTCTCTTTGG
TATACGCTTGAGTTAGGAACGTTCAAACCCTTGCCCAAAGTGACTTCAGT
CCTGGGCCATGCGGCAAGCTTGTCAGGTTTGAGCGAGCTCCGCCTAGCTT
TTACTCGCTCTGCGATTTAA
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