prot_H-canaliculatus_F_contig1182.1609.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1182.1609.1
Unique Nameprot_H-canaliculatus_F_contig1182.1609.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length808
Homology
BLAST of mRNA_H-canaliculatus_F_contig1182.1609.1 vs. uniprot
Match: D7G4V8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V8_ECTSI)

HSP 1 Score: 283 bits (723), Expect = 3.610e-78
Identity = 299/843 (35.47%), Postives = 383/843 (45.43%), Query Frame = 0
Query:    9 GNPVAGQNGLGSSYQRYVLHHLPSLHHLDLKRVTDHDHD--QQRGTSHLKHPXXXXXXXXXXXXXXXXXXXXXXXXXXDRXXXXXXXXXXXXXXXSVSARSRAMSLSESG--RP-GAAKGFGRPSTTDGTHVGNKNXXXXXXXXXXKDINATPSSRMQEQQHNRWASAKDD-------SNGGSSERQ-----GVSGQPGAEATACTSVGNLEMNILLLLQGCRLGFG-ITMSGYQIKLREQVRPNVFTSTGSSGMSRAAXXXXXXXXXXXXXXXXXXXRTALKERREAIEAARRDQECWERRGRASTSSRPRHRTP------GRENIK------------------AISGNN----GSTGGGVGGXARSSPXXXXRSPIPPESRRTSSAGHPGSGSRAAVTNDGGVXXXXXXXXXXXXXXXXXXXXXGGVSGGVGYFELEQRISR-KDGKGEAARTEEGERLSRSRQGSGSGITLKVYGDVWRWLGDEKVCSLREKVVEARFSLVHVTSVARKAEAIAQTFPNLSCLRMLDNDICSLKQLERLRPLLSGLHTLHLGRKNSLTKNASLVALRAWVKVQGCGARGHLILEIPPSTMRAEEEHCLSRGRDGSHHYPQQQQRQPESNTEGTRSRQSASSLPPDGAANVIQAPXXXXXXXXXXXXXXXXXXXAAARGLGADGNNIH--------VAVEQRRKGGGLSSEASRERAL---------AGASAERGTATAA----GALLGSRGPSCSEGHLPVPGAAFPPPRTATALPAAAAADAAFERLLSARERAASSSWGAIVLSIGGENSRRGAQTTRDVARDSPG-SGSAWMTSSRGAKLVCNLMV 782
            GNPVAGQNGLGSSY+ Y+L HLP+LHHLDLKRVTDH      Q    +L  P                                           S +A   AM  S  G  +P G ++  G   +T GT+   ++             +A   SR +    +  +S +         S GG   R       V   P  +  A  S G +       L    +  G   ++G     R   R  V  + G+ GMSRAA                   +TALKERREAIEAAR   ECWERRG  S +SR RHR+       G++N                    A +G N     +TGGG        PXXXXRSP     RRTSS+ + GS         GGV                     G +SGGVGYFELEQR+   + G G+ A +  G        G   GITLKVYGDVWRWLGD KVCSLRE+VVEARFSLVHVTSVARKA  IAQTFPNLSCL++LDNDI SL+QLERLRP+L+ L  LHLG KN +T+NAS  ALRAWVK QG       +  + P    A +   +  G D   +  QQQQ  P +N   ++ + S  S P   A   + A                    +   G+ +  +N H        + + +R + G     A +++ +         +G   E+ T +A+    G  + S+  + +E +     AA          P  +  DAAFERL  AR RAASSSWGAI L+        G+ T   +  D  G +G AW +S+RGAKL CN MV
Sbjct:  263 GNPVAGQNGLGSSYRSYILQHLPNLHHLDLKRVTDHGQSISHQGSDGNLAPPTTRTASADDARESRGGGNNGR----------------------SRTAFHEAMGNSGKGSRKPSGTSRTGGNGVSTSGTNRNERSNDGFPVLLGQG--SADTQSRAEHHPGSSLSSPQXXXXXXXXXSRGGDDPRGLHRAGPVMSAPAPDKGAIGSDGRVRGGAWEQLSQQTMAAGECAITGGDSSTRA-ARKEVVLAVGN-GMSRAAEAREAVALKRAKTDRDEREKTALKERREAIEAAR---ECWERRGGGSITSRARHRSSRDSTSTGKDNTSRKTSAHVKPPPASSPSCSAPTGPNPADSSNTGGGAVPPRPEPPXXXXRSPTXXX-RRTSSSANTGSEVAGVARTGGGVGGRRSGNAGRR----------GSISGGVGYFELEQRLRHNRMGVGDVAASGGGV------PGGAGGITLKVYGDVWRWLGDGKVCSLREQVVEARFSLVHVTSVARKASTIAQTFPNLSCLQLLDNDIRSLRQLERLRPMLTNLTALHLG-KNPVTRNASEAALRAWVKGQG-----PCVSLVSPGHGPASDGRSICTG-DRRQYTQQQQQHCPLTNASASQQQYSPPSTPTTQATPPLPAAPTPHPPCGTGSNNAKPLGGSDV-GVPSRNSNGHEKGCEKTTIRILERGEAGNTVIAARKDKQMQSNGDNKPGSGGIIEQSTRSASERQSGPTVRSQHTAVNESNNTAASAALVRVECTDRDPLVST-DAAFERLAEARSRAASSSWGAIALA--------GSSTASHLGDDPDGVNGMAWASSARGAKLACNGMV 1042          
BLAST of mRNA_H-canaliculatus_F_contig1182.1609.1 vs. uniprot
Match: A0A6H5JFV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV0_9PHAE)

HSP 1 Score: 266 bits (679), Expect = 5.460e-72
Identity = 303/863 (35.11%), Postives = 381/863 (44.15%), Query Frame = 0
Query:    1 SLLELSLDGNPVAGQNGLGSSYQRYVLHHLPSLHHLDLKRVTDHDHDQQRGTSHLKHPXXXXXXXXXXXXXXXXXXXXXXXXXXDRXXXXXXXXXXXXXXXSVSARSRAMSLSESG--RP-GAAKGFGRPSTTDGTHVGNKNXXXXXXXXXXKDINATPSSRMQEQQHN---------------RWASAKDDSNGGSSERQG-VSGQPGAEATACTSVGNLE----MNILLLLQGCRLG-FGITMSGYQIKLREQVRPNVFTSTGSSGMSRAAXXXXXXXXXXXXXXXXXXXRTALKERREAIEAARRDQECWERRGRASTSSRPRHRTPGRENIKAISGNNGSTGGGVGGXARSSPXXXX--------------------------------RSPIPPESRRTSSAGHPGSGSRAAVTNDGGVXXXXXXXXXXXXXXXXXXXXXGGVSGGVGYFELEQRISRKD-GKGEAARTEEGERLSRSRQGSGSGITLKVYGDVWRWLGDEKVCSLREKVVEARFSLVHVTSVARKAEAIAQTFPNLSCLRMLDNDICSLKQLERLRPLLSGLHTLHLGRKNSLTKNASLVALRAWVKVQGCGARGHLILEIPPSTMRAEEEHCLSRGRDGSHHYPQQQQRQPESNTEGTRSRQSASSLPPDGAANVIQAPXXXXXXXXXXXXXXXXXXXAAARGLGADGNNIH--------VAVEQRRKGGGLSSEASRERALAGAS---------AERGTATAAGALLGSRGPSCSEGHLPVPGAAFPPPRTA------TALPAAAAADAAFERLLSARERAASSSWGAIVLSIGGENSRRGAQTTRDVARDSPG-SGSAWMTSSRGAKLVCNLMV 782
            SL+ELSL GNPVA QNGLGSSY+ Y+L HLP LHHLDLKRVTDH      G S + H                           +                S +A    M  S  G  +P GA +  G   +T GT+    +             + +  ++ + + H+                 +   DD  G    R G V   P  +  A  S G +       + + +Q    G  GIT        R   R  V  + G+ GMSRAA                   +TALKERREAIEAARR  ECWERRG  S +SR RHR P R++  A      ST        +  P  XX                                RSP PP SRRTSS  + GS         GGV                     G +SGGVGYFELEQR+  K  G G+ A +  G        G+G GITLKVYGDVWRWLGD KVCSLRE+VVEARFSLVHVTSVARKA  IAQTFPNLSCL++LDNDI SL+QLE LRP+L+ L  L+LG KN +T++AS  ALRAWVK QG       +  + P    A +   +  G    H   QQQQ+ P +N    +   S  S P   AA  + A                        G+ +  +N H        + V ++ + G     A +++ +              E+ T +A+       GP+    H  V  +   P   A      T     A+ DAAFERL  AR RAASSSWGAI L+        G+ T   V+ D  G +  AW +S+RGAKL CN MV
Sbjct:  291 SLMELSLFGNPVAVQNGLGSSYRSYILQHLPKLHHLDLKRVTDH------GQS-ISHQYSDGNMAPSTTRTASADDARESRGGGNNGR-------------SRTAFHETMGNSGKGSRKPSGAWRTGGNGFSTSGTNSNEGSNDGFPVLL----THGSADTQSRGEHHSGSXXXXXXXXXXXXXXXSQGGDDPRG--LHRAGPVMSAPAPDKGAIGSDGMVRGGAWEQVTVFVQTMGAGECGITAGDSS---RGAARKQVVLAVGT-GMSRAAEAREAVTLKRAKTDREEWEKTALKERREAIEAARRA-ECWERRGGGSITSRARHRNP-RDSTTA---GKDSTSRKTSAHVKPPPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPTPP-SRRTSSLANTGSEVAGVTRTVGGVGGRRSRDTGRR----------GSISGGVGYFELEQRLRHKSMGVGDVAASGGG-----VPSGAG-GITLKVYGDVWRWLGDGKVCSLREQVVEARFSLVHVTSVARKASTIAQTFPNLSCLQLLDNDIRSLRQLEHLRPMLTNLTALYLG-KNPVTRSASEAALRAWVKGQG-----PCVSLVSPGHGPASDGRNVCTGDRRLH--TQQQQQSPLTNAFAGQQHSSPPSTPTTQAAPPLPA-APTPHPPCGTGTNNVKPLGGGDMGVPSRHSNGHENGCEKTTIRVLEQGEAGNTVIAARQDKKMQCNGDNMPGFEDIVEQSTRSASER---QSGPTVRSEHTAVNESNNTPASAALVRIDCTDRDPLASTDAAFERLAEARSRAASSSWGAIALA--------GSSTASHVSDDPDGVNDMAWASSARGAKLACNGMV 1081          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1182.1609.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4V8_ECTSI3.610e-7835.47Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JFV0_9PHAE5.460e-7235.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 262..292
NoneNo IPR availablePANTHERPTHR10552U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Acoord: 2..245
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..47
e-value: 9.5E-6
score: 26.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1182contigH-canaliculatus_F_contig1182:388..5789 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1182.1609.1mRNA_H-canaliculatus_F_contig1182.1609.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1182 388..5789 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1182.1609.1 ID=prot_H-canaliculatus_F_contig1182.1609.1|Name=mRNA_H-canaliculatus_F_contig1182.1609.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=808bp
SLLELSLDGNPVAGQNGLGSSYQRYVLHHLPSLHHLDLKRVTDHDHDQQR
GTSHLKHPRHPRSGSDAPKSTAASPASTSGARGIDRDAGGGGGGGVGGTN
GSVSARSRAMSLSESGRPGAAKGFGRPSTTDGTHVGNKNNNSSSSSSQNK
DINATPSSRMQEQQHNRWASAKDDSNGGSSERQGVSGQPGAEATACTSVG
NLEMNILLLLQGCRLGFGITMSGYQIKLREQVRPNVFTSTGSSGMSRAAE
AREAVAAKRVKTEREERERTALKERREAIEAARRDQECWERRGRASTSSR
PRHRTPGRENIKAISGNNGSTGGGVGGGARSSPSPSPRSPIPPESRRTSS
AGHPGSGSRAAVTNDGGVGVGGGAGGEREGGAGKGRRGRGGVSGGVGYFE
LEQRISRKDGKGEAARTEEGERLSRSRQGSGSGITLKVYGDVWRWLGDEK
VCSLREKVVEARFSLVHVTSVARKAEAIAQTFPNLSCLRMLDNDICSLKQ
LERLRPLLSGLHTLHLGRKNSLTKNASLVALRAWVKVQGCGARGHLILEI
PPSTMRAEEEHCLSRGRDGSHHYPQQQQRQPESNTEGTRSRQSASSLPPD
GAANVIQAPAPPQPPPAPAATKPDGGGTAAARGLGADGNNIHVAVEQRRK
GGGLSSEASRERALAGASAERGTATAAGALLGSRGPSCSEGHLPVPGAAF
PPPRTATALPAAAAADAAFERLLSARERAASSSWGAIVLSIGGENSRRGA
QTTRDVARDSPGSGSAWMTSSRGAKLVCNLMVRRVCETHKRKENFGHAWE
TAVVNIME
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf