mRNA_H-canaliculatus_F_contig10136.162.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10136.162.1
Unique NamemRNA_H-canaliculatus_F_contig10136.162.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10136.162.1 vs. uniprot
Match: D7FIA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIA2_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 4.840e-18
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  193 EHCNAAVTHVRSQAAAIRKTTSEYLKGELLRGEGLCNGDPKW 318
            EHCNAAVTHVRS+AAAIRKTTSEYLKGELLRGE L NGDPKW
Sbjct:    2 EHCNAAVTHVRSKAAAIRKTTSEYLKGELLRGERLTNGDPKW 43
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10136.162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIA2_ECTSI4.840e-1892.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10136contigH-canaliculatus_F_contig10136:908..1415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size508
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10136.162.1prot_H-canaliculatus_F_contig10136.162.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10136 1076..1396 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928643.0507135-UTR-H-canaliculatus_F_contig10136:907..10751622928643.0507135-UTR-H-canaliculatus_F_contig10136:907..1075Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10136 908..1075 +
1696845509.708083-UTR-H-canaliculatus_F_contig10136:907..10751696845509.708083-UTR-H-canaliculatus_F_contig10136:907..1075Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10136 908..1075 +
1622928643.0790718-UTR-H-canaliculatus_F_contig10136:1396..14151622928643.0790718-UTR-H-canaliculatus_F_contig10136:1396..1415Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10136 1397..1415 +
1696845509.7340996-UTR-H-canaliculatus_F_contig10136:1396..14151696845509.7340996-UTR-H-canaliculatus_F_contig10136:1396..1415Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10136 1397..1415 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928643.0655696-CDS-H-canaliculatus_F_contig10136:1075..13961622928643.0655696-CDS-H-canaliculatus_F_contig10136:1075..1396Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10136 1076..1396 +
1696845509.721256-CDS-H-canaliculatus_F_contig10136:1075..13961696845509.721256-CDS-H-canaliculatus_F_contig10136:1075..1396Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10136 1076..1396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10136.162.1

>prot_H-canaliculatus_F_contig10136.162.1 ID=prot_H-canaliculatus_F_contig10136.162.1|Name=mRNA_H-canaliculatus_F_contig10136.162.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=107bp
MGTFMASSPLWITVAETLAPEQLAFQVLRSCFPDCGGLGPDMGDGCVAVF
LRRHVKMHTFNEHEQVVTFEEHARNCDLTPMSEQTPTLTIGMAPKLAGEF
ATCCLL*
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mRNA from alignment at H-canaliculatus_F_contig10136:908..1415+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10136.162.1 ID=mRNA_H-canaliculatus_F_contig10136.162.1|Name=mRNA_H-canaliculatus_F_contig10136.162.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=508bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10136:908..1415+ (Hapterophycus canaliculatus Oshoro5f female)
GCAATTGTATAGGAAGTGGCCCCATTGCGTCAAGAAATCAGCCACCGAAA
CCTTTGTATATGCTTCAATGAAAGAGCACTCGAGACATCGTGCGTGATGA
TCCCTGTTGGGACGAAATGTCTCAAAAAATAGTCAAGCGGCAGGAGGCGG
CTCGTCTCGTCCTATGAAATGGGAACATTCATGGCGAGCTCACCACTTTG
GATCACCGTTGCAGAGACCCTCGCCCCTGAGCAGCTCGCCTTTCAAGTAC
TCAGAAGTTGTTTTCCGGATTGCGGCGGCTTGGGACCGGACATGGGTGAC
GGCTGCGTTGCAGTGTTCCTGCGGAGACACGTCAAGATGCACACATTCAA
CGAGCACGAACAGGTCGTGACCTTTGAAGAGCACGCGCGCAACTGTGACT
TGACGCCCATGTCTGAACAAACCCCAACTCTTACCATAGGAATGGCGCCG
AAGCTTGCTGGCGAATTTGCAACCTGTTGTCTGTTGTAGCGGGATTACGT
CGCGTGTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10136:908..1415+

>mRNA_H-canaliculatus_F_contig10136.162.1 ID=mRNA_H-canaliculatus_F_contig10136.162.1|Name=mRNA_H-canaliculatus_F_contig10136.162.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=642bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10136:908..1415+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAACATTCATGGCGAGCTCACCACTTTGGATCACCGTTGCAGAGAC
CCTCGCCCCTGAGCAGCTCGCCTTTCAAGTACTCAGAAGTTGTTTTCCGG
ATTGCGGCGGCTTGGGACCGGACATGGGTGACGGCTGCGTTGCAGTGTTC
CTGCGGAGACACGTCAAGATGCACACATTCAACGAGCACGAACAGGTCGT
GACCTTTGAAGAGCACGCGCGCAACTGTGACTTGACGCCCATGTCTGAAC
AAACCCCAACTCTTACCATAGGAATGGCGCCGAAGCTTGCTGGCGAATTT
GCAACCTGTTGTCTGTTGTAGATGGGAACATTCATGGCGAGCTCACCACT
TTGGATCACCGTTGCAGAGACCCTCGCCCCTGAGCAGCTCGCCTTTCAAG
TACTCAGAAGTTGTTTTCCGGATTGCGGCGGCTTGGGACCGGACATGGGT
GACGGCTGCGTTGCAGTGTTCCTGCGGAGACACGTCAAGATGCACACATT
CAACGAGCACGAACAGGTCGTGACCTTTGAAGAGCACGCGCGCAACTGTG
ACTTGACGCCCATGTCTGAACAAACCCCAACTCTTACCATAGGAATGGCG
CCGAAGCTTGCTGGCGAATTTGCAACCTGTTGTCTGTTGTAG
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