mRNA_H-canaliculatus_F_contig11810.1605.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11810.1605.1
Unique NamemRNA_H-canaliculatus_F_contig11810.1605.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig11810.1605.1 vs. uniprot
Match: A0A6H5JY15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY15_9PHAE)

HSP 1 Score: 363 bits (932), Expect = 9.290e-117
Identity = 176/220 (80.00%), Postives = 195/220 (88.64%), Query Frame = 2
Query:  416 LLVQAERRRKQTEECRDMIQTLRIVPNRSWGRASKPQQQRWEILGCNGLVEAAAAAEKSGAGGDGGLRLPDCTARPSAASDPLIAVCAGSTTRGVPFPDEQSLALFRFLLPSLARTADCGFRYVAVIGYDVGDGFFDGAAGKAKTLLWFESEVSRPATLRGLSIELELVRVENHIKKPGPVFTAITKAAYELGANYIYRVNDDSEMHTPWAASFVNALEV 1075
            L+VQA RR KQTEEC+ M ++LRIVPN+SWG+A+KPQQQ+W++LGCNGL+E  A       G  GGL+LPDCTARPSA SDPLIAVCAGSTTRGVP PDE SLALFRFLLPSLARTADCGFRY+AV+GYDVGDGFFDGA GKAKTL WFE+EV+RPA LRGLSIEL+LVRVEN IKKPGPVFTA+TKAAY+ GANYIYRVNDDSEMHTPWA SFVNALE 
Sbjct:  138 LVVQAARREKQTEECKGMAKSLRIVPNKSWGKATKPQQQQWDLLGCNGLIETEARG-----GQGGGLKLPDCTARPSAKSDPLIAVCAGSTTRGVPSPDEHSLALFRFLLPSLARTADCGFRYLAVVGYDVGDGFFDGATGKAKTLAWFETEVARPAALRGLSIELDLVRVENAIKKPGPVFTAVTKAAYDRGANYIYRVNDDSEMHTPWARSFVNALEA 352          
BLAST of mRNA_H-canaliculatus_F_contig11810.1605.1 vs. uniprot
Match: D8LIA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA3_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 3.610e-74
Identity = 123/145 (84.83%), Postives = 130/145 (89.66%), Query Frame = 2
Query:  641 PSAASDPLIAVCAGSTTRGVPFPDEQSLALFRFLLPSLARTADCGFRYVAVIGYDVGDGFFDGAAGKAKTLLWFESEVSRPATLRGLSIELELVRVENHIKKPGPVFTAITKAAYELGANYIYRVNDDSEMHTPWAASFVNALEV 1075
            PSA SDPLIAVCAGSTTRGVPFPDE SLALFRFLLPSLARTADCGFRY+AV+GYDVGDGFFDGAAGKAK        V+RPA LRGLSIELELVRVEN I+KPGPVFTA+TKAAY+ GANYIYRVNDDSEMHTPWA SFVNA+E 
Sbjct:   31 PSATSDPLIAVCAGSTTRGVPFPDEHSLALFRFLLPSLARTADCGFRYLAVVGYDVGDGFFDGAAGKAK--------VARPAALRGLSIELELVRVENAIQKPGPVFTAVTKAAYDRGANYIYRVNDDSEMHTPWARSFVNAIEA 167          
BLAST of mRNA_H-canaliculatus_F_contig11810.1605.1 vs. uniprot
Match: A0A7S2MGS7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MGS7_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.900e-49
Identity = 95/206 (46.12%), Postives = 124/206 (60.19%), Query Frame = 2
Query:  449 TEECRDMIQTLRIVPNRSWGRASKPQQQRWEILGCNGLVEAAAAAEKSGAGGDGGLRLPDCTARPSAAS-DPLIAVCAGSTTRGVPFPDEQSLALFRFLLPSLARTADCGFRYVAVIGYDVGDGFFDGAAGKAKTLLWFESEVSRPATLRGLSIELELVRVENHIKKPGPVFTAITKAAYELGANYIYRVNDDSEMHTPWAASFVN 1063
            T  C++ +    + P  SWGR +  +Q  W    C+ LV   A   +S A       LPDC+A     S   ++AVC G+TTR V  P    LALFR+LLPS+A T DCG RY+ V+GYD GD F+D   G  +   WFE  +  P   RG++I L LV+V N +KKPGPVF  ITK AY+ GA+YIYRVNDD+EM +PWA  F++
Sbjct:   47 TAWCKEAMWKNDVRPGASWGRLTVKEQAEWGRKQCDQLVTEKAMFVRSEA-------LPDCSAGSGDVSRQEVVAVCCGTTTRKVTGPQISKLALFRYLLPSIAHTVDCGLRYMVVVGYDKGDPFYDTYHGLTQVENWFEQHMQVPLAQRGVNISLRLVKVVNTLKKPGPVFNTITKYAYDEGADYIYRVNDDTEMASPWAKKFIS 245          
BLAST of mRNA_H-canaliculatus_F_contig11810.1605.1 vs. uniprot
Match: A0A7S2WUR4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUR4_9STRA)

HSP 1 Score: 181 bits (460), Expect = 4.120e-47
Identity = 96/209 (45.93%), Postives = 127/209 (60.77%), Query Frame = 2
Query:  458 CRDMIQTLRIVPNRSWGRASKPQQQRWEILGCNGLVEAA-----AAAEKSGAGGDGGLRLPDCTARPSAASDPLIAVCAGSTTRGVPFPDEQSLALFRFLLPSLARTADCGFRYVAVIGYDVGDGFFDGAAGKAKTLLWFESEVSRPATLRGLSIELELVRVENHIKKPGPVFTAITKAAYELGANYIYRVNDDSEMHTPWAASFVNAL 1069
            C+      ++V  +SWG  SK  ++RW    C+  V ++      A  K+G      ++  +          PLIAV  GSTTR V  P   +LALF +LLPSLARTADCGFRY+ VIG+D GD F+D  +GK +   WFE  +      R L + L+LVR+ NH+KKPGPVFT IT+AAY  GA+YIYRVNDD+E+  PWA+ FV+ L
Sbjct:  167 CQAAATRHQVVVGQSWGSLSKDDRRRWTKRDCDMFVRSSNGGGGRAPRKAGPAPGSAVKPREDVCPNDGDKKPLIAVACGSTTRKVMSPSTSNLALFTYLLPSLARTADCGFRYMVVIGFDKGDPFWDTLSGKLQAENWFEQNLVHVFNKRHLQVSLKLVRLVNHLKKPGPVFTEITRAAYNEGADYIYRVNDDTELLNPWASLFVSTL 375          
BLAST of mRNA_H-canaliculatus_F_contig11810.1605.1 vs. uniprot
Match: A0A7S2B2S3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B2S3_9STRA)

HSP 1 Score: 168 bits (425), Expect = 4.050e-44
Identity = 79/137 (57.66%), Postives = 99/137 (72.26%), Query Frame = 2
Query:  659 PLIAVCAGSTTRGVPFPDEQSLALFRFLLPSLARTADCGFRYVAVIGYDVGDGFFDGAAGKAKTLLWFESEVSRPATLRGLSIELELVRVENHIKKPGPVFTAITKAAYELGANYIYRVNDDSEMHTPWAASFVNAL 1069
            PL+AVC G+TTR V  P    LALFR+LLPS+A T DCGF YVAV+GYD GD F+D   GK +   WF  ++  P + RGL++ L+LV+ +N +KKPGPVF  ITK AY++GA+YIYRVNDD+EM  PWA  FV  L
Sbjct:   35 PLVAVCCGTTTRKVDQPAISKLALFRYLLPSMAHTLDCGFEYVAVVGYDKGDQFYDTLHGKLQVEQWFLDKIQGPLSERGLTVRLDLVQCDNKLKKPGPVFNIITKHAYDVGADYIYRVNDDTEMAAPWAHRFVTKL 171          
BLAST of mRNA_H-canaliculatus_F_contig11810.1605.1 vs. uniprot
Match: F0YNX4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNX4_AURAN)

HSP 1 Score: 168 bits (425), Expect = 5.660e-42
Identity = 101/222 (45.50%), Postives = 121/222 (54.50%), Query Frame = 2
Query:  452 EECRDMIQTLRIVPNRSWGRASKPQQQRWEILGCNGLVE---------AAAAAEKSGAGGDGGLRLPDCTARPSAASDPLIAVCAGSTTRG-----VPFPDE-QSLALFRFLLPSLARTADCGFRYVAVIGYDVGDGFFDGAAGKAKTLLWFESEVSRPATLRGLSIELELVRVENHIKKPGPVFTAITKAAY-ELGANYIYRVNDDSEMHTPWAASFVNAL 1069
            +ECR M+    + P  SWG      Q+RW  L C+GLV+         AA  A KS       + L  C    S    PL+AVC G+TTRG      P PD  + LA+F  LLPS  RT DCGFRY  V+GYDVGD F+D   G      WF+  V        +  EL    V+N IKKPGPVFTAIT+ AY E  A+YIYRVNDD+E+ T WA  FV AL
Sbjct:  192 DECRAMMAKHSVAPGSSWGSLGPNGQRRWGSLRCDGLVKGAKNTPSKAAADRARKSTLPSSRQVTLETCPK--STEPLPLVAVCCGTTTRGKGGWITPRPDALEELAVFDHLLPSFVRTVDCGFRYAVVLGYDVGDKFWDLGDGATLARAWFDENVKSVLAAANVEAELRFAVVDNKIKKPGPVFTAITRHAYYEAKADYIYRVNDDTELATRWAKHFVAAL 411          
BLAST of mRNA_H-canaliculatus_F_contig11810.1605.1 vs. uniprot
Match: F0YNU3_AURAN (Nudix hydrolase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNU3_AURAN)

HSP 1 Score: 170 bits (431), Expect = 7.900e-42
Identity = 97/215 (45.12%), Postives = 126/215 (58.60%), Query Frame = 2
Query:  452 EECRDMIQTLRIVPNRSWGRASKPQQ--QRWEILGCNGLVEAAAAAEKSGAGGDGGLRLPDCTARPSAASDPLIAVCAGSTTRG-----VPFPDE-QSLALFRFLLPSLARTADCGFRYVAVIGYDVGDGFFDGAAGKAKTLLWFESEVSRPATLRGLSIELELVRVENHIKKPGPVFTAITKAAYELG-ANYIYRVNDDSEMHTPWAASFVNAL 1069
            EEC  +  T  + P  +WG   +     +RW+ LGC G+VE AA A             P      SA   PLIAVC+G+TTR       P P   + LA F++LLPS  RTA+CGFRY+ V+ YDVGD F+D   G A+   WFE+ ++ P     + +EL  V+V+N +KKPGPVF A+T+AAY    A+YIYRVNDD+E  T WA  FVNAL
Sbjct:  378 EECFALQATHGVKPAMTWGTLDRNPSSFRRWKELGCGGVVERAANAAXXXXXXXXREVCPK-----SADPKPLIAVCSGTTTRQKGGWITPRPGHLEDLAAFQYLLPSFKRTAECGFRYLVVLAYDVGDQFWDRGDGVARARAWFEASIATPLAAANMDVELRFVKVDNAVKKPGPVFAAMTRAAYAAWKADYIYRVNDDTEFKTKWARPFVNAL 587          
BLAST of mRNA_H-canaliculatus_F_contig11810.1605.1 vs. uniprot
Match: A0A8J2WXY5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WXY5_9STRA)

HSP 1 Score: 164 bits (416), Expect = 8.420e-41
Identity = 89/212 (41.98%), Postives = 122/212 (57.55%), Query Frame = 2
Query:  452 EECRDMIQTLRIVPNRSWGRASKPQQQRWEILGCNGLVEAAAAAEKSGAGGDGGLRLPDC-TARPSAASDPLIAVCAGSTTRG----VPFPDEQSLALFRFLLPSLARTADCGFRYVAVIGYDVGDGFFDGAAGKAKTLLWFESEVSRPATLRGLSIELELVRVENHIKKPGPVFTAITKAA-YELGANYIYRVNDDSEMHTPWAASFVNAL 1069
            +EC  M+Q   ++P  +WG      Q+RW  L C+GLV       +  A     + +P+  T  PS  + PLIA+C G+TTRG    +       LA+F  LLPS  RT +CGFRYV V+GYD+GD ++D   G  +   WF+  +      + + +EL    V+N +KKPGPVFT IT+ A YE  A+YIYRVNDD+E+ T WA  FV AL
Sbjct:  168 DECAFMMQKHSVIPGANWGSLGPNGQRRWTKLRCDGLV----GGSRVRAPPPRHINVPELETCPPSTQNQPLIALCCGTTTRGKQGWITPQRLDDLAVFHHLLPSFHRTVECGFRYVVVLGYDIGDRWWDLGGGAEQGRRWFQENIKSQLAAKNVQVELRYAVVDNKVKKPGPVFTGITREAFYEAKADYIYRVNDDTELATRWAKHFVEAL 375          
BLAST of mRNA_H-canaliculatus_F_contig11810.1605.1 vs. uniprot
Match: A0A812R5F6_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812R5F6_SYMMI)

HSP 1 Score: 155 bits (391), Expect = 3.420e-39
Identity = 75/137 (54.74%), Postives = 93/137 (67.88%), Query Frame = 2
Query:  659 PLIAVCAGSTTRGVPFPDEQSLALFRFLLPSLARTADCGFRYVAVIGYDVGDGFFDGAAGKAKTLLWFESEVSRPATLRGLSIELELVRVENHIKKPGPVFTAITKAAYELGANYIYRVNDDSEMHTPWAASFVNAL 1069
            PLIA+ A +TTR V  P  Q +ALF  LLPSL R+ DCG+RYV V+GYDVGD F+D  AG  +   WF  +++ P    G+SI L+ V+V N +KKPGPVF A+ K AYELGANY YRVNDD+E    W   +V AL
Sbjct:   39 PLIAIMAATTTRRVKQPHVQKIALFTLLLPSLIRSLDCGYRYVYVMGYDVGDPFYDSEAGMQEVQAWFARQIAEPMRRNGISITLKPVKVFNPLKKPGPVFVAMAKPAYELGANYFYRVNDDTEFRGRWPKLYVKAL 175          
BLAST of mRNA_H-canaliculatus_F_contig11810.1605.1 vs. uniprot
Match: A0A482STA7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482STA7_9ARCH)

HSP 1 Score: 152 bits (383), Expect = 8.040e-38
Identity = 79/197 (40.10%), Postives = 110/197 (55.84%), Query Frame = 2
Query:  485 IVPNRSWGRASKPQQQRWEILGCNGLVEAAAAAEKSGAGGDGGLRLPDCTARPSAASD-PLIAVCAGSTTRGVPFPDEQSLALFRFLLPSLARTADCGFRYVAVIGYDVGDGFFDGAAGKAKTLLWFESEVSRPATLRGLSIELELVRVENHIKKPGPVFTAITKAAYELGANYIYRVNDDSEMHTPWAASFVNALE 1072
            + P +SWG  S    + W+   C+ +      A K          + +CTA      D P+IAV A STTR +  P   ++ALF +LLPSL RT DCGFR+   +GYD GD ++D A+G  +   W +  V +P   R +S E   +RV N +KKPGPVF  + +AAY+ GA Y YR+NDD+E+   W  +FV  LE
Sbjct:    5 VQPMKSWGSMSPGVIEEWKKNRCDIVFTIQRMARKP---------VSNCTAYSGLGKDLPMIAVMAASTTRNIKEPSPTTMALFTYLLPSLMRTLDCGFRFEYYLGYDQGDVYYDDASGMQEATSWIDKNVKQPLANRKISFEFRPIRVHNTVKKPGPVFLEMARAAYKNGAAYFYRINDDTELLGTWPKAFVRTLE 192          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11810.1605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JY15_9PHAE9.290e-11780.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIA3_ECTSI3.610e-7484.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2MGS7_9STRA1.900e-4946.12Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2WUR4_9STRA4.120e-4745.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2B2S3_9STRA4.050e-4457.66Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0YNX4_AURAN5.660e-4245.50Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
F0YNU3_AURAN7.900e-4245.12Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A8J2WXY5_9STRA8.420e-4141.98Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A812R5F6_SYMMI3.420e-3954.74Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A482STA7_9ARCH8.040e-3840.10Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11810contigH-canaliculatus_F_contig11810:590..3923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score249.2
Seed ortholog evalue1.7e-63
Seed eggNOG ortholog2880.D8LIA3
EggNOG OGs2B66X@1,2S0KP@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size1664
Cds size624
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11810.1605.1prot_H-canaliculatus_F_contig11810.1605.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11810 1056..3349 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928882.4113536-UTR-H-canaliculatus_F_contig11810:589..10551622928882.4113536-UTR-H-canaliculatus_F_contig11810:589..1055Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11810 590..1055 +
1696845599.815541-UTR-H-canaliculatus_F_contig11810:589..10551696845599.815541-UTR-H-canaliculatus_F_contig11810:589..1055Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11810 590..1055 +
1622928882.5064688-UTR-H-canaliculatus_F_contig11810:3349..39231622928882.5064688-UTR-H-canaliculatus_F_contig11810:3349..3923Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11810 3350..3923 +
1696845599.8855398-UTR-H-canaliculatus_F_contig11810:3349..39231696845599.8855398-UTR-H-canaliculatus_F_contig11810:3349..3923Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11810 3350..3923 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928882.4362833-CDS-H-canaliculatus_F_contig11810:1055..12281622928882.4362833-CDS-H-canaliculatus_F_contig11810:1055..1228Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11810 1056..1228 +
1696845599.8337283-CDS-H-canaliculatus_F_contig11810:1055..12281696845599.8337283-CDS-H-canaliculatus_F_contig11810:1055..1228Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11810 1056..1228 +
1622928882.4543617-CDS-H-canaliculatus_F_contig11810:1944..21521622928882.4543617-CDS-H-canaliculatus_F_contig11810:1944..2152Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11810 1945..2152 +
1696845599.8488748-CDS-H-canaliculatus_F_contig11810:1944..21521696845599.8488748-CDS-H-canaliculatus_F_contig11810:1944..2152Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11810 1945..2152 +
1622928882.4745615-CDS-H-canaliculatus_F_contig11810:2356..24851622928882.4745615-CDS-H-canaliculatus_F_contig11810:2356..2485Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11810 2357..2485 +
1696845599.8587527-CDS-H-canaliculatus_F_contig11810:2356..24851696845599.8587527-CDS-H-canaliculatus_F_contig11810:2356..2485Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11810 2357..2485 +
1622928882.491304-CDS-H-canaliculatus_F_contig11810:3235..33491622928882.491304-CDS-H-canaliculatus_F_contig11810:3235..3349Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11810 3236..3349 +
1696845599.8674054-CDS-H-canaliculatus_F_contig11810:3235..33491696845599.8674054-CDS-H-canaliculatus_F_contig11810:3235..3349Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11810 3236..3349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11810.1605.1

>prot_H-canaliculatus_F_contig11810.1605.1 ID=prot_H-canaliculatus_F_contig11810.1605.1|Name=mRNA_H-canaliculatus_F_contig11810.1605.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=208bp
MIQTLRIVPNRSWGRASKPQQQRWEILGCNGLVEAAAAAEKSGAGGDGGL
RLPDCTARPSAASDPLIAVCAGSTTRGVPFPDEQSLALFRFLLPSLARTA
DCGFRYVAVIGYDVGDGFFDGAAGKAKTLLWFESEVSRPATLRGLSIELE
LVRVENHIKKPGPVFTAITKAAYELGANYIYRVNDDSEMHTPWAASFVNA
LEVTRSR*
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mRNA from alignment at H-canaliculatus_F_contig11810:590..3923+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11810.1605.1 ID=mRNA_H-canaliculatus_F_contig11810.1605.1|Name=mRNA_H-canaliculatus_F_contig11810.1605.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3334bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11810:590..3923+ (Hapterophycus canaliculatus Oshoro5f female)
AGGCGCGCCGTCTCAGTACAATGGCGGGGGGAGCGGAAGAGGCTCGAGGC GGGACGGCGCCGCCGGGGCGAGGAGGGCGGACGGAGAGGAATCGAGGCCA ACCTCTTCCTCCTCGGCACAATCGGGAAGACGAATAGGAGGAGGAGGAGG AGGAGAAACGGACGGAATATTAAGAGCTGACCACGCCACCTCGGCAAGTG ACGGCTCCCCAGCATTAGCGGTAGCAGGATCAGCAATCGCAGGAGCGGCG GCAGGGAGCGGTTTCGCGAGCGACGGGGGAGAGGGCGACGGGAAGGGTGG TCAGGCGGTACACGGGGTTGAGGCCGGCCGAGGGGGTGCGGCCGGGGAGC CCGCGCGGGCGGAGGGCGGGGAAGGGGAGGGGGAGGGGCGGGGAGCAGGA CCGGAAGTAGACGTCTTGCTGGTGCAGGCGGAGCGACGGCGGAAACAGAC AGAGGAATGCCGGGACATGATTCAGACGCTGCGAATCGTGCCCAACCGTA GCTGGGGGAGGGCCTCGAAACCCCAGCAGCAGCGGTGGGAGATACTGGGG TGCAACGGCCTGGTGGAGGCGGCGGCGGCGGCCGAGAAGAGCGGCGCCGG TGGTGATGGGGGGTTGCGACTGCCGGACTGCACTGCACGGTGAGGGGGGT GAAGGCATCCTTCGGGGGCGACGGCGGAGGGCGCACGCGTGACCATACAT GCACAGACTTGGGGGGAGAGGGAGGGACGGATGATAATCGACCAACGAAA CCGCGAAGTGTTCGCCTTTCCCCCGCCCCCGGTCCGAATTTCCGAGCTCT CTGCCGTCCTTTCGGTGGGAAATTCCAGCCGCGCCCTCGTTGCGGGAACG TGGAGGCTATCCCTTACCTCCCTCGTCTCTCTGACCTTCGCTCCCTACTT TTACGTCCCAGCCTGATGTTGTAGCTGCCATCCCCGGCTCAGTCCGTCGC ACAGGAAAGTGGTTTGAGGTTTTTTGCGAAATTTTAACGTCAGAGCGAGG CCAAGTCTTGACCTCCTATGCGGAGACGGGGCAGACCGCGTTGCGGCTTT GAACCTCGAAGCTTGGTAGATGGGCAAAAAATGGGTAACAAGTAACCAAC GAGGGACGAGGGTTGCCCTGCCCTGTGACCACGGGATAGGTCTTTGGCGA GGAGGTTTTGTAACAAGTAGCACCATCACCATCACCAGTCACGACAGCAG AAGCGCCAACAACAGCAAGAAAAGAGAAGCAAAACGATAACCACAACGAA AACAAAAAACAAGAAGAAGCGAAAGAAGACCGAAAGCCCAGCGAGCCATC TTCGTACCCCGTCCGCCCCCAACGCCGCCCCGACCACGACCAATAAAACG ACCAGCCCGTCGGCGGCGAGCGACCCGCTCATCGCCGTGTGTGCGGGCAG CACGACGAGAGGGGTGCCCTTCCCGGACGAGCAGTCCCTCGCGCTCTTCC GCTTCCTGCTGCCCTCGCTCGCTCGGACGGCGGACTGCGGGTTCCGCTAC GTCGCGGTGATCGGGTACGACGTAGGGGACGGGTTTTTCGACGGTGCCGC CGGGAAGGCGAAGGTGCGTGTCCCGTCTAGCTGGCTGTAGCGTCTTCGAA GCCGCCAGCGTGTCTTGTCTCTCTGGCCGTTTGCCGTTCCGTCCTCCTCT CTCGTCCGCCTGTGCGTGTCTCTTTTCTCCCTCTCTCTTTTCTCCCCCTC CTCCTCTCCGACACACACCCATCTGCCGCTTCCTTCCCCCGCCCCGCCCC CTCGCGTGTCCCAAAAGACGCTGTTGTGGTTCGAGTCGGAGGTGTCCCGG CCAGCGACGTTGCGCGGCTTGAGCATAGAGCTGGAGCTCGTCCGGGTCGA GAACCACATAAAGAAGCCCGGCCCTGTCTTCACGGCGATCACGAAGGTGT GTGTTTGCGCTTTTCTCGCCGTTGCGCCCGCCGCGCGCTTGTTGCGGAAA ACCGGCGCCGCTTTCAGATGAGCCGTCCCGGCCTTGCTTTCCGCCTCCGA GGCACAGCTACAGCAGGACATCTTTCTGTGGCAGCGCGTGTGCCCTCGTG ACCCGATGCCTGCAGTCGGTGGCCGCCTCGCCGATCTGGGGAGCGTCTTC TACAGCGTATGCATGCCGAACCATGTGTCTTCCACCTCTTGTTTTTTTGG TCGCCTGCCAGACGAGGGATCTCACGTCGAGAGAGCGAGCGGCCTCGAGA ACCGACTCGTCCCTCGCGGCTCACCTCAATTTTTTATTTTGTCAAGTACA TTGGTGTACCAACTAGTTTCCATTGGTCTTCCTCTTCCGAGGCCTGTCCT CCCTTCTCTAGATCTGTCGATTTTTACGCAGACGTGTTTCAACTAGTCGC CATGGCCGCGTGTGCATGAATTCAGGCGGCGTGGCCAACAGCTGCGGGAG GCGGCGGCGAGCTTGAGTGTAAAATCTCCTGAGCAAGGACATCTCCGCGT GGGCCGATTGCACAAGTTTCCGAGCTCTGAAATCCCCAATTCCTACACCC TTTCGCCCAATCCAAAACTGCGGCCGTCGAATCCGCCCATTTATGCCCGC ATGCGCACGTACGTCTCCTTCGGCGCGGTCCCGCCGTGTGATTTCGTCGT GTCCTCTCGCGTATTTTTTTCTGTCTCTGTTCCTCTTTTTCTGCAGGCGG CGTACGAGCTAGGGGCGAACTACATCTACCGCGTGAACGACGACTCCGAG ATGCACACGCCGTGGGCCGCGTCCTTCGTCAACGCCCTCGAGGTGACCCG GTCGCGGTAGTCAGCGAAGGAGGCTTCGTGGGAGCGCTCGCTGGCGAGCG ACCGCGGCCGAACTCCCGTGCGCGAAGGAGGCGTGTGGCCGATGCCTCAG GCGACGGCAAGATCCTCGACCAAGCGTCGGTTGATCTGTAGTCTCCACGG TGGCTAGCACGCTCGCCCCCCCCGCCAGTGCTTTCACATTCCGACCGGGC AACAGGATTTTCCGTGACACCACCTGCTCTCGCCTGAAACTGAGTCCTGG TTTGCCAGGGGTGTGGGTGTTGGTGAACAGCGGTGTAGCCTTGGCTGGAA GCGCTTTTTTTCTTCTCAGAAAAAAGACGTGTTTTGGACCGGAACGATCC CTCCGTTGCCTGTTCCGGCTGCCCTGCCCACGCGGCTACAGCCTCGCTCC ATGTTAACGAGGAAGCCGCGGCACAGTCCGTGGTGAAGCGCTCAGTCTGA GAACCGCAACGGCATGAAGAAAAGAGAGTCGTGTATCCCAGGAGCCGTGC TCCACCTCGAAGGGATGCGAGTTGCAGATTCAGACGACTACAAGTACAAG TACGGCAGTTACGATATTCCCACGCACCTGAACC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11810:590..3923+

>mRNA_H-canaliculatus_F_contig11810.1605.1 ID=mRNA_H-canaliculatus_F_contig11810.1605.1|Name=mRNA_H-canaliculatus_F_contig11810.1605.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1248bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11810:590..3923+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATTCAGACGCTGCGAATCGTGCCCAACCGTAGCTGGGGGAGGGCCTC
GAAACCCCAGCAGCAGCGGTGGGAGATACTGGGGTGCAACGGCCTGGTGG
AGGCGGCGGCGGCGGCCGAGAAGAGCGGCGCCGGTGGTGATGGGGGGTTG
CGACTGCCGGACTGCACTGCACGATGATTCAGACGCTGCGAATCGTGCCC
AACCGTAGCTGGGGGAGGGCCTCGAAACCCCAGCAGCAGCGGTGGGAGAT
ACTGGGGTGCAACGGCCTGGTGGAGGCGGCGGCGGCGGCCGAGAAGAGCG
GCGCCGGTGGTGATGGGGGGTTGCGACTGCCGGACTGCACTGCACGCCCG
TCGGCGGCGAGCGACCCGCTCATCGCCGTGTGTGCGGGCAGCACGACGAG
AGGGGTGCCCTTCCCGGACGAGCAGTCCCTCGCGCTCTTCCGCTTCCTGC
TGCCCTCGCTCGCTCGGACGGCGGACTGCGGGTTCCGCTACGTCGCGGTG
ATCGGGTACGACGTAGGGGACGGGTTTTTCGACGGTGCCGCCGGGAAGGC
GAAGCCCGTCGGCGGCGAGCGACCCGCTCATCGCCGTGTGTGCGGGCAGC
ACGACGAGAGGGGTGCCCTTCCCGGACGAGCAGTCCCTCGCGCTCTTCCG
CTTCCTGCTGCCCTCGCTCGCTCGGACGGCGGACTGCGGGTTCCGCTACG
TCGCGGTGATCGGGTACGACGTAGGGGACGGGTTTTTCGACGGTGCCGCC
GGGAAGGCGAAGACGCTGTTGTGGTTCGAGTCGGAGGTGTCCCGGCCAGC
GACGTTGCGCGGCTTGAGCATAGAGCTGGAGCTCGTCCGGGTCGAGAACC
ACATAAAGAAGCCCGGCCCTGTCTTCACGGCGATCACGAAGACGCTGTTG
TGGTTCGAGTCGGAGGTGTCCCGGCCAGCGACGTTGCGCGGCTTGAGCAT
AGAGCTGGAGCTCGTCCGGGTCGAGAACCACATAAAGAAGCCCGGCCCTG
TCTTCACGGCGATCACGAAGGCGGCGTACGAGCTAGGGGCGAACTACATC
TACCGCGTGAACGACGACTCCGAGATGCACACGCCGTGGGCCGCGTCCTT
CGTCAACGCCCTCGAGGTGACCCGGTCGCGGTAGGCGGCGTACGAGCTAG
GGGCGAACTACATCTACCGCGTGAACGACGACTCCGAGATGCACACGCCG
TGGGCCGCGTCCTTCGTCAACGCCCTCGAGGTGACCCGGTCGCGGTAG
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