mRNA_H-canaliculatus_F_contig11917.1679.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11917.1679.1
Unique NamemRNA_H-canaliculatus_F_contig11917.1679.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11917.1679.1 vs. uniprot
Match: A0A6H5KWR0_9PHAE (SpoU_methylase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWR0_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 9.960e-22
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:   13 QGSGMSAQQKACCDSFVYISQHGAGTASLNVTVAASIILHRYAGWRSD 156
            +GSGMS QQKACCDSFVYISQHG GTASLNV VAASI+LHRYAGWRS+
Sbjct:  109 EGSGMSEQQKACCDSFVYISQHGGGTASLNVAVAASIVLHRYAGWRSN 156
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11917.1679.1 vs. uniprot
Match: A0A1V9YZQ8_9STRA (SpoU_methylase domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YZQ8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.300e-14
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   13 QGSGMSAQQKACCDSFVYISQHGAGTASLNVTVAASIILHRYAGWRSDN 159
            +GSG+S  Q A CD FVYI Q+G GTASLNVTVAASII+HRYA W + N
Sbjct:  126 EGSGLSDAQVAICDGFVYIPQYGGGTASLNVTVAASIIMHRYAVWAATN 174
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11917.1679.1 vs. uniprot
Match: A0A4D9DD77_9STRA (SpoU_methylase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD77_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 7.670e-14
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 LLLPQGSGMSAQQKACCDSFVYISQHGAGTASLNVTVAASIILHRYAGWRSDN 159
            LL  +G+GMSA+Q   CD FVYISQ+G GTASLNV VA SI++HR++ W +D+
Sbjct:   74 LLGNEGTGMSARQARVCDGFVYISQYGQGTASLNVAVAGSIVMHRFSEWAADS 126
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11917.1679.1 vs. uniprot
Match: T0RYW0_SAPDV (SpoU_methylase domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RYW0_SAPDV)

HSP 1 Score: 69.3 bits (168), Expect = 3.230e-13
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   13 QGSGMSAQQKACCDSFVYISQHGAGTASLNVTVAASIILHRYAGW 147
            +GSG+S  Q A CD FVYI Q+G GTASLNVTVAASII+H+YA W
Sbjct:  137 EGSGLSDAQVAICDGFVYIPQYGGGTASLNVTVAASIIMHKYAAW 181
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11917.1679.1 vs. uniprot
Match: W7UCB5_9STRA (Obp33pep like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UCB5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.260e-13
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 LLLPQGSGMSAQQKACCDSFVYISQHGAGTASLNVTVAASIILHRYAGWRSDN 159
            LL  +G+GMSA+Q   CD FVYISQ+G GTASLNV VA SI++HR++ W +D+
Sbjct:  156 LLGNEGTGMSARQARVCDGFVYISQYGQGTASLNVAVAGSIVMHRFSEWAADS 208
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11917.1679.1 vs. uniprot
Match: A0A835YUT9_9STRA (Alpha/beta knot methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.510e-13
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:   13 QGSGMSAQQKACCDSFVYISQHGAGTASLNVTVAASIILHRYAGWR 150
            +GSGMSA+QK  CDSFV I Q+G GTASLNVTVAA+I++HR++ W+
Sbjct:  135 EGSGMSAKQKRACDSFVVIPQYGGGTASLNVTVAANIVMHRFSVWQ 180
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11917.1679.1 vs. uniprot
Match: A0A067BHI6_SAPPC (SpoU_methylase domain-containing protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BHI6_SAPPC)

HSP 1 Score: 68.2 bits (165), Expect = 6.590e-13
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   13 QGSGMSAQQKACCDSFVYISQHGAGTASLNVTVAASIILHRYAGW 147
            +GSG+S  Q A CD FVYI Q+G GTASLNVTVAASII+H+YA W
Sbjct:  119 EGSGLSDAQVAICDGFVYIPQYGGGTASLNVTVAASIIMHKYAVW 163
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11917.1679.1 vs. uniprot
Match: A0A1V9ZAX3_9STRA (SpoU_methylase domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZAX3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 7.520e-13
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   13 QGSGMSAQQKACCDSFVYISQHGAGTASLNVTVAASIILHRYAGW 147
            +GSG+S  Q A CD ++YI Q+G GTASLNVTVAASII+HRYA W
Sbjct:  125 EGSGLSDAQLAICDGYIYIPQYGGGTASLNVTVAASIIMHRYATW 169
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11917.1679.1 vs. uniprot
Match: A0A8J4FB88_9CHLO (SpoU_methylase domain-containing protein (Fragment) n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FB88_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 9.270e-13
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 LLLPQGSGMSAQQKACCDSFVYISQHGAGTASLNVTVAASIILHRYAGW 147
            LL  +G G+S +Q A CD FVYI QHGAGTASLNV VAASI+LH +A W
Sbjct:  118 LLGNEGQGLSERQMALCDGFVYIPQHGAGTASLNVAVAASIVLHHFAVW 166
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11917.1679.1 vs. uniprot
Match: A0A7S1C439_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C439_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.320e-12
Identity = 30/45 (66.67%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:   13 QGSGMSAQQKACCDSFVYISQHGAGTASLNVTVAASIILHRYAGW 147
            +G+G+SA+QK+ CD+FVYI+Q+G GTASLNVTVAASI+LH +  W
Sbjct:  155 EGTGLSARQKSVCDAFVYIAQYGGGTASLNVTVAASIVLHHFGLW 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11917.1679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWR0_9PHAE9.960e-2287.50SpoU_methylase domain-containing protein n=1 Tax=E... [more]
A0A1V9YZQ8_9STRA3.300e-1469.39SpoU_methylase domain-containing protein n=1 Tax=A... [more]
A0A4D9DD77_9STRA7.670e-1460.38SpoU_methylase domain-containing protein n=1 Tax=N... [more]
T0RYW0_SAPDV3.230e-1371.11SpoU_methylase domain-containing protein n=1 Tax=S... [more]
W7UCB5_9STRA3.260e-1360.38Obp33pep like protein n=1 Tax=Nannochloropsis gadi... [more]
A0A835YUT9_9STRA4.510e-1367.39Alpha/beta knot methyltransferase n=1 Tax=Tribonem... [more]
A0A067BHI6_SAPPC6.590e-1371.11SpoU_methylase domain-containing protein n=2 Tax=S... [more]
A0A1V9ZAX3_9STRA7.520e-1368.89SpoU_methylase domain-containing protein n=1 Tax=T... [more]
A0A8J4FB88_9CHLO9.270e-1367.35SpoU_methylase domain-containing protein (Fragment... [more]
A0A7S1C439_9STRA1.320e-1266.67Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11917contigH-canaliculatus_F_contig11917:196..357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue6.4e-08
Seed eggNOG ortholog112098.XP_008608741.1
EggNOG free text desc.rRNA methyltransferase
EggNOG OGsCOG0566@1,KOG0838@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size138
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928894.9325316-UTR-H-canaliculatus_F_contig11917:195..2191622928894.9325316-UTR-H-canaliculatus_F_contig11917:195..219Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11917 196..219 +
1696845604.389353-UTR-H-canaliculatus_F_contig11917:195..2191696845604.389353-UTR-H-canaliculatus_F_contig11917:195..219Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11917 196..219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928894.9716763-CDS-H-canaliculatus_F_contig11917:219..3571622928894.9716763-CDS-H-canaliculatus_F_contig11917:219..357Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11917 220..357 +
1696845604.3998718-CDS-H-canaliculatus_F_contig11917:219..3571696845604.3998718-CDS-H-canaliculatus_F_contig11917:219..357Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11917 220..357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11917.1679.1prot_H-canaliculatus_F_contig11917.1679.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11917 220..357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11917.1679.1

>prot_H-canaliculatus_F_contig11917.1679.1 ID=prot_H-canaliculatus_F_contig11917.1679.1|Name=mRNA_H-canaliculatus_F_contig11917.1679.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=46bp
MSAQQKACCDSFVYISQHGAGTASLNVTVAASIILHRYAGWRSDN*
back to top

mRNA from alignment at H-canaliculatus_F_contig11917:196..357+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11917.1679.1 ID=mRNA_H-canaliculatus_F_contig11917.1679.1|Name=mRNA_H-canaliculatus_F_contig11917.1679.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=162bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11917:196..357+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCTCCTTCCTCAGGGATCGGGCATGAGCGCGCAGCAAAAAGCGTGCTG
CGATTCGTTCGTGTACATATCGCAGCACGGCGCGGGGACGGCGTCCTTGA
ACGTAACCGTCGCGGCCTCCATCATCTTGCACCGGTACGCCGGCTGGAGG
TCCGATAACTAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11917:196..357+

>mRNA_H-canaliculatus_F_contig11917.1679.1 ID=mRNA_H-canaliculatus_F_contig11917.1679.1|Name=mRNA_H-canaliculatus_F_contig11917.1679.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=276bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11917:196..357+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCGCGCAGCAAAAAGCGTGCTGCGATTCGTTCGTGTACATATCGCA
GCACGGCGCGGGGACGGCGTCCTTGAACGTAACCGTCGCGGCCTCCATCA
TCTTGCACCGGTACGCCGGCTGGAGGTCCGATAACTAGATGAGCGCGCAG
CAAAAAGCGTGCTGCGATTCGTTCGTGTACATATCGCAGCACGGCGCGGG
GACGGCGTCCTTGAACGTAACCGTCGCGGCCTCCATCATCTTGCACCGGT
ACGCCGGCTGGAGGTCCGATAACTAG
back to top