mRNA_H-canaliculatus_F_contig10147.166.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10147.166.1
Unique NamemRNA_H-canaliculatus_F_contig10147.166.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10147.166.1 vs. uniprot
Match: A0A6H5LF20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LF20_9PHAE)

HSP 1 Score: 342 bits (876), Expect = 1.550e-111
Identity = 180/338 (53.25%), Postives = 227/338 (67.16%), Query Frame = 1 
Query:    7 QVLKALSDDVI*SAVGYDKGKAVRKVLTAGPLCRQVLQEVVKIF-RLEMEPAWTEEGSTV-RQARRPHGNQEWNAGLSPHTLDTLSSPQAWQQAVSRTLPSVEQLEGCYEVSLGCGRRAGEAACTSRACSFCWRSRGRR--LIRRTVKVLNHWGGAAVEASAGTGSVRGSPVRDAA-DNGWTRSITSRANDVEIYLTAAARRNEKRGYGSTMLGRVAYFCEHQGNDWRRGDKSEAAPEGAYTVRVAVSEYVTAATRNRRKVDPVSGLDEFRMRARLMFYPASAIRCIENIMHACPVAGHSACGLHGEAGSRRVWRCTLRSTSTYLLNKYFHRVGRDSI 1005
            Q LK+LSD V   A G++ GK +RK +TAGPLCR+VLQ+V      +++ PA  E+G+T  RQ  RPHG Q+W A L    +D     Q WQ+ V + LPS ++L+  Y    GCGR  GEA C +R CS+CWR+R  +  L+  +V+V NHWGGA  EA+AGTG+VRG PV+DA   +GWTRS  SR +DVEIYLTA  +R  + G   T LG+VA+F EHQGN WRR D+S   PEG YT+ +AVSEYVTA   N  ++   +GL EF+MR  L FYP  AIR + ++MHACP +G SACGL  E  S+R WRC L  TSTYLLNKYFH  GRDSI
Sbjct:   92 QALKSLSDSVTWDACGFENGKEMRKEVTAGPLCREVLQDVFAFLPAMQLSPASVEDGTTTGRQGGRPHGYQQWTADLKG--VDAGIELQTWQEEVFKMLPSPQELDQHYADYFGCGRIDGEAPCNTRTCSYCWRNRTYKDGLVHDSVEVFNHWGGAPGEANAGTGTVRGCPVKDAGRHSGWTRSTASRGSDVEIYLTANDQREGRYGLEQTTLGKVAFFFEHQGNPWRRDDESNVLPEGEYTIWMAVSEYVTAGVGNNLQLHHTTGLAEFKMRHTLTFYPTPAIRRVVHMMHACPTSGESACGLVRE--SKRQWRCNLLGTSTYLLNKYFHSPGRDSI 425
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BLAST of mRNA_H-canaliculatus_F_contig10147.166.1 vs. uniprot
Match: A0A6H5JYK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYK1_9PHAE)

HSP 1 Score: 272 bits (696), Expect = 4.230e-86
Identity = 138/234 (58.97%), Postives = 163/234 (69.66%), Query Frame = 1 
Query:    7 QVLKALSDDVI*SAVGYDKGKAVRKVLTAGPLCRQVLQEVVKIFRLEMEPAWTEEGSTVRQARRPHGNQEWNAGLSPHTLDTLSSPQAWQQAVSRTLPSVEQLEGCYEVSLGCGRRAGEAACTSRACSFCWRSRGRRLIRRTVKVLNHWGGAAVEASAGTGSVRGSPVRDAADNGWTRSITSRANDVEIYLTAAARRNEKRGYGSTMLGRVAYFCEHQGNDWRRGDKSE-AAPE 705
            Q LKAL D V  SA G   G  V K LTAGPLCR+VLQEV KI  L+  PA +E+ +T R+  RPHG Q+W+AGL P  ++T     AWQQA+S+TLPS EQL+ CY+ SLGCGR A EA C+ R CSFCWR+RG+ ++R+TV V NHWG A  E SAG G++RG PV+DA    W RS  SR NDVEIYL A  +R   RG G T LG+VAYF EHQGNDWRRGD S  A PE
Sbjct:   70 QALKALCDGVRWSAKGRVGGVEVTKELTAGPLCREVLQEVFKILPLQTTPAASEDDTTGRRGGRPHGYQQWDAGLVPTRVETGLDAPAWQQAISKTLPSAEQLQKCYDDSLGCGRTAQEAPCSRRTCSFCWRNRGQGIVRQTVVVFNHWGQAPAEVSAGIGTIRGGPVKDAGTPTWVRSAASRGNDVEIYLKAEDQRAGNRGLGRTTLGKVAYFFEHQGNDWRRGDSSSNAIPE 303
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BLAST of mRNA_H-canaliculatus_F_contig10147.166.1 vs. uniprot
Match: A0A6H5K975_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K975_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 1.800e-58
Identity = 122/296 (41.22%), Postives = 160/296 (54.05%), Query Frame = 1 
Query:   91 AGPLCRQVLQEVVKIFRLEMEPAWTEEGSTVRQARRPHGNQEWNAGLSPHTLDTLSSPQAWQQAVSRTLPSVEQLEGCYEVSLGCGRRAGEAACTSRACSFCWRSRGRRLIRRTVKVLNHWGGAAVEASAGTGSVRGSPVRDAAD--NGWTRSITSRANDVEIYLTAAARRNEKRGYGSTMLGRVAYFCEHQGNDWRRGDKSEAAPEGAYTVRVAVSEYVTAATRNRRKVDPVSGLDEFRMRARLMFYPASAIRCIENIMHACPVAGHSACGLHGEAGSRRVWRCTLRSTSTYLLN 972
            +G LCRQ L+EV  +  L + PA ++          P   + W+                WQ  V  TLP+  QLE  Y+V LGCGR      C    C+FCWR     L   +V   NHWG A  EASAGTG++RG PV+DAA+  N W    TSRANDVE+Y+  +ARR+ +R   +T LGR+A F EHQGND R     +    G +T+ VAV EYVT      RKV+  +G D F +R  + F+ AS IR + ++MHAC   G S+C L    G +  WRCT   ++ YLLN
Sbjct:  287 SGDLCRQTLREVFSV--LPLAPALSD---------TPSAGRPWDRA-------------DWQSVVRGTLPTALQLEALYKVKLGCGREESGPLCNDDVCAFCWRGNS-GLHNGSVTCFNHWGNAPEEASAGTGTLRGGPVKDAAEFGNKWMIQETSRANDVELYVDTSARRSGERRQAATTLGRIACFFEHQGNDSRHLVDGKVQEGGEWTIWVAVKEYVTVGMGQGRKVNYPTGCDVFYLRRSVQFFHASGIRSMVHMMHACATTGASSCCLLRGEGKKDEWRCTPTQSAHYLLN 557
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BLAST of mRNA_H-canaliculatus_F_contig10147.166.1 vs. uniprot
Match: A0A6H5JWC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC7_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.490e-28
Identity = 97/284 (34.15%), Postives = 134/284 (47.18%), Query Frame = 1 
Query:   13 LKALSDDVI*SAVGYDKGKAVRKVLTAGPLCRQVLQEVVKIFRLEMEPAWTEEGSTVRQARRPHGNQEWNAGLSPHTLDTLSSPQAWQQAVSRTLPSVEQLEGCYEVSLGCGRRAGEAACTSRACSFCWRSRGR--RLIRRTVKVLNHWGGAAVEASAGTGSVRGSPVRDAAD--NGWTRSITSRANDVEIYLTAAARRNEKRGYGSTMLGRVAYFCEHQGNDWRRGDKSEAAPEGAYTVRVAVSEYVTAATRNRRKVDPVSGLDEFRMRARLMFYPASAIRCI 852
            +K+L+D +  +A G+   K  R+ +TAG LCRQ LQ+V  +  L + PA     S    A R  GN EW+  L    L T +S                                                R     L   +V   NHWG +  EASAGTG++RG PV+DAA+  N W    TSRANDV +Y+   ARR  +R   +T LGR+AY  EHQGND R     +    G +T+ VAV EY+TA     RKV+  +G D F +R++ +   +  +RC+
Sbjct:  204 IKSLADGIEWTASGWTGSKWERRTVTAGDLCRQTLQDVFSV--LPLAPAL----SDTLSAGRSWGNVEWDEDL----LGTEASLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRADCPGLHNGSVTCFNHWGNSPEEASAGTGTLRGGPVKDAAEFGNKWMIQETSRANDVGLYVDTNARRFGEREQAATTLGRIAYCFEHQGNDSRHLVDGKVQEGGEWTIWVAVEEYITAGRGQGRKVNHPTGCDVFYLRSQDVL-GSPRVRCL 476
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10147.166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5LF20_9PHAE1.550e-11153.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYK1_9PHAE4.230e-8658.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K975_9PHAE1.800e-5841.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWC7_9PHAE1.490e-2834.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10147contigH-canaliculatus_F_contig10147:2306..3892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-04_002132.1
Exons2
Model size1165
Cds size867
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10147.166.1prot_H-canaliculatus_F_contig10147.166.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10147 2453..3319 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928643.419918-UTR-H-canaliculatus_F_contig10147:2305..24521622928643.419918-UTR-H-canaliculatus_F_contig10147:2305..2452Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10147 2306..2452 +
1696845509.8918264-UTR-H-canaliculatus_F_contig10147:2305..24521696845509.8918264-UTR-H-canaliculatus_F_contig10147:2305..2452Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10147 2306..2452 +
1622928643.4403553-UTR-H-canaliculatus_F_contig10147:3319..33211622928643.4403553-UTR-H-canaliculatus_F_contig10147:3319..3321Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10147 3320..3321 +
1696845509.9150407-UTR-H-canaliculatus_F_contig10147:3319..33211696845509.9150407-UTR-H-canaliculatus_F_contig10147:3319..3321Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10147 3320..3321 +
1622928643.4580905-UTR-H-canaliculatus_F_contig10147:3743..38921622928643.4580905-UTR-H-canaliculatus_F_contig10147:3743..3892Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10147 3744..3892 +
1696845509.9264598-UTR-H-canaliculatus_F_contig10147:3743..38921696845509.9264598-UTR-H-canaliculatus_F_contig10147:3743..3892Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10147 3744..3892 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928643.4309251-CDS-H-canaliculatus_F_contig10147:2452..33191622928643.4309251-CDS-H-canaliculatus_F_contig10147:2452..3319Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10147 2453..3319 +
1696845509.9015713-CDS-H-canaliculatus_F_contig10147:2452..33191696845509.9015713-CDS-H-canaliculatus_F_contig10147:2452..3319Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10147 2453..3319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10147.166.1

>prot_H-canaliculatus_F_contig10147.166.1 ID=prot_H-canaliculatus_F_contig10147.166.1|Name=mRNA_H-canaliculatus_F_contig10147.166.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=289bp
MEPAWTEEGSTVRQARRPHGNQEWNAGLSPHTLDTLSSPQAWQQAVSRTL
PSVEQLEGCYEVSLGCGRRAGEAACTSRACSFCWRSRGRRLIRRTVKVLN
HWGGAAVEASAGTGSVRGSPVRDAADNGWTRSITSRANDVEIYLTAAARR
NEKRGYGSTMLGRVAYFCEHQGNDWRRGDKSEAAPEGAYTVRVAVSEYVT
AATRNRRKVDPVSGLDEFRMRARLMFYPASAIRCIENIMHACPVAGHSAC
GLHGEAGSRRVWRCTLRSTSTYLLNKYFHRVGRDSIAE*
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mRNA from alignment at H-canaliculatus_F_contig10147:2306..3892+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10147.166.1 ID=mRNA_H-canaliculatus_F_contig10147.166.1|Name=mRNA_H-canaliculatus_F_contig10147.166.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1587bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10147:2306..3892+ (Hapterophycus canaliculatus Oshoro5f female)
ACCGCACAGGTTTTGAAGGCGCTAAGCGATGACGTGATCTAGTCGGCGGT
GGGCTACGACAAGGGGAAAGCGGTCAGAAAGGTGCTAACGGCCGGCCCCC
TCTGCAGGCAAGTCCTACAGGAGGTCGTCAAGATTTTCCGGTTGGAGATG
GAGCCAGCATGGACGGAGGAGGGATCCACAGTTCGCCAAGCAAGACGGCC
GCACGGCAACCAGGAGTGGAACGCTGGCTTATCGCCGCACACCTTGGATA
CTCTCTCAAGCCCCCAAGCATGGCAGCAGGCAGTGTCCAGGACCTTGCCA
TCCGTAGAGCAGCTCGAAGGATGTTATGAAGTGTCGCTCGGCTGCGGAAG
GAGAGCGGGAGAGGCGGCATGCACTAGTCGGGCGTGCTCGTTTTGCTGGC
GGAGTAGGGGACGACGCCTCATCCGTCGAACGGTTAAAGTCTTAAATCAT
TGGGGAGGGGCAGCGGTAGAAGCGAGCGCCGGGACAGGAAGCGTCCGAGG
TAGCCCGGTGAGGGACGCGGCTGATAATGGCTGGACGCGGTCGATAACAT
CTCGGGCCAATGATGTCGAGATATACCTCACGGCCGCGGCACGACGCAAC
GAGAAGCGTGGCTATGGATCTACAATGCTGGGCAGAGTGGCATACTTCTG
TGAGCATCAAGGAAACGACTGGCGTCGTGGAGATAAGAGTGAAGCTGCGC
CGGAAGGGGCTTACACGGTGAGGGTGGCGGTGTCGGAGTACGTCACAGCT
GCAACCAGAAACAGACGGAAGGTCGATCCGGTTTCCGGCCTCGACGAATT
CCGAATGCGGGCGAGGCTAATGTTCTACCCCGCTTCGGCCATCCGGTGTA
TAGAGAACATTATGCATGCCTGTCCGGTCGCTGGGCATTCCGCATGCGGA
TTGCACGGCGAGGCGGGTTCCAGACGGGTGTGGCGGTGCACCCTTCGGAG
CACCTCAACGTACCTCCTGAACAAGTACTTCCATCGCGTCGGGCGCGACT
CCATCGCCGAATGATTGTGAGTGGCCTTCGTGTCCATCTAAGATCGAAGC
CCCACTCGTCCGGATTGTGCTAGAGTCCCGCAGAACGAACGACCTCACTC
TTGCCCTACAATCCGATTTTCAAGGTTCGACCGTCTCCGCCACCAGCATG
TTCGCAACCCCGGGCGATAAACCCGCTGCAGATAGGCTAGGGGGAGAAAT
ATTGATAAGATTTATTTAGAAATCATGCCTCGGGCGCATTGCTTCTCTCT
ACATCCACCGAACATCCGCCCCCCCCTGAACGCCAAGCCTAGATGAGGCG
GCTCGCGAAATAGTTTCAGGAGGTGCTCCTTCGGTGCTATCATGTCTTTC
TGACAAACTAGTGTTGCCCCTTGGTCCTGTGCCGACAACATCCAAATTTC
TCCCTCTCCCCTTTCTGACCCCCCCCATCGCCTCGCAGGCTCCGAATGAC
TCGCAGGATTTGCATGGCGTGCAAGTTTCCGAAGCTGTTCCCCGGAGGAG
AGGCAGGAGTGGCACGCATCTGCTATCGAGGTGTTGTCGGCAGCCCTTGC
CTTTTTGCGATCACCTATCTTTATCGAGAGGGCGTCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10147:2306..3892+

>mRNA_H-canaliculatus_F_contig10147.166.1 ID=mRNA_H-canaliculatus_F_contig10147.166.1|Name=mRNA_H-canaliculatus_F_contig10147.166.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1734bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10147:2306..3892+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGCCAGCATGGACGGAGGAGGGATCCACAGTTCGCCAAGCAAGACG
GCCGCACGGCAACCAGGAGTGGAACGCTGGCTTATCGCCGCACACCTTGG
ATACTCTCTCAAGCCCCCAAGCATGGCAGCAGGCAGTGTCCAGGACCTTG
CCATCCGTAGAGCAGCTCGAAGGATGTTATGAAGTGTCGCTCGGCTGCGG
AAGGAGAGCGGGAGAGGCGGCATGCACTAGTCGGGCGTGCTCGTTTTGCT
GGCGGAGTAGGGGACGACGCCTCATCCGTCGAACGGTTAAAGTCTTAAAT
CATTGGGGAGGGGCAGCGGTAGAAGCGAGCGCCGGGACAGGAAGCGTCCG
AGGTAGCCCGGTGAGGGACGCGGCTGATAATGGCTGGACGCGGTCGATAA
CATCTCGGGCCAATGATGTCGAGATATACCTCACGGCCGCGGCACGACGC
AACGAGAAGCGTGGCTATGGATCTACAATGCTGGGCAGAGTGGCATACTT
CTGTGAGCATCAAGGAAACGACTGGCGTCGTGGAGATAAGAGTGAAGCTG
CGCCGGAAGGGGCTTACACGGTGAGGGTGGCGGTGTCGGAGTACGTCACA
GCTGCAACCAGAAACAGACGGAAGGTCGATCCGGTTTCCGGCCTCGACGA
ATTCCGAATGCGGGCGAGGCTAATGTTCTACCCCGCTTCGGCCATCCGGT
GTATAGAGAACATTATGCATGCCTGTCCGGTCGCTGGGCATTCCGCATGC
GGATTGCACGGCGAGGCGGGTTCCAGACGGGTGTGGCGGTGCACCCTTCG
GAGCACCTCAACGTACCTCCTGAACAAGTACTTCCATCGCGTCGGGCGCG
ACTCCATCGCCGAATGAATGGAGCCAGCATGGACGGAGGAGGGATCCACA
GTTCGCCAAGCAAGACGGCCGCACGGCAACCAGGAGTGGAACGCTGGCTT
ATCGCCGCACACCTTGGATACTCTCTCAAGCCCCCAAGCATGGCAGCAGG
CAGTGTCCAGGACCTTGCCATCCGTAGAGCAGCTCGAAGGATGTTATGAA
GTGTCGCTCGGCTGCGGAAGGAGAGCGGGAGAGGCGGCATGCACTAGTCG
GGCGTGCTCGTTTTGCTGGCGGAGTAGGGGACGACGCCTCATCCGTCGAA
CGGTTAAAGTCTTAAATCATTGGGGAGGGGCAGCGGTAGAAGCGAGCGCC
GGGACAGGAAGCGTCCGAGGTAGCCCGGTGAGGGACGCGGCTGATAATGG
CTGGACGCGGTCGATAACATCTCGGGCCAATGATGTCGAGATATACCTCA
CGGCCGCGGCACGACGCAACGAGAAGCGTGGCTATGGATCTACAATGCTG
GGCAGAGTGGCATACTTCTGTGAGCATCAAGGAAACGACTGGCGTCGTGG
AGATAAGAGTGAAGCTGCGCCGGAAGGGGCTTACACGGTGAGGGTGGCGG
TGTCGGAGTACGTCACAGCTGCAACCAGAAACAGACGGAAGGTCGATCCG
GTTTCCGGCCTCGACGAATTCCGAATGCGGGCGAGGCTAATGTTCTACCC
CGCTTCGGCCATCCGGTGTATAGAGAACATTATGCATGCCTGTCCGGTCG
CTGGGCATTCCGCATGCGGATTGCACGGCGAGGCGGGTTCCAGACGGGTG
TGGCGGTGCACCCTTCGGAGCACCTCAACGTACCTCCTGAACAAGTACTT
CCATCGCGTCGGGCGCGACTCCATCGCCGAATGA
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