mRNA_H-canaliculatus_F_contig10139.164.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10139.164.1
Unique NamemRNA_H-canaliculatus_F_contig10139.164.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Match: A0A6H5L550_9PHAE (Protein transport protein SEC23 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L550_9PHAE)

HSP 1 Score: 406 bits (1043), Expect = 6.990e-133
Identity = 255/423 (60.28%), Postives = 279/423 (65.96%), Query Frame = 1
Query:    4 ESGTNQLEVEEARVAVDTVVQEVSSRFRQLRKGRPGGLGXXXXTSTTAATTXXXXXXXXXXXXXXXIEGNGLPSRPAPTTWTPATPLPAALKER--GYGSTGNGGGGVGDLLGSSLEDAEGGEAGGFDA-ASPPSEGTA-----GREAATAQAPPAGGGAR--GVAGIGLGGTE-------IGRPEDAVFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSMVSLKATEALASLAGDNGGRGG-----------------GVEVSSRTLPFARVPVETLAMLADRILVLDTHERVFVWSGADVCGEEFEPVREACRGLFSGEAGSRFPCATVVFLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLPPTDDESYRDFFWDVCDPSY 1170
            +SGTNQ EVEEARVAVDTVVQEVSSRFR  RK +P    XXXX        XXX                  P+RP  +      PLPAAL+                 D+   SL DAEGGEAG F   ASPP  G++      R A  A    +G G+   G AG              IGRPEDAVFPRELGRLP QLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPS+VSLKA EALA L     G GG                     +  + PF+RVPVETLAMLADR+LVLDTH+RVFVWSG+ VCG EFE VREACR  F+GEAGSRFP A VVFLKDGTSWSRYLTSRLIPSHKDPV++QL+GFP LAGVP AEVE LRAKLPPTDDESYR+FFWDVCDP++
Sbjct:    2 QSGTNQHEVEEARVAVDTVVQEVSSRFRDFRKRQPAXXXXXXXXXXXXXXXXXXP-----------------PTRPERSP-----PLPAALRGSVXXXXXXXXXXXXXXDVGPPSLADAEGGEAGVFSTIASPPLSGSSTDPHSARAAGAAAVDDSGTGSSNGGRAGXXXXXXXXXXXXRGIGRPEDAVFPRELGRLPLQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSLVSLKAAEALACLTAAGNGSGGDSGNTAKERVPTASTSAAAAAAGLSFPFSRVPVETLAMLADRVLVLDTHDRVFVWSGSAVCGPEFEAVREACRSFFAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTDDESYREFFWDVCDPNF 402          
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Match: D8LGM0_ECTSI (Protein transport protein SEC23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM0_ECTSI)

HSP 1 Score: 300 bits (767), Expect = 8.450e-88
Identity = 208/410 (50.73%), Postives = 229/410 (55.85%), Query Frame = 1
Query:    1 TESGTNQLEVEEARVAVDTVVQEVSSRFRQLRKGRPGGLGXXXXTSTTAATTXXXXXXXXXXXXXXXIEGNGLPSRPAPTTWTPATPLPAALKERG-------YGSTGNGGGGVGDLLGSSLEDAEGGEAGGFDAASPPSEGTAGREAATAQAPPAGGGARGVAGIGLGGTEIGRPEDAVFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSMVSLKATEALASLAGDNGGRGG--------GVEVSSRT-----LPFARVPVETLAMLADRILVLDTHERVFVWSGADVCGEEFEPVREACRGLFSGEAGSRFPCATVVFLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLPPTDDESYRDFFWDVCDPSY 1170
            TESGTNQ EVEEARVAVDTVVQE+SSRFR  RK +P    XXXX        XXXXXXXX                P  T    + PLPAAL+ RG                   D+   SL DAEGGEAGGF   + P                                                                                 GALEECLRMMEPS+VS KATEALA L     G GG        GV  +S +      PF+RVPVETLAMLADR+LVLDTH+RVFVWSG+ VCG EFE VREACRG+F+GEAGSRFP A VVFLKDGTSWSRYLTSRLIPSHKDPV++QL+GFP LAGVP AEVE LRAKLPPTDDESYR+FFWDVCDP++
Sbjct:  431 TESGTNQHEVEEARVAVDTVVQEISSRFRDFRKRQPAXXXXXXXXXXXXXXXXXXXXXXX----------------PVSTRPELSPPLPAALRGRGSXXXXXXXXXXXXXXXXXXDVGPPSLADAEGGEAGGFSTIASP---------------------------------------------------------------------------------GALEECLRMMEPSLVSFKATEALACLTAAGNGSGGDSGNTAKEGVPTASASAAAPPFPFSRVPVETLAMLADRVLVLDTHDRVFVWSGSAVCGPEFEAVREACRGVFAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTDDESYREFFWDVCDPNF 743          
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Match: A0A1E7F507_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F507_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.430e-32
Identity = 84/228 (36.84%), Postives = 127/228 (55.70%), Query Frame = 1
Query:  511 DAVFPRELGRLPRQLFHLRRGPLLGP-LLQNSDDPLCLRHLFLRGALEECLRMMEPSMVSLKATEALASLAGDNGGRGGGVEVSSRTLPFARVPVETLAMLADRILVLDTHERVFVWSGADVCGEEFEPVREACRGLFSGEAGSRFPCATVVFLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLPPTD---DESYRDFFWDVCDPSYTSGS 1182
            +  FP +L     +L+HLRRGPL+ P  +++ DD   +R LFLR  LE+CL+MM P+++S  +   ++S A DN                   P ETL++  D I+  D H+ +F+WSGA+     ++ +R+  +      + +RFP   +  L+DG S SR  T+RL PSH DP+D+Q+  FP L+ + PA +  LR+K    D   DES+R +FW V   S  SGS
Sbjct:  742 ELAFPPQLKETLNRLYHLRRGPLISPGPMRSMDDRAEIRGLFLRFPLEDCLKMMRPTVLSTGSMNGISS-AWDN---------------MVSFPAETLSLWDDSIVAADFHDTLFIWSGANCTATRYDGIRDKLKTHLLEVSMNRFPQPELHVLEDGDSMSRRFTARLAPSHADPIDNQIVHFPALSTLDPAALVKLRSKFKFYDSKSDESFRTWFWSVASASNNSGS 953          
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Match: A0A7S0EE52_9CRYP (Protein transport protein SEC23 (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EE52_9CRYP)

HSP 1 Score: 132 bits (331), Expect = 2.910e-28
Identity = 76/207 (36.71%), Postives = 103/207 (49.76%), Query Frame = 1
Query:  514 AVFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSMVSLKATEALASLAGDNGGRGGGVEVSSRTLPFARVPVETLAMLADRILVLDTHERVFVWSGADVCGEEFEPVREACRGLFSGEAGSRFPCATVVFLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLPPTDDESY 1134
            + FP +L  LP  LF  + GPLLG +L + DD   LR +FL+  LE+ LR++ P + S    +                      L F  VPVE  ++L DRIL+LD H +VFVWSG  V G E++ VR+            RFPC  V+  K+G S  R+L  RL PSH+D     + G      +  A   LL+ K  P D+ESY
Sbjct:  577 STFPAQLQGLPLYLFFAQTGPLLGSILNSEDDANVLRRIFLKSNLEDSLRILSPQLFSCSLND-------------------QNVLQFQEVPVEDTSLLPDRILLLDHHTQVFVWSGTQVAGAEYDLVRQTLLSSIKAWTAGRFPCPEVMEFKEGNSMCRWLECRLNPSHRDMASRGVMG-----SLTEAVKGLLQKKFVPMDNESY 759          
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Match: A0A7S2R010_9STRA (Protein transport protein SEC23 n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R010_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.930e-28
Identity = 81/224 (36.16%), Postives = 113/224 (50.45%), Query Frame = 1
Query:  511 DAVFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSMVSLKATEALASLAGDNGGRGGGVEVSSRTLPFARVPVETLAMLADRILVLDTHERVFVWSGADVCGEEFEPVREACRG----LFSGEAGS--RFPCATVVFLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLPPTD---DESYRDFFWDV 1155
            D  FP EL     QL+HLRRG +LG  LQ+ DD +  R+LF+R  LE+ L M+ P +   +                   + S   L    VP  TLA+  + ++  D ++ +FVWSG    G E++ +RE C+     L S   G   RF    +  LK+G S SR LT+RL P+H DP   QL  FP LA + P +++ LR K    D   D S+R +FW V
Sbjct:   59 DFAFPPELADALHQLYHLRRGSMLGHGLQSMDDRVMSRNLFIRLPLEDTLSMIAPVLWKCQLNN----------------DESPPLLLLDPVPCITLALWDNCVIAADHYDCLFVWSGRGTLGPEYDGLREKCKKHLLELVSNSNGDNHRFTPIKIYMLKEGDSMSRRLTTRLAPAHADPPQHQLASFPDLAHLTPTQLQTLRDKFRFYDAKADASFRRWFWSV 266          
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Match: A0A6A7GB13_9CRUS (Protein transport protein SEC23 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GB13_9CRUS)

HSP 1 Score: 128 bits (321), Expect = 5.200e-27
Identity = 75/216 (34.72%), Postives = 113/216 (52.31%), Query Frame = 1
Query:  508 EDAVFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSMVSLKATEALASLAGDNGGRGGGVEVSSRTLPFARVPVETLAMLADRILVLDTHERVFVWSGADVCGEEFEPVREACRGLFSGEAGSRFPCATVVFLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLPPTDDESYRDFFWDV 1155
            ++      L  LP  L+ LR+GP+LGPLLQN DD   LR L+L  +L++ +R+M P+++S  +               G VE          +P+  LA+ ++RIL LD H  VF+WSG +V G E++  R ACR      +  RFP + V   K+ +S  R+L  RLIP+H D +  Q + FP L  + P     L  K   T++ SYR + + +
Sbjct:  588 KERSLEEHLATLPFMLYLLRQGPILGPLLQNPDDISYLRTLYLHASLQDTVRLMLPTLLSFNSL--------------GNVE---------ELPLSNLALQSNRILCLDHHSHVFIWSGKEVSGSEYDSYRNACRERSLVTSTRRFPQSRVFQFKENSSDERWLRCRLIPAHNDSLAQQNEDFPQLDEMEPYLRSKLLEKFMRTNEPSYRQYLFQI 780          
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Match: A0A835D5A4_9MAGN (Protein transport protein SEC23 n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835D5A4_9MAGN)

HSP 1 Score: 123 bits (309), Expect = 1.810e-25
Identity = 76/222 (34.23%), Postives = 111/222 (50.00%), Query Frame = 1
Query:  487 GTEIGRPEDAVFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSMVSLKATEALASLAGDNGGRGGGVEVSSRTLPFARVPVETLAMLADRILVLDTHERVFVWSGADVCGEEFEPVRE--ACRGLFSGEAGSRFPCATVVFLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLPPTDDESYRDFF 1146
            G+++ + +   FP+EL  LP  LFHLRRGPLLG ++ + D+   LR+LFL  + +  LRM+ P  +                 R GG         F  +P   LAM +D  +VLD    VF+W GA++  +E        ACR L       RFP   ++  K+G+S +RY  SRLIP+H+DP  +Q   FP L  +   +   L+      DD S+ +FF
Sbjct:  665 GSQVPKSKLCRFPKELSLLPENLFHLRRGPLLGSIVGHEDERSVLRNLFLNASFDLSLRMVAPRCLMH---------------RDGGT--------FEELPAHDLAMQSDTAVVLDHGTDVFIWLGAELAAQEGRSAAALAACRTLSEELTELRFPAPRILAFKEGSSQARYFVSRLIPAHRDPPYEQEARFPQLRSLTTEQRAKLKNSFLHFDDPSFLEFF 863          
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Match: A0A2P6N5N0_9EUKA (Protein transport protein SEC23 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N5N0_9EUKA)

HSP 1 Score: 122 bits (306), Expect = 3.260e-25
Identity = 76/222 (34.23%), Postives = 117/222 (52.70%), Query Frame = 1
Query:  493 EIGRPEDAVFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSMVSLKATEALASLAGDNGGRGGGVEVSSRTLPFARVPVETLAMLADRILVLDTHERVFVWSGADVCG----EEFEPVREACRGLFSGEAGSRFPCATVVFLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLPPTDDESYRDFF 1146
            ++ R    V P  L  LP++LF L+RGPLLGP+LQ+ DD   +R L ++  L++ LRM++P +  + +     SL G+            + L    +P E LAM +D+IL+LD H  VF W G  V       + E + + C       +  R+P  +    K+GTS +R++  RLIPSHKD  ++QL+ FP +  +   +   L +K   TDD SY  +F
Sbjct:  525 KVSRRGGYVLPTHLSLLPKRLFMLQRGPLLGPILQHMDDIDYMRCLLIQANLQDSLRMIDPPLFMVDS-----SLRGE------------QPLELYPLPTEDLAMQSDKILLLDHHTEVFRWLGGMVGRIHQTADLEGILKRCDEYVESISRHRYPHPSSHSFKEGTSMARWIQCRLIPSHKDTTEEQLENFPQMDELTEEDRRRLLSKFHRTDDLSYLQWF 729          
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Match: A0A7I8KT49_SPIIN (Protein transport protein SEC23 n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KT49_SPIIN)

HSP 1 Score: 122 bits (306), Expect = 4.260e-25
Identity = 73/218 (33.49%), Postives = 112/218 (51.38%), Query Frame = 1
Query:  487 GTEIGRPEDAVFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSMVSLKATEALASLAGDNGGRGGGVEVSSRTLPFARVPVETLAMLADRILVLDTHERVFVWSGADVCGEEFEPVRE--ACRGLFSGEAGSRFPCATVVFLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLPPTDDESY 1134
            G+++ + +   FP+EL  LP  LFHLRRGPLLG +L + D+   LR++FL  + +  LRM+ P  +  +           +GG             F  +P   LAM +D  +VLD    VF+W GA++  +E        AC+ L       RFP   ++  K+G+S +RYL SR+IP+H+DP  +Q   FP L  + P +   L++     DD S+
Sbjct:  672 GSQMPKSKLYQFPKELSLLPENLFHLRRGPLLGSILGHEDERSILRNIFLNASFDLSLRMLAPRCLMHR-----------DGGN------------FEELPAYDLAMQSDTAIVLDHGTDVFIWLGAELAAQEGRSAAALAACKTLAEELTEQRFPAPRILSFKEGSSQARYLVSRMIPAHRDPPYEQEARFPQLRSLTPDQRTRLKSSFLHFDDPSF 866          
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Match: UPI00098DEC09 (protein transport protein SEC23 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098DEC09)

HSP 1 Score: 120 bits (302), Expect = 1.290e-24
Identity = 76/218 (34.86%), Postives = 112/218 (51.38%), Query Frame = 1
Query:  487 GTEIGRPEDAVFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSMVSLKATEALASLAGDNGGRGGGVEVSSRTLPFARVPVETLAMLADRILVLDTHERVFVWSGADVCGEEFEPVRE--ACRGLFSGEAGSRFPCATVVFLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLPPTDDESY 1134
            G+++ + +   FP+EL  LP  LFHLRRGPLLG ++ + D+   LR+LFL  + +  LRM+ P  +                 R GG         F  +P   LAM ++  +VLD    VF+W GA++  +E +      ACR L      +RFP   ++  K+G+S +RY  SRLIP+HKDP  +Q   FP L  + P +   L+A     DD S+
Sbjct:  657 GSQMPKSKLFRFPKELSLLPENLFHLRRGPLLGNIVGHEDERSVLRNLFLNASFDLSLRMLAPRCLMH---------------REGGT--------FEELPAYDLAMQSNTAVVLDHGTDVFIWLGAELASQEGKSAAALAACRTLAEELTENRFPAPRILSFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRTLTPDQRARLKASFLHFDDYSF 851          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L550_9PHAE6.990e-13360.28Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
D8LGM0_ECTSI8.450e-8850.73Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
A0A1E7F507_9STRA1.430e-3236.84Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S0EE52_9CRYP2.910e-2836.71Protein transport protein SEC23 (Fragment) n=1 Tax... [more]
A0A7S2R010_9STRA2.930e-2836.16Protein transport protein SEC23 n=1 Tax=Eucampia a... [more]
A0A6A7GB13_9CRUS5.200e-2734.72Protein transport protein SEC23 (Fragment) n=1 Tax... [more]
A0A835D5A4_9MAGN1.810e-2534.23Protein transport protein SEC23 n=1 Tax=Tetracentr... [more]
A0A2P6N5N0_9EUKA3.260e-2534.23Protein transport protein SEC23 n=1 Tax=Planoproto... [more]
A0A7I8KT49_SPIIN4.260e-2533.49Protein transport protein SEC23 n=2 Tax=Spirodela ... [more]
UPI00098DEC091.290e-2434.86protein transport protein SEC23 n=1 Tax=Asparagus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10139contigH-canaliculatus_F_contig10139:140..3778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue4.4e-17
Seed eggNOG ortholog2850.Phatr47270
Preferred nameSEC23B
KEGG koko:K14006
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
GOsGO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008047,GO:0008150,GO:0030234,GO:0030695,GO:0043085,GO:0043087,GO:0043547,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0050790,GO:0051336,GO:0051345,GO:0060589,GO:0065007,GO:0065009,GO:0098772
EggNOG free text desc.COPII-coated vesicle budding
EggNOG OGsCOG5047@1,KOG1986@2759
Ec32 ortholog descriptionADF-H/Gelsolin-like domain
Ec32 orthologEc-10_002710.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size2043
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10139.164.1prot_H-canaliculatus_F_contig10139.164.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10139 803..2923 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928643.222938-UTR-H-canaliculatus_F_contig10139:139..8021622928643.222938-UTR-H-canaliculatus_F_contig10139:139..802Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10139 140..802 +
1696845509.782061-UTR-H-canaliculatus_F_contig10139:139..8021696845509.782061-UTR-H-canaliculatus_F_contig10139:139..802Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10139 140..802 +
1622928643.2934244-UTR-H-canaliculatus_F_contig10139:2923..37781622928643.2934244-UTR-H-canaliculatus_F_contig10139:2923..3778Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10139 2924..3778 +
1696845509.8476753-UTR-H-canaliculatus_F_contig10139:2923..37781696845509.8476753-UTR-H-canaliculatus_F_contig10139:2923..3778Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10139 2924..3778 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928643.236403-CDS-H-canaliculatus_F_contig10139:802..8321622928643.236403-CDS-H-canaliculatus_F_contig10139:802..832Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10139 803..832 +
1696845509.7957926-CDS-H-canaliculatus_F_contig10139:802..8321696845509.7957926-CDS-H-canaliculatus_F_contig10139:802..832Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10139 803..832 +
1622928643.2563903-CDS-H-canaliculatus_F_contig10139:1487..16191622928643.2563903-CDS-H-canaliculatus_F_contig10139:1487..1619Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10139 1488..1619 +
1696845509.8084545-CDS-H-canaliculatus_F_contig10139:1487..16191696845509.8084545-CDS-H-canaliculatus_F_contig10139:1487..1619Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10139 1488..1619 +
1622928643.2667847-CDS-H-canaliculatus_F_contig10139:2164..23111622928643.2667847-CDS-H-canaliculatus_F_contig10139:2164..2311Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10139 2165..2311 +
1696845509.8282952-CDS-H-canaliculatus_F_contig10139:2164..23111696845509.8282952-CDS-H-canaliculatus_F_contig10139:2164..2311Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10139 2165..2311 +
1622928643.2798126-CDS-H-canaliculatus_F_contig10139:2707..29231622928643.2798126-CDS-H-canaliculatus_F_contig10139:2707..2923Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10139 2708..2923 +
1696845509.8381143-CDS-H-canaliculatus_F_contig10139:2707..29231696845509.8381143-CDS-H-canaliculatus_F_contig10139:2707..2923Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10139 2708..2923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10139.164.1

>prot_H-canaliculatus_F_contig10139.164.1 ID=prot_H-canaliculatus_F_contig10139.164.1|Name=mRNA_H-canaliculatus_F_contig10139.164.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=175bp
MMEPSMVSLKATEALASLAGDNGGRGGGVEVSSRTLPFARVPVETLAMLA
DRILVLDTHERVFVWSGADVCGEEFEPVREACRGLFSGEAGSRFPCATVV
FLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLP
PTDDESYRDFFWDVCDPSYTSGSN*
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mRNA from alignment at H-canaliculatus_F_contig10139:140..3778+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10139.164.1 ID=mRNA_H-canaliculatus_F_contig10139.164.1|Name=mRNA_H-canaliculatus_F_contig10139.164.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3639bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10139:140..3778+ (Hapterophycus canaliculatus Oshoro5f female)
ACAGAGAGCGGCACAAACCAGCTTGAAGTGGAGGAGGCCCGCGTGGCGGT AGACACCGTCGTCCAGGAAGTCTCCTCCAGGTTTCGCCAACTCCGGAAAG GGCGGCCCGGCGGCCTGGGCGGCAGCGGTGGCACCTCGACTACCGCTGCC ACCACCACCATCGCCACCACCACCACTAGCAACGAAAACAGCAACAACAC CATCGAAGGCAACGGTTTGCCTTCGAGACCCGCACCAACGACCTGGACAC CGGCCACGCCGCTGCCCGCCGCGCTGAAAGAGCGAGGCTACGGCAGCACC GGCAACGGCGGCGGCGGCGTCGGCGATCTGCTGGGGTCGTCGCTCGAGGA TGCGGAGGGGGGAGAGGCGGGTGGGTTTGATGCTGCGTCACCGCCGTCCG AGGGCACGGCGGGTCGAGAGGCGGCGACCGCTCAAGCACCGCCGGCAGGG GGTGGCGCCCGCGGGGTTGCCGGCATCGGCCTCGGAGGGACGGAGATTGG CCGCCCAGAGGACGCCGTTTTTCCGCGGGAGCTGGGGCGGCTGCCCCGGC AGCTGTTCCACCTGAGGAGGGGGCCGCTGCTGGGTCCGCTGCTCCAGAAC TCGGACGACCCTCTGTGCCTCCGGCATTTGTTCTTGAGGGGCGCCCTGGA GGAGTGCTTGAGGATGATGGAGCCCTCGATGGTGTCCTTGAAGGTGTGGT TTCGGGATGAGTAGGTCCGGAGGGGTACGGCGTGGGAGGGTTGTGGTTGA GACACGACGCGGAAGGGGTTGGAATGGTACGGCGTGGCGGGTCGTGGGAT GGGTACGGAGACAAAGTGCGGGACGAGTAGCGCGTGCAGCACCACGCTCT TCGTGGTATGGGCTGTGCGGTGCCGTGGGCGGCTTCGAAGATGTCGGCGA AGATGTCGGCGCCGGGGGGAGGAGAGCCTTCCACGAGCGCGGATCGCGTG ACCTCTGGAGGTGACATGCGCACAGCGACTCGACTGAGTTTCCTCCGAAC TTGAGATGCGGCGGCCGGGCCCACCGGGCGTTCATCACCAACCACAGCAC CTTCTGAACACGGCGGGTCTTTCAAGAGAGATGGAAATGGAGTGGGGATG GTGTTGTCGTCGGCTTGTGTAACGAGCGCTGATTGTCGCTTTCGGCCGTC ATGTTCAGGTGCGAAGCGCAGTCTGGCGTGCGTTCGGGCCCAGCGCGTTG ATCGTTCTCTGCACCCTCTGGTTGGCCAAACAAAGCAAACCAACTAGACC AACCAAACCAACTAGCAGAATCGCTCTGCCGAGGCACCGCCCGCGCTAAC CAAGTCAGGCTTTCTGCCCCGCAAAACCGCCTGCGTCGCGCGCACCAGGC GACGGAAGCGTTAGCGAGCCTGGCGGGGGACAACGGCGGCCGCGGCGGCG GTGTCGAGGTGTCCTCGCGTACGCTGCCGTTCGCTCGGGTGCCGGTGGAG ACCTTGGCGATGCTTGCCGACCGGATCCTGGTGAGCTGCTCGTTTTCCGT GCCCACACCCGAGAGACGCGCAGACGAGTCGGTATTACGCCGGCGGCCGC AACCACACGTGCCGCTCCGCACCCTGCCGCGGGTTTCCGGGTGAACGCTT GCGGCGACCCCATGAGCTTGCAGGGTTGCAGCTCGTCGCGCAGTTCTGTC GCGATCGCTTCGTTTCCGCGGACGGCTCGCGTTTGCCGCTGTACCCAGGT TCTCCTACACTTCGTTGGTTCACGCCGCACGAACTTGGAACTGATGTGTG TGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTCTGTG TCTGTGTCTGTGTCTGTGTGTGCGCGTTTGTTTGTAGGGCATTCCCACTT GACGCGCGGGGCCGCGACAGGGCTGTGAGCCTGTGTCGTGCTCAGCTACC ACGATTTCTGGTGGGCATTTTTTGCTGTTGTCGACACAACGTCCCCCTCT ACTCCCCATGATAACGTCCGCGCGTTTACCTTATCTTTCTGATCGTTTCC GGACGCCGCAACAACAAAAATCCAGGTGCTGGACACCCACGAACGCGTCT TCGTGTGGAGCGGTGCCGACGTGTGCGGAGAGGAGTTCGAACCCGTGCGA GAGGCGTGCAGGGGCCTTTTTTCGGGGGAGGCGGGGTCGCGATTCCCCTG CGCCACGGTGGTTTTCCTCAAGGTACGGGGTTATCGTGGGGGGTTGCTTT TCTCGGAAAAGAAGAGACGTCGAAAAAGAGATTCGTTTCCGTTGTCCTTT CTCCCGCGAGCGGCCGTGCGTGTGTCACGGGGGCGCAAGCATGTCCTTTC CGGAAGCAGCCAAAAGAACTCCACCAGAAGCATGCACGGAGACAGGAAAA TGCTGTAGACACACGAGGCCCGGCGAAAGAGCTGCCGTAGTATGATGAGT AAACGGAGGGCGGGCCCGCTACAAGATCTCGAGCACGTCGGCCACGCCGG CCCTGGCAGCGCCCCACAAACGACTTCCAAGTCGGCGGCGCCAAGCAAAC CTCCGCCTGGGAGTGCACCCCGCCACCCAGCCTGATATACAACCCCTACC CCCGCACGCACTCACCAGGACGGGACGTCCTGGTCGCGCTACCTCACGTC GAGGCTCATCCCTTCCCACAAGGACCCGGTGGACGACCAGCTCAAGGGTT TCCCGGGGCTGGCTGGCGTGCCCCCGGCGGAGGTTGAGCTGCTGAGGGCG AAGCTGCCGCCGACCGACGACGAGAGCTACCGCGACTTCTTCTGGGACGT GTGTGACCCCAGCTATACCAGCGGCAGCAACTAGTGGCCGCCGCCGCCGC CGCCGCCGCCGCCGCATGGCCCTCTCGGGGACTGCCCCCGGTTGGCGTAA ACTGGGCTCGTGTGGGTGTGTCTGCCGAGGTACTCCAATTTCTTCGACGG CGGCAGCAGCAGCAGCAGCATCGCGAAGTGGTTGGGTTGTCGTCGGAAAG AAATGGGAAGAAACACAAGCGTGGGCACTTGTCGGCACCCACCCACACAC ACACGCCCGGCGCCCCGCGGGCAGCGAGAGGGAGGTACGGGTATAGTAAT GGAGGCTGTTGGCGTTGGCCCTTGCACTCTGTTGTCTACAGACAAGCTTT CGGCCTGCGAGCGCGCGCATGCGCGGGCCAGAAGAGCGACACACTCGTTT CAATTTTTGCTCTTCTTCGTTCGCGCGAAAGGGTCCAGGGCGGGGGAGGA GATTGGCACGGCACTAAGAGGGTCAGCGTTCCCGCACCGCTTTTTTTTTC TGGCGGGGGTTGAAACAGGGGGCCGAAAATCGTTGTCGGGACACCGGAAA GCGGCGAAGCTGTGACGCACCGCGAGCGTAGCGCCGTGGTTGTGGATATA TCTTTGTACCTGGTACATGCGTTTTCTGTTGTCCTGGTAGGGAGCGTTGA CTGCGATGCCGATGTACTGAGCGAAGGGAAAATAGTCGGAGTACCGCCCT TACAGTACTTTGGGTTTGGTGTCACGTTTCCTTGTTTTCATCCCCATTTC CGCGAGCTCGATGGTCCGACCAACCAGGATCTTGGAGCTTCGGTCCTTGG CCTAGAGACAAAGGAACAGGAGTAGCTACTACGTGGTAGGGGGGCTGCGG GACAGAGTCGTTGTCGATCGTCGCGCTGCGTACCGCGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10139:140..3778+

>mRNA_H-canaliculatus_F_contig10139.164.1 ID=mRNA_H-canaliculatus_F_contig10139.164.1|Name=mRNA_H-canaliculatus_F_contig10139.164.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1050bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10139:140..3778+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATGGAGCCCTCGATGGTGTCCTTGAAGATGATGGAGCCCTCGATGGT
GTCCTTGAAGGCGACGGAAGCGTTAGCGAGCCTGGCGGGGGACAACGGCG
GCCGCGGCGGCGGTGTCGAGGTGTCCTCGCGTACGCTGCCGTTCGCTCGG
GTGCCGGTGGAGACCTTGGCGATGCTTGCCGACCGGATCCTGGCGACGGA
AGCGTTAGCGAGCCTGGCGGGGGACAACGGCGGCCGCGGCGGCGGTGTCG
AGGTGTCCTCGCGTACGCTGCCGTTCGCTCGGGTGCCGGTGGAGACCTTG
GCGATGCTTGCCGACCGGATCCTGGTGCTGGACACCCACGAACGCGTCTT
CGTGTGGAGCGGTGCCGACGTGTGCGGAGAGGAGTTCGAACCCGTGCGAG
AGGCGTGCAGGGGCCTTTTTTCGGGGGAGGCGGGGTCGCGATTCCCCTGC
GCCACGGTGGTTTTCCTCAAGGTGCTGGACACCCACGAACGCGTCTTCGT
GTGGAGCGGTGCCGACGTGTGCGGAGAGGAGTTCGAACCCGTGCGAGAGG
CGTGCAGGGGCCTTTTTTCGGGGGAGGCGGGGTCGCGATTCCCCTGCGCC
ACGGTGGTTTTCCTCAAGGACGGGACGTCCTGGTCGCGCTACCTCACGTC
GAGGCTCATCCCTTCCCACAAGGACCCGGTGGACGACCAGCTCAAGGGTT
TCCCGGGGCTGGCTGGCGTGCCCCCGGCGGAGGTTGAGCTGCTGAGGGCG
AAGCTGCCGCCGACCGACGACGAGAGCTACCGCGACTTCTTCTGGGACGT
GTGTGACCCCAGCTATACCAGCGGCAGCAACTAGGACGGGACGTCCTGGT
CGCGCTACCTCACGTCGAGGCTCATCCCTTCCCACAAGGACCCGGTGGAC
GACCAGCTCAAGGGTTTCCCGGGGCTGGCTGGCGTGCCCCCGGCGGAGGT
TGAGCTGCTGAGGGCGAAGCTGCCGCCGACCGACGACGAGAGCTACCGCG
ACTTCTTCTGGGACGTGTGTGACCCCAGCTATACCAGCGGCAGCAACTAG
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