mRNA_H-canaliculatus_F_contig10138.163.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10138.163.1
Unique NamemRNA_H-canaliculatus_F_contig10138.163.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10138.163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10138contigH-canaliculatus_F_contig10138:816..3019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1294
Cds size969
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10138.163.1prot_H-canaliculatus_F_contig10138.163.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10138 989..2867 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928643.1214273-UTR-H-canaliculatus_F_contig10138:815..9881622928643.1214273-UTR-H-canaliculatus_F_contig10138:815..988Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10138 816..988 -
1696845509.7444355-UTR-H-canaliculatus_F_contig10138:815..9881696845509.7444355-UTR-H-canaliculatus_F_contig10138:815..988Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10138 816..988 -
1622928643.1733773-UTR-H-canaliculatus_F_contig10138:2867..30191622928643.1733773-UTR-H-canaliculatus_F_contig10138:2867..3019Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10138 2868..3019 -
1696845509.7727375-UTR-H-canaliculatus_F_contig10138:2867..30191696845509.7727375-UTR-H-canaliculatus_F_contig10138:2867..3019Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10138 2868..3019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928643.1368358-CDS-H-canaliculatus_F_contig10138:988..14431622928643.1368358-CDS-H-canaliculatus_F_contig10138:988..1443Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10138 989..1443 -
1696845509.7529004-CDS-H-canaliculatus_F_contig10138:988..14431696845509.7529004-CDS-H-canaliculatus_F_contig10138:988..1443Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10138 989..1443 -
1622928643.1533074-CDS-H-canaliculatus_F_contig10138:2353..28671622928643.1533074-CDS-H-canaliculatus_F_contig10138:2353..2867Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10138 2354..2867 -
1696845509.7645512-CDS-H-canaliculatus_F_contig10138:2353..28671696845509.7645512-CDS-H-canaliculatus_F_contig10138:2353..2867Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10138 2354..2867 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10138.163.1

>prot_H-canaliculatus_F_contig10138.163.1 ID=prot_H-canaliculatus_F_contig10138.163.1|Name=mRNA_H-canaliculatus_F_contig10138.163.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=323bp
MIWVACNPFRLSVESSHRLLLLKKYPGAANVHGNRMCSTYTAASSRRDHR
ISTSFATLPPHISVDSCTLRPYTLQNKPHAEPCQVVSSEDVAKEVLKHLE
PSVAAAAREGAERGRGGGGSVGASMAWGSAPILSLFKFSSPKDWTYKDDI
LLRATHLVVGGSADIDCNAFQAKIVKSFTPARSKLSSNMREPMLKSMTTR
LEQFAKFLPALVQQEEVEYLSEFVLQELEREKSGEGDDEEDGDIGSFVDD
SVSLDHITNLFPRFWKAVSRSQKRKRRRPRSQVLFRHSRDLWVLLWCFVV
LFQQGGDCICVELWCRNPGRWV*
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mRNA from alignment at H-canaliculatus_F_contig10138:816..3019-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10138.163.1 ID=mRNA_H-canaliculatus_F_contig10138.163.1|Name=mRNA_H-canaliculatus_F_contig10138.163.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2204bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10138:816..3019- (Hapterophycus canaliculatus Oshoro5f female)
GTCATAGCCCAGGCGCTGGAAGCACGAGCGTCAGCCACGTTTCGCGGCCA
CCTAGGACATATCCTTCTCCAGCAGAGCGGGGTTCAAGTAAGCGAAGGAC
GGCATGGTACCCAATGCAAAAATAAACGGCAGATTCCGGTCCCGGGGATT
GCATGATCTGGGTAGCGTGTAACCCTTTTCGTCTGTCGGTTGAATCATCC
CACCGCCTGCTGCTGTTAAAAAAGTACCCCGGCGCCGCCAACGTGCATGG
AAATCGAATGTGTAGTACCTACACCGCCGCCAGCTCTCGTCGTGATCATC
GCATCTCGACCTCCTTCGCGACGCTGCCGCCGCACATATCGGTGGACAGC
TGTACCCTCCGCCCTTACACCCTACAAAATAAACCTCACGCCGAACCCTG
TCAGGTGGTCTCTTCTGAGGATGTTGCGAAGGAGGTGTTGAAACACCTTG
AGCCGAGCGTTGCAGCCGCGGCACGGGAGGGGGCGGAGAGAGGGCGCGGA
GGCGGGGGTTCAGTTGGCGCCTCTATGGCGTGGGGTTCGGCTCCTATCTT
GTCTCTGTTCAAGTTCAGCTCTCCGAAGGACTGGACCTATAAGGACGACA
TCTTGCTTCGAGCTACGCACTTGGTCGTAGGGGGGAGCGCCGACATAGAC
TGCAATGCGTTCCAAGGTGTGGTACCAGGACTACCGTATGTGACTCAAGA
TATCACACCTACATGAGAAACCACACCCCCCACAGGATACGACACCCCAA
TGATAACATGCTAGTTTACGCCGCACATATTTAGGGGGCTCCTCCTTCTT
GTTGCCGGGGTGACAGCATCTGTGCCTGGGCATCATACACAACCACATGG
AATGCAACGTTGTTTGTGGCTCGTGGTGTAGGTTTGTGGTTTGTGGTGTT
GGATTTTTGGTCATGTTCTTTGCGTGATTCTTCTGGTCGTACAAAAGGAA
GGTACGCAGCTGCCAACTTTCCAGTGAGGGGAGCAGGGCGGGTTTTATTC
GAAACTTTCTTTGGCGTTGAAGGGGGTGGTCATCGCCGAGGTCGTGGGGT
CAGGATTTTCGTTGCTTCGATTAAGCCCCTTTGTTTTAACCCTAACCCCT
TGCTACCACTTAAGGCAGGCCCCTACTGTGCGGGGCAGCTGCTCGTGTTC
GTGCAGGCACTGCTATCACACACCCGCAGTATCACACCCTTTCAAATGTG
CTGCAGCAGCGGTTCAATTCTACAAGCAGTTTATCACATCCCCTCATTTA
ATCACAATCCCAAGCACACCCTGCTGTAGGTGTTCGGACGTGCCGTCATT
CCCGTGGTCCATCACACCCCTTAGGGGTCCCTGCGAGCTTCACTTTACCG
CCCGAAGGGTACATAAGATACCACACCCCCCACAGAACATCACACCCGGT
GTTATTTTGTGTTATAGGGAGTATGGCGTGTCCTCGAAACCTGTTCATGT
AGATATGGACACATCTTGGCCGCCGCCCTACCTGCGGGTCGCAGTCCATA
CTGCCGAGGTTTATGCCAAAATCAACATCGACTGATCGCTCCGCAAATTT
TGTTTTGCTTCTCATGCGTCACGCAGCAAAAATCGTCAAAAGCTTCACAC
CGGCGCGTTCGAAGCTGTCGAGCAACATGCGTGAACCGATGCTCAAGTCC
ATGACCACGAGGCTCGAGCAGTTCGCCAAGTTCCTCCCAGCGCTCGTTCA
GCAAGAAGAGGTGGAGTACCTGTCCGAGTTCGTCCTTCAGGAACTGGAGC
GGGAGAAGAGCGGCGAAGGGGACGACGAAGAAGACGGCGACATCGGCTCG
TTCGTCGACGACTCGGTCTCGCTCGACCACATCACAAATCTTTTCCCTCG
GTTTTGGAAGGCGGTGAGCCGATCACAAAAGAGGAAACGGAGGCGACCCC
GTAGTCAAGTTTTGTTTCGCCATTCCCGTGACCTTTGGGTTTTGCTGTGG
TGTTTTGTAGTGTTGTTCCAGCAGGGTGGCGATTGTATCTGCGTTGAGTT
ATGGTGCCGAAATCCCGGGAGATGGGTATGATTGAGCCACCGCTGAACAG
CGATGACGAGCCAAAGCACGGGGCGGGAAGTACCCGTACCGCGTGATATC
CTAGAGCTCTCTGCCCTTGCCATTTTTTGTTTCCTTGAAAAGGAGTACTC
CTTTCGTTCCCTTTGCAGCATTTCGTTTTGTGGATGTTCTCTCTTTGCGT
TGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10138:816..3019-

>mRNA_H-canaliculatus_F_contig10138.163.1 ID=mRNA_H-canaliculatus_F_contig10138.163.1|Name=mRNA_H-canaliculatus_F_contig10138.163.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1938bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10138:816..3019- (Hapterophycus canaliculatus Oshoro5f female)
ATGATCTGGGTAGCGTGTAACCCTTTTCGTCTGTCGGTTGAATCATCCCA
CCGCCTGCTGCTGTTAAAAAAGTACCCCGGCGCCGCCAACGTGCATGGAA
ATCGAATGTGTAGTACCTACACCGCCGCCAGCTCTCGTCGTGATCATCGC
ATCTCGACCTCCTTCGCGACGCTGCCGCCGCACATATCGGTGGACAGCTG
TACCCTCCGCCCTTACACCCTACAAAATAAACCTCACGCCGAACCCTGTC
AGGTGGTCTCTTCTGAGGATGTTGCGAAGGAGGTGTTGAAACACCTTGAG
CCGAGCGTTGCAGCCGCGGCACGGGAGGGGGCGGAGAGAGGGCGCGGAGG
CGGGGGTTCAGTTGGCGCCTCTATGGCGTGGGGTTCGGCTCCTATCTTGT
CTCTGTTCAAGTTCAGCTCTCCGAAGGACTGGACCTATAAGGACGACATC
TTGCTTCGAGCTACGCACTTGGTCGTAGGGGGGAGCGCCGACATAGACTG
CAATGCGTTCCAAGATGATCTGGGTAGCGTGTAACCCTTTTCGTCTGTCG
GTTGAATCATCCCACCGCCTGCTGCTGTTAAAAAAGTACCCCGGCGCCGC
CAACGTGCATGGAAATCGAATGTGTAGTACCTACACCGCCGCCAGCTCTC
GTCGTGATCATCGCATCTCGACCTCCTTCGCGACGCTGCCGCCGCACATA
TCGGTGGACAGCTGTACCCTCCGCCCTTACACCCTACAAAATAAACCTCA
CGCCGAACCCTGTCAGGTGGTCTCTTCTGAGGATGTTGCGAAGGAGGTGT
TGAAACACCTTGAGCCGAGCGTTGCAGCCGCGGCACGGGAGGGGGCGGAG
AGAGGGCGCGGAGGCGGGGGTTCAGTTGGCGCCTCTATGGCGTGGGGTTC
GGCTCCTATCTTGTCTCTGTTCAAGTTCAGCTCTCCGAAGGACTGGACCT
ATAAGGACGACATCTTGCTTCGAGCTACGCACTTGGTCGTAGGGGGGAGC
GCCGACATAGACTGCAATGCGTTCCAAGCAAAAATCGTCAAAAGCTTCAC
ACCGGCGCGTTCGAAGCTGTCGAGCAACATGCGTGAACCGATGCTCAAGT
CCATGACCACGAGGCTCGAGCAGTTCGCCAAGTTCCTCCCAGCGCTCGTT
CAGCAAGAAGAGGTGGAGTACCTGTCCGAGTTCGTCCTTCAGGAACTGGA
GCGGGAGAAGAGCGGCGAAGGGGACGACGAAGAAGACGGCGACATCGGCT
CGTTCGTCGACGACTCGGTCTCGCTCGACCACATCACAAATCTTTTCCCT
CGGTTTTGGAAGGCGGTGAGCCGATCACAAAAGAGGAAACGGAGGCGACC
CCGTAGTCAAGTTTTGTTTCGCCATTCCCGTGACCTTTGGGTTTTGCTGT
GGTGTTTTGTAGTGTTGTTCCAGCAGGGTGGCGATTGTATCTGCGTTGAG
TTATGGTGCCGAAATCCCGGGAGATGGGTATGACAAAAATCGTCAAAAGC
TTCACACCGGCGCGTTCGAAGCTGTCGAGCAACATGCGTGAACCGATGCT
CAAGTCCATGACCACGAGGCTCGAGCAGTTCGCCAAGTTCCTCCCAGCGC
TCGTTCAGCAAGAAGAGGTGGAGTACCTGTCCGAGTTCGTCCTTCAGGAA
CTGGAGCGGGAGAAGAGCGGCGAAGGGGACGACGAAGAAGACGGCGACAT
CGGCTCGTTCGTCGACGACTCGGTCTCGCTCGACCACATCACAAATCTTT
TCCCTCGGTTTTGGAAGGCGGTGAGCCGATCACAAAAGAGGAAACGGAGG
CGACCCCGTAGTCAAGTTTTGTTTCGCCATTCCCGTGACCTTTGGGTTTT
GCTGTGGTGTTTTGTAGTGTTGTTCCAGCAGGGTGGCGATTGTATCTGCG
TTGAGTTATGGTGCCGAAATCCCGGGAGATGGGTATGA
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